sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-02.freexian.com
+==============================================================================+
| python-cutadapt 4.7-2+bd1 (arm64) Thu, 24 Oct 2024 08:48:13 +0000 |
+==============================================================================+
Package: python-cutadapt
Version: 4.7-2+bd1
Source Version: 4.7-2
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
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The following packages will be upgraded:
apt base-passwd coreutils libapt-pkg6.0t64 libhtml-form-perl libkeyutils1
liblz1 libnet-ssleay-perl sysvinit-utils
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Local sources
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Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libpython3-all-dev, python3-all-dev:any, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm, python3-pytest, python3-pytest-mock, python3-pytest-timeout, python3-xopen, python3-dnaio (>= 1.2.0), cython3, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libpython3-all-dev, python3-all-dev:any, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm, python3-pytest, python3-pytest-mock, python3-pytest-timeout, python3-xopen, python3-dnaio (>= 1.2.0), cython3, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Install main build dependencies (apt-based resolver)
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Installing build dependencies
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The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libc-dev-bin
libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64 libexpat1
libexpat1-dev libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev
libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore
liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
libpython3.13-minimal libpython3.13-stdlib libstdc++-14-dev libtirpc-common
libtirpc3t64 libtool libtsan2 libubsan1 linux-libc-dev m4 media-types pigz
po-debconf pybuild-plugin-pyproject python3 python3-all python3-all-dev
python3-autocommand python3-build python3-dev python3-dnaio python3-inflect
python3-iniconfig python3-installer python3-jaraco.context
python3-jaraco.functools python3-minimal python3-more-itertools
python3-packaging python3-pkg-resources python3-pluggy
python3-pyproject-hooks python3-pytest python3-pytest-mock
python3-pytest-timeout python3-setuptools python3-setuptools-scm
python3-toml python3-typeguard python3-typing-extensions python3-wheel
python3-xopen python3-zipp python3.12 python3.12-dev python3.12-minimal
python3.13 python3.13-dev python3.13-minimal rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc cython-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex
bison gdb gcc-doc gdb-aarch64-linux-gnu libc-devtools glibc-doc
libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
libmail-box-perl python3-doc python3-tk python3-venv python3-pip
python-build-doc python-installer-doc python-pytest-mock-doc
python-setuptools-doc python3.12-venv python3.12-doc binfmt-support
python3.13-venv python3.13-doc
Recommended packages:
manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
libltdl-dev libmail-sendmail-perl python3-pygments
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libc-dev-bin
libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64 libexpat1
libexpat1-dev libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev
libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore
liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2 libpython3-all-dev
libpython3-dev libpython3-stdlib libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
libpython3.13-minimal libpython3.13-stdlib libstdc++-14-dev libtirpc-common
libtirpc3t64 libtool libtsan2 libubsan1 linux-libc-dev m4 media-types pigz
po-debconf pybuild-plugin-pyproject python3 python3-all python3-all-dev
python3-autocommand python3-build python3-dev python3-dnaio python3-inflect
python3-iniconfig python3-installer python3-jaraco.context
python3-jaraco.functools python3-minimal python3-more-itertools
python3-packaging python3-pkg-resources python3-pluggy
python3-pyproject-hooks python3-pytest python3-pytest-mock
python3-pytest-timeout python3-setuptools python3-setuptools-scm
python3-toml python3-typeguard python3-typing-extensions python3-wheel
python3-xopen python3-zipp python3.12 python3.12-dev python3.12-minimal
python3.13 python3.13-dev python3.13-minimal rpcsvc-proto
sbuild-build-depends-main-dummy zlib1g-dev
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Get:37 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7 [9164 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-7 [1280 B]
Get:39 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:40 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:41 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-7 [42.2 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-7 [24.2 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-7 [2578 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-7 [1162 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-7 [2386 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-7 [1040 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-7 [1442 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-7 [2365 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB]
Get:50 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:52 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:53 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB]
Get:55 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB]
