sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-07.freexian.com
+==============================================================================+
| libslow5lib 0.7.0+dfsg-3+bd1 (arm64) Thu, 24 Oct 2024 17:41:19 +0000 |
+==============================================================================+
Package: libslow5lib
Version: 0.7.0+dfsg-3+bd1
Source Version: 0.7.0+dfsg-3
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
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Reading package lists...
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The following packages will be upgraded:
apt base-passwd coreutils libapt-pkg6.0t64 libhtml-form-perl libkeyutils1
liblz1 libnet-ssleay-perl sysvinit-utils
9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:6 http://deb.debian.org/debian sid/main arm64 libhtml-form-perl all 6.12-1 [32.3 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get:8 http://deb.debian.org/debian sid/main arm64 liblz1 arm64 1.15~pre2-1 [38.1 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB]
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Local sources
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| Install package build dependencies |
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Setup apt archive
-----------------
Merged Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), dh-python, python3-all-dev, libstreamvbyte-dev, libzstd-dev, zlib1g-dev, cython3, python3-setuptools, python3-numpy, python3-wheel, build-essential, fakeroot, dumb-init
Filtered Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), dh-python, python3-all-dev, libstreamvbyte-dev, libzstd-dev, zlib1g-dev, cython3, python3-setuptools, python3-numpy, python3-wheel, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Reading package lists...
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Install main build dependencies (apt-based resolver)
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cmake cmake-data
cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 d-shlibs
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz
fakeroot g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libarchive13t64
libasan8 libblas3 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libcurl4t64
libdebhelper-perl libelf1t64 libexpat1 libexpat1-dev libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libhwasan0
libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp26
liblapack3 liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2 libproc2-0
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13
libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib librhash1
libstdc++-14-dev libstreamvbyte-dev libstreamvbyte0 libtirpc-common
libtirpc3t64 libtool libtsan2 libubsan1 libuv1t64 libzstd-dev linux-libc-dev
m4 media-types po-debconf procps python3 python3-all python3-all-dev
python3-autocommand python3-dev python3-inflect python3-jaraco.context
python3-jaraco.functools python3-jaraco.text python3-minimal
python3-more-itertools python3-numpy python3-pkg-resources
python3-setuptools python3-typeguard python3-typing-extensions python3-wheel
python3-zipp python3.12 python3.12-dev python3.12-minimal python3.13
python3.13-dev python3.13-minimal rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format
elpa-cmake-mode ninja-build cpp-doc gcc-14-locales cpp-14-doc cython-doc
dh-make flit python3-build python3-installer gcc-14-doc gcc-multilib
manpages-dev flex bison gdb gcc-doc gdb-aarch64-linux-gnu lrzip
libc-devtools glibc-doc libstdc++-14-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc libmail-box-perl python3-doc python3-tk
python3-venv gfortran python-numpy-doc python3-pytest python-setuptools-doc
python3.12-venv python3.12-doc binfmt-support python3.13-venv python3.13-doc
Recommended packages:
manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cmake cmake-data
cpp cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 d-shlibs
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz
fakeroot g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libarchive13t64
libasan8 libblas3 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libcurl4t64
libdebhelper-perl libelf1t64 libexpat1 libexpat1-dev libfakeroot
libfile-stripnondeterminism-perl libgcc-14-dev libgfortran5 libhwasan0
libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore libjsoncpp26
liblapack3 liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2 libproc2-0
libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13
libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib librhash1
libstdc++-14-dev libstreamvbyte-dev libstreamvbyte0 libtirpc-common
libtirpc3t64 libtool libtsan2 libubsan1 libuv1t64 libzstd-dev linux-libc-dev
m4 media-types po-debconf procps python3 python3-all python3-all-dev
python3-autocommand python3-dev python3-inflect python3-jaraco.context
python3-jaraco.functools python3-jaraco.text python3-minimal
python3-more-itertools python3-numpy python3-pkg-resources
python3-setuptools python3-typeguard python3-typing-extensions python3-wheel
python3-zipp python3.12 python3.12-dev python3.12-minimal python3.13
python3.13-dev python3.13-minimal rpcsvc-proto
sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 112 newly installed, 0 to remove and 0 not upgraded.
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Get:35 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7 [9164 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-7 [1280 B]
Get:41 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:42 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:43 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-7 [42.2 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-7 [24.2 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-7 [2578 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-7 [1162 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-7 [2386 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-7 [1040 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-7 [1442 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-7 [2365 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB]
Get:52 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB]
Get:53 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:54 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:55 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB]
Get:56 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB]
Get:57 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB]
Get:58 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:59 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:60 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:61 http://deb.debian.org/debian sid/main arm64 cmake-data all 3.30.5-1 [2223 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 libarchive13t64 arm64 3.7