Get:56 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:57 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:58 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:59 http://deb.debian.org/debian sid/main arm64 cython3 arm64 3.0.11+dfsg-1 [2192 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:63 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:65 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:75 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 74.1.2-2 [736 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 python3-packaging all 24.1-1 [45.8 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 python3-pyproject-hooks all 1.1.0-2 [11.3 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 python3-toml all 0.10.2-1 [16.2 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 python3-wheel all 0.44.0-2 [53.4 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 python3-build all 1.2.2-1 [36.0 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 pybuild-plugin-pyproject all 6.20240824 [11.2 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 python3-xopen all 1.7.0-2 [16.9 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get:105 http://deb.debian.org/debian sid/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 python3-pytest all 8.3.3-1 [249 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 python3-pytest-mock all 3.14.0-1 [18.2 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 python3-pytest-timeout all 2.3.1-1 [21.9 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 python3-setuptools-scm all 8.1.0-1 [40.5 kB]
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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.4-1
Package versions: appstream_1.0.3-1 apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-aarch64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-7 g++-14-aarch64-linux-gnu_14.2.0-7 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-7 gcc-14-aarch64-linux-gnu_14.2.0-7 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: python-cutadapt
Binary: python3-cutadapt, cutadapt
Architecture: any all
Version: 4.7-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Olivier Sallou <osallou@debian.org>, Andreas Tille <tille@debian.org>, Kevin Murray <kdmfoss@gmail.com>, Steffen Moeller <moeller@debian.org>,
Homepage: https://cutadapt.readthedocs.io/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/python-cutadapt
Vcs-Git: https://salsa.debian.org/med-team/python-cutadapt.git
Testsuite: autopkgtest-pkg-pybuild
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libpython3-all-dev, python3-all-dev:any, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm:native, python3-pytest <!nocheck>, python3-pytest-mock <!nocheck>, python3-pytest-timeout <!nocheck>, python3-xopen <!nocheck>, python3-dnaio (>= 1.2.0) <!nocheck>, cython3:native
Package-List:
cutadapt deb science optional arch=all
python3-cutadapt deb python optional arch=any
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Files:
94eeeb9c6c4703113e92ef4ffa6f0036 243405 python-cutadapt_4.7.orig.tar.gz
319e2e4e605f89de482c2ed8707f1304 8856 python-cutadapt_4.7-2.debian.tar.xz
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gpgv: Signature made Wed Mar 27 09:02:10 2024 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-cutadapt_4.7-2.dsc: no acceptable signature found
dpkg-source: info: extracting python-cutadapt in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-cutadapt_4.7.orig.tar.gz
dpkg-source: info: unpacking python-cutadapt_4.7-2.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 4.7-2+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package python-cutadapt
dpkg-buildpackage: info: source version 4.7-2+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_cutadapt
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-aarch64-cpython-313
creating build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/_version.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/json.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/parser.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/utils.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/__main__.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/tokenizer.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/modifiers.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/steps.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/predicates.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/files.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/_match_tables.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/runners.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/align.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/kmer_heuristic.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/log.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/pipeline.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/__init__.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/adapters.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/report.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/statistics.py -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/cli.py -> build/lib.linux-aarch64-cpython-313/cutadapt
running egg_info
creating src/cutadapt.egg-info
writing src/cutadapt.egg-info/PKG-INFO
writing dependency_links to src/cutadapt.egg-info/dependency_links.txt
writing entry points to src/cutadapt.egg-info/entry_points.txt
writing requirements to src/cutadapt.egg-info/requires.txt
writing top-level names to src/cutadapt.egg-info/top_level.txt
writing manifest file 'src/cutadapt.egg-info/SOURCES.txt'
reading manifest file 'src/cutadapt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'CITATION'
warning: no files found matching 'src/cutadapt/*.c'
adding license file 'LICENSE'
writing manifest file 'src/cutadapt.egg-info/SOURCES.txt'
copying src/cutadapt/_align.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/_kmer_finder.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/info.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt
copying src/cutadapt/qualtrim.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt
running build_ext
Compiling src/cutadapt/_align.pyx because it changed.
[1/1] Cythonizing src/cutadapt/_align.pyx
building 'cutadapt._align' extension
creating build/temp.linux-aarch64-cpython-313
creating build/temp.linux-aarch64-cpython-313/src
creating build/temp.linux-aarch64-cpython-313/src/cutadapt
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_align.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/_align.o
In function ‘__pyx_pf_8cutadapt_6_align_7Aligner_12locate’,
inlined from ‘__pyx_pw_8cutadapt_6_align_7Aligner_13locate’ at src/cutadapt/_align.c:6596:13:
src/cutadapt/_align.c:7567:36: warning: ‘__pyx_v_origin’ may be used uninitialized [-Wmaybe-uninitialized]
7567 | __pyx_t_13 = (__pyx_v_origin <= (__pyx_v_best.origin + __Pyx_div_long(__pyx_v_m, 2)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/cutadapt/_align.c: In function ‘__pyx_pw_8cutadapt_6_align_7Aligner_13locate’:
src/cutadapt/_align.c:6633:7: note: ‘__pyx_v_origin’ was declared here
6633 | int __pyx_v_origin;
| ^~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/_align.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/_align.cpython-313-aarch64-linux-gnu.so
Compiling src/cutadapt/qualtrim.pyx because it changed.
[1/1] Cythonizing src/cutadapt/qualtrim.pyx
building 'cutadapt.qualtrim' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/qualtrim.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/qualtrim.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/qualtrim.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/src/cutadapt/info.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling src/cutadapt/info.pyx because it changed.
[1/1] Cythonizing src/cutadapt/info.pyx
building 'cutadapt.info' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/info.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/info.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/info.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/info.cpython-313-aarch64-linux-gnu.so
Compiling src/cutadapt/_kmer_finder.pyx because it changed.
[1/1] Cythonizing src/cutadapt/_kmer_finder.pyx
building 'cutadapt._kmer_finder' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_kmer_finder.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/_kmer_finder.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/_kmer_finder.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so
installing to build/bdist.linux-aarch64/wheel
running install
running install_lib
creating build/bdist.linux-aarch64
creating build/bdist.linux-aarch64/wheel
creating build/bdist.linux-aarch64/wheel/cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/_version.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/json.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/_align.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/parser.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/utils.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/__main__.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/tokenizer.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/modifiers.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/info.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/steps.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/predicates.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/files.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/_match_tables.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/_align.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/runners.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/align.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/kmer_heuristic.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/log.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/pipeline.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/__init__.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/info.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/adapters.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/report.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/statistics.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-313/cutadapt/cli.py -> build/bdist.linux-aarch64/wheel/./cutadapt
running install_egg_info
Copying src/cutadapt.egg-info to build/bdist.linux-aarch64/wheel/./cutadapt-4.7.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/cutadapt-4.7.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_cutadapt/.tmp-iadyi732/cutadapt-4.7-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'cutadapt/__init__.py'
adding 'cutadapt/__main__.py'
adding 'cutadapt/_align.cpython-313-aarch64-linux-gnu.so'
adding 'cutadapt/_align.pyi'
adding 'cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so'
adding 'cutadapt/_kmer_finder.pyi'
adding 'cutadapt/_match_tables.py'
adding 'cutadapt/_version.py'
adding 'cutadapt/adapters.py'
adding 'cutadapt/align.py'
adding 'cutadapt/cli.py'
adding 'cutadapt/files.py'
adding 'cutadapt/info.cpython-313-aarch64-linux-gnu.so'
adding 'cutadapt/info.pyi'
adding 'cutadapt/json.py'
adding 'cutadapt/kmer_heuristic.py'
adding 'cutadapt/log.py'
adding 'cutadapt/modifiers.py'
adding 'cutadapt/parser.py'
adding 'cutadapt/pipeline.py'
adding 'cutadapt/predicates.py'
adding 'cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so'
adding 'cutadapt/qualtrim.pyi'
adding 'cutadapt/report.py'
adding 'cutadapt/runners.py'
adding 'cutadapt/statistics.py'
adding 'cutadapt/steps.py'
adding 'cutadapt/tokenizer.py'
adding 'cutadapt/utils.py'
adding 'cutadapt-4.7.dist-info/LICENSE'
adding 'cutadapt-4.7.dist-info/METADATA'
adding 'cutadapt-4.7.dist-info/WHEEL'
adding 'cutadapt-4.7.dist-info/entry_points.txt'
adding 'cutadapt-4.7.dist-info/top_level.txt'
adding 'cutadapt-4.7.dist-info/RECORD'
removing build/bdist.linux-aarch64/wheel
Successfully built cutadapt-4.7-cp313-cp313-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_cutadapt
* Building wheel...
running bdist_wheel
running build
running build_py
creating build/lib.linux-aarch64-cpython-312
creating build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/_version.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/json.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/parser.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/utils.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/__main__.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/tokenizer.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/modifiers.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/steps.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/predicates.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/files.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/_match_tables.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/runners.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/align.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/kmer_heuristic.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/log.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/pipeline.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/__init__.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/adapters.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/report.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/statistics.py -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/cli.py -> build/lib.linux-aarch64-cpython-312/cutadapt
running egg_info
writing src/cutadapt.egg-info/PKG-INFO
writing dependency_links to src/cutadapt.egg-info/dependency_links.txt
writing entry points to src/cutadapt.egg-info/entry_points.txt
writing requirements to src/cutadapt.egg-info/requires.txt
writing top-level names to src/cutadapt.egg-info/top_level.txt
reading manifest file 'src/cutadapt.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'CITATION'
adding license file 'LICENSE'
writing manifest file 'src/cutadapt.egg-info/SOURCES.txt'
copying src/cutadapt/_align.pyi -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/_kmer_finder.pyi -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/info.pyi -> build/lib.linux-aarch64-cpython-312/cutadapt
copying src/cutadapt/qualtrim.pyi -> build/lib.linux-aarch64-cpython-312/cutadapt
running build_ext
building 'cutadapt._align' extension
creating build/temp.linux-aarch64-cpython-312
creating build/temp.linux-aarch64-cpython-312/src
creating build/temp.linux-aarch64-cpython-312/src/cutadapt
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/cutadapt/_align.c -o build/temp.linux-aarch64-cpython-312/src/cutadapt/_align.o
In function ‘__pyx_pf_8cutadapt_6_align_7Aligner_12locate’,
inlined from ‘__pyx_pw_8cutadapt_6_align_7Aligner_13locate’ at src/cutadapt/_align.c:6596:13:
src/cutadapt/_align.c:7567:36: warning: ‘__pyx_v_origin’ may be used uninitialized [-Wmaybe-uninitialized]
7567 | __pyx_t_13 = (__pyx_v_origin <= (__pyx_v_best.origin + __Pyx_div_long(__pyx_v_m, 2)));
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
src/cutadapt/_align.c: In function ‘__pyx_pw_8cutadapt_6_align_7Aligner_13locate’:
src/cutadapt/_align.c:6633:7: note: ‘__pyx_v_origin’ was declared here
6633 | int __pyx_v_origin;
| ^~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/cutadapt/_align.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/cutadapt/_align.cpython-312-aarch64-linux-gnu.so
building 'cutadapt.qualtrim' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/cutadapt/qualtrim.c -o build/temp.linux-aarch64-cpython-312/src/cutadapt/qualtrim.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/cutadapt/qualtrim.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/cutadapt/qualtrim.cpython-312-aarch64-linux-gnu.so
building 'cutadapt.info' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/cutadapt/info.c -o build/temp.linux-aarch64-cpython-312/src/cutadapt/info.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/cutadapt/info.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/cutadapt/info.cpython-312-aarch64-linux-gnu.so
building 'cutadapt._kmer_finder' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c src/cutadapt/_kmer_finder.c -o build/temp.linux-aarch64-cpython-312/src/cutadapt/_kmer_finder.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/src/cutadapt/_kmer_finder.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/cutadapt/_kmer_finder.cpython-312-aarch64-linux-gnu.so
installing to build/bdist.linux-aarch64/wheel
running install
running install_lib
creating build/bdist.linux-aarch64/wheel
creating build/bdist.linux-aarch64/wheel/cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/_version.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/qualtrim.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/_kmer_finder.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/json.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/_kmer_finder.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/parser.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/utils.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/__main__.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/tokenizer.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/modifiers.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/steps.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/info.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/predicates.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/files.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/_align.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/qualtrim.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/_match_tables.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/_align.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/runners.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/align.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/kmer_heuristic.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/log.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/pipeline.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/__init__.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/info.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/adapters.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/report.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/statistics.py -> build/bdist.linux-aarch64/wheel/./cutadapt
copying build/lib.linux-aarch64-cpython-312/cutadapt/cli.py -> build/bdist.linux-aarch64/wheel/./cutadapt
running install_egg_info
Copying src/cutadapt.egg-info to build/bdist.linux-aarch64/wheel/./cutadapt-4.7.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/cutadapt-4.7.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_cutadapt/.tmp-uifaai6f/cutadapt-4.7-cp312-cp312-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'cutadapt/__init__.py'
adding 'cutadapt/__main__.py'
adding 'cutadapt/_align.cpython-312-aarch64-linux-gnu.so'
adding 'cutadapt/_align.pyi'
adding 'cutadapt/_kmer_finder.cpython-312-aarch64-linux-gnu.so'
adding 'cutadapt/_kmer_finder.pyi'
adding 'cutadapt/_match_tables.py'
adding 'cutadapt/_version.py'
adding 'cutadapt/adapters.py'
adding 'cutadapt/align.py'
adding 'cutadapt/cli.py'
adding 'cutadapt/files.py'
adding 'cutadapt/info.cpython-312-aarch64-linux-gnu.so'
adding 'cutadapt/info.pyi'
adding 'cutadapt/json.py'
adding 'cutadapt/kmer_heuristic.py'
adding 'cutadapt/log.py'
adding 'cutadapt/modifiers.py'
adding 'cutadapt/parser.py'
adding 'cutadapt/pipeline.py'
adding 'cutadapt/predicates.py'
adding 'cutadapt/qualtrim.cpython-312-aarch64-linux-gnu.so'
adding 'cutadapt/qualtrim.pyi'
adding 'cutadapt/report.py'
adding 'cutadapt/runners.py'
adding 'cutadapt/statistics.py'
adding 'cutadapt/steps.py'
adding 'cutadapt/tokenizer.py'
adding 'cutadapt/utils.py'
adding 'cutadapt-4.7.dist-info/LICENSE'
adding 'cutadapt-4.7.dist-info/METADATA'
adding 'cutadapt-4.7.dist-info/WHEEL'
adding 'cutadapt-4.7.dist-info/entry_points.txt'
adding 'cutadapt-4.7.dist-info/top_level.txt'
adding 'cutadapt-4.7.dist-info/RECORD'
removing build/bdist.linux-aarch64/wheel
Successfully built cutadapt-4.7-cp312-cp312-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_cutadapt/build; python3.13 -m pytest -k 'not test_run_cutadapt_process'
============================= test session starts ==============================
platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_cutadapt/build
configfile: pyproject.toml
testpaths: tests
plugins: mock-3.14.0, typeguard-4.3.0, timeout-2.3.1
collected 669 items / 1 deselected / 668 selected
tests/test_adapters.py ......................................... [ 6%]
tests/test_align.py .................................................... [ 13%]
... [ 14%]
tests/test_api.py ...... [ 15%]
tests/test_command.py ........... [ 16%]
tests/test_commandline.py .............................................. [ 23%]
........................................................................ [ 34%]
.............................................................. [ 43%]
tests/test_files.py ......... [ 45%]
tests/test_kmer_finder.py .................... [ 48%]
tests/test_kmer_heuristic.py ............... [ 50%]
tests/test_main.py .... [ 51%]
tests/test_modifiers.py ....................................... [ 56%]
tests/test_paired.py ................................................... [ 64%]
........................................................................ [ 75%]
....................................................... [ 83%]
tests/test_parser.py ................................................. [ 90%]
tests/test_predicates.py ................. [ 93%]
tests/test_qualtrim.py ............................ [ 97%]
tests/test_report.py .. [ 97%]
tests/test_stats.py ... [ 98%]
tests/test_testutils.py .. [ 98%]
tests/test_tokenizer.py .. [ 98%]
tests/test_trim.py ... [ 99%]
tests/test_utils.py .... [100%]
====================== 668 passed, 1 deselected in 27.06s ======================
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_cutadapt/build; python3.12 -m pytest -k 'not test_run_cutadapt_process'
============================= test session starts ==============================
platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_cutadapt/build
configfile: pyproject.toml
testpaths: tests
plugins: mock-3.14.0, typeguard-4.3.0, timeout-2.3.1
collected 669 items / 1 deselected / 668 selected
tests/test_adapters.py ......................................... [ 6%]
tests/test_align.py .................................................... [ 13%]
... [ 14%]
tests/test_api.py ...... [ 15%]
tests/test_command.py ........... [ 16%]
tests/test_commandline.py .............................................. [ 23%]
........................................................................ [ 34%]
.............................................................. [ 43%]
tests/test_files.py ......... [ 45%]
tests/test_kmer_finder.py .................... [ 48%]
tests/test_kmer_heuristic.py ............... [ 50%]
tests/test_main.py .... [ 51%]
tests/test_modifiers.py ....................................... [ 56%]
tests/test_paired.py ................................................... [ 64%]
........................................................................ [ 75%]
....................................................... [ 83%]
tests/test_parser.py ................................................. [ 90%]
tests/test_predicates.py ................. [ 93%]
tests/test_qualtrim.py ............................ [ 97%]
tests/test_report.py .. [ 97%]
tests/test_stats.py ... [ 98%]
tests/test_testutils.py .. [ 98%]
tests/test_tokenizer.py .. [ 98%]
tests/test_trim.py ... [ 99%]
tests/test_utils.py .... [100%]
====================== 668 passed, 1 deselected in 26.81s ======================
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir
I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
debian/rules execute_after_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p debian/cutadapt/usr/bin
mv debian/python3-cutadapt/usr/bin/cutadapt debian/cutadapt/usr/bin/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-cutadapt' in '../python3-cutadapt_4.7-2+bd1_arm64.deb'.
dpkg-deb: building package 'python3-cutadapt-dbgsym' in '../python3-cutadapt-dbgsym_4.7-2+bd1_arm64.deb'.
dpkg-genbuildinfo --build=any -O../python-cutadapt_4.7-2+bd1_arm64.buildinfo
dpkg-genchanges --build=any -mDebusine Rebuild <debusine@example.net> -O../python-cutadapt_4.7-2+bd1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-10-24T08:51:16Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
python-cutadapt_4.7-2+bd1_arm64.changes:
----------------------------------------
Format: 1.8
Date: Thu, 24 Oct 2024 08:49:32 +0000
Source: python-cutadapt (4.7-2)
Binary: python3-cutadapt python3-cutadapt-dbgsym
Binary-Only: yes
Architecture: arm64
Version: 4.7-2+bd1
Distribution: sid
Urgency: low
Maintainer: Debusine Rebuild <debusine@example.net>
Changed-By: Debusine Rebuild <debusine@example.net>
Description:
python3-cutadapt - Clean biological sequences from high-throughput sequencing reads
Changes:
python-cutadapt (4.7-2+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
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Files:
7ba2ff47a34c0ceee7dbcbfc999a4950 7526 python optional python-cutadapt_4.7-2+bd1_arm64.buildinfo
a4c015b81e662065515985a6d92b28d7 1305004 debug optional python3-cutadapt-dbgsym_4.7-2+bd1_arm64.deb
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: python-cutadapt (4.7-2)
Binary: python3-cutadapt python3-cutadapt-dbgsym
Architecture: arm64
Version: 4.7-2+bd1
Binary-Only-Changes:
python-cutadapt (4.7-2+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
.
-- Debusine Rebuild <debusine@example.net> Thu, 24 Oct 2024 08:49:32 +0000
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Thu, 24 Oct 2024 08:51:15 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.5),
bash (= 5.2.32-1+b2),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-9),
bsdutils (= 1:2.40.2-9),
build-essential (= 12.12),
bzip2 (= 1.0.8-6),
coreutils (= 9.5-1),
cpp (= 4:14.2.0-1),
cpp-14 (= 14.2.0-7),
cpp-14-aarch64-linux-gnu (= 14.2.0-7),
cpp-aarch64-linux-gnu (= 4:14.2.0-1),
cython3 (= 3.0.11+dfsg-1),
dash (= 0.5.12-9),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.20),
dh-autoreconf (= 20),
dh-python (= 6.20240824),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.11),
dpkg-dev (= 1.22.11),
dwz (= 0.15-1+b1),
file (= 1:5.45-3),
findutils (= 4.10.0-3),
g++ (= 4:14.2.0-1),
g++-14 (= 14.2.0-7),
g++-14-aarch64-linux-gnu (= 14.2.0-7),
g++-aarch64-linux-gnu (= 4:14.2.0-1),
gcc (= 4:14.2.0-1),
gcc-14 (= 14.2.0-7),
gcc-14-aarch64-linux-gnu (= 14.2.0-7),
gcc-14-base (= 14.2.0-7),
gcc-aarch64-linux-gnu (= 4:14.2.0-1),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1),
hostname (= 3.25),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-7),
libatomic1 (= 14.2.0-7),
libattr1 (= 1:2.5.2-2),
libaudit-common (= 1:4.0.1-1),
libaudit1 (= 1:4.0.1-1),
libbinutils (= 2.43.1-5),
libblkid1 (= 2.40.2-9),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-3),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14.2.0-7),
libcom-err2 (= 1.47.1-1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdebconfclient0 (= 0.272),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.11),
libelf1t64 (= 0.192-4),
libexpat1 (= 2.6.3-1),
libexpat1-dev (= 2.6.3-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-7),
libgcc-s1 (= 14.2.0-7),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgmp10 (= 2:6.3.0+dfsg-2+b1),
libgomp1 (= 14.2.0-7),
libgprofng0 (= 2.43.1-5),
libgssapi-krb5-2 (= 1.21.3-3),
libhwasan0 (= 14.2.0-7),
libicu72 (= 72.1-5),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-7),
libjansson4 (= 2.14-2+b2),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-sphinxdoc (= 7.4.7-3),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
libk5crypto3 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-3.1),
libkrb5-3 (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
liblsan0 (= 14.2.0-7),
liblzma5 (= 5.6.2-2),
libmagic-mgc (= 1:5.45-3),
libmagic1t64 (= 1:5.45-3),
libmd0 (= 1.1.0-2),
libmount1 (= 2.40.2-9),
libmpc3 (= 1.3.1-1+b2),
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libncursesw6 (= 6.5-2),
libnsl2 (= 1.3.0-3+b2),
libpam-modules (= 1.5.3-7),
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libpam-runtime (= 1.5.3-7),
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libpcre2-8-0 (= 10.42-4+b1),
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libpython3-all-dev (= 3.12.6-1+debusine1),
libpython3-dev (= 3.12.6-1+debusine1),
libpython3-stdlib (= 3.12.6-1+debusine1),
libpython3.12-dev (= 3.12.7-1),
libpython3.12-minimal (= 3.12.7-1),
libpython3.12-stdlib (= 3.12.7-1),
libpython3.12t64 (= 3.12.7-1),
libpython3.13 (= 3.13.0-1),
libpython3.13-dev (= 3.13.0-1),
libpython3.13-minimal (= 3.13.0-1),
libpython3.13-stdlib (= 3.13.0-1),
libreadline8t64 (= 8.2-5),
libseccomp2 (= 2.5.5-1+b1),
libselinux1 (= 3.7-3),
libsframe1 (= 2.43.1-5),
libsmartcols1 (= 2.40.2-9),
libsqlite3-0 (= 3.46.1-1),
libssl3t64 (= 3.3.2-1),
libstdc++-14-dev (= 14.2.0-7),
libstdc++6 (= 14.2.0-7),
libsystemd0 (= 256.7-2),
libtinfo6 (= 6.5-2),
libtirpc-common (= 1.3.4+ds-1.3),
libtirpc3t64 (= 1.3.4+ds-1.3),
libtool (= 2.4.7-7),
libtsan2 (= 14.2.0-7),
libubsan1 (= 14.2.0-7),
libuchardet0 (= 0.0.8-1+b1),
libudev1 (= 256.7-2),
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libxml2 (= 2.12.7+dfsg+really2.9.14-0.1),
libzstd1 (= 1.5.6+dfsg-1),
linux-libc-dev (= 6.11.4-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
media-types (= 10.1.0),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2),
netbase (= 6.4),
openssl-provider-legacy (= 3.3.2-1),
patch (= 2.7.6-7),
perl (= 5.40.0-6),
perl-base (= 5.40.0-6),
perl-modules-5.40 (= 5.40.0-6),
pigz (= 2.8-1),
po-debconf (= 1.0.21+nmu1),
pybuild-plugin-pyproject (= 6.20240824),
python3 (= 3.12.6-1+debusine1),
python3-all (= 3.12.6-1+debusine1),
python3-all-dev (= 3.12.6-1+debusine1),
python3-autocommand (= 2.2.2-3),
python3-build (= 1.2.2-1),
python3-dev (= 3.12.6-1+debusine1),
python3-dnaio (= 1.2.2-1+bd1),
python3-inflect (= 7.3.1-2),
python3-iniconfig (= 1.1.1-2),
python3-installer (= 0.7.0+dfsg1-3),
python3-jaraco.context (= 6.0.0-1),
python3-jaraco.functools (= 4.1.0-1),
python3-minimal (= 3.12.6-1+debusine1),
python3-more-itertools (= 10.5.0-1),
python3-packaging (= 24.1-1),
python3-pkg-resources (= 74.1.2-2),
python3-pluggy (= 1.5.0-1),
python3-pyproject-hooks (= 1.1.0-2),
python3-pytest (= 8.3.3-1),
python3-pytest-mock (= 3.14.0-1),
python3-pytest-timeout (= 2.3.1-1),
python3-setuptools (= 74.1.2-2),
python3-setuptools-scm (= 8.1.0-1),
python3-toml (= 0.10.2-1),
python3-typeguard (= 4.3.0-1),
python3-typing-extensions (= 4.12.2-2),
python3-wheel (= 0.44.0-2),
python3-xopen (= 1.7.0-2),
python3-zipp (= 3.20.2-1),
python3.12 (= 3.12.7-1),
python3.12-dev (= 3.12.7-1),
python3.12-minimal (= 3.12.7-1),
python3.13 (= 3.13.0-1),
python3.13-dev (= 3.13.0-1),
python3.13-minimal (= 3.13.0-1),
readline-common (= 8.2-5),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
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tar (= 1.35+dfsg-3),
tzdata (= 2024b-3),
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Environment:
DEB_BUILD_OPTIONS="parallel=16"
LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1729759772"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-cutadapt-dbgsym_4.7-2+bd1_arm64.deb
-------------------------------------------
new Debian package, version 2.0.
size 1305004 bytes: control archive=960 bytes.
705 bytes, 12 lines control
942 bytes, 9 lines md5sums
Package: python3-cutadapt-dbgsym
Source: python-cutadapt (4.7-2)
Version: 4.7-2+bd1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1453
Depends: python3-cutadapt (= 4.7-2+bd1)
Section: debug
Priority: optional
Description: debug symbols for python3-cutadapt
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drwxr-xr-x root/root 0 2024-10-24 08:49 ./usr/lib/debug/.build-id/f8/
-rw-r--r-- root/root 131696 2024-10-24 08:49 ./usr/lib/debug/.build-id/f8/9a5bee2059ff3af398631063890c5c6f0bc8b6.debug
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drwxr-xr-x root/root 0 2024-10-24 08:49 ./usr/share/
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lrwxrwxrwx root/root 0 2024-10-24 08:49 ./usr/share/doc/python3-cutadapt-dbgsym -> python3-cutadapt
python3-cutadapt_4.7-2+bd1_arm64.deb
------------------------------------
new Debian package, version 2.0.
size 215492 bytes: control archive=2292 bytes.
944 bytes, 20 lines control
3849 bytes, 42 lines md5sums
279 bytes, 12 lines * postinst #!/bin/sh
392 bytes, 12 lines * prerm #!/bin/sh
Package: python3-cutadapt
Source: python-cutadapt (4.7-2)
Version: 4.7-2+bd1
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1205
Depends: python3 (<< 3.14), python3 (>= 3.12~), python3-dnaio (>= 1.2.0), python3-xopen, python3:any, libc6 (>= 2.17), pigz
Section: python
Priority: optional
Homepage: https://cutadapt.readthedocs.io/
Description: Clean biological sequences from high-throughput sequencing reads (Python 3)
Cutadapt helps with biological sequence clean tasks by finding the adapter
or primer sequences in an error-tolerant way.
It can also modify and filter reads in various ways.
Adapter sequences can contain IUPAC wildcard characters.
Also, paired-end reads and even colorspace data is supported.
If you want, you can also just demultiplex your input data, without removing
adapter sequences at all.
.
This package contains the Python 3 module.
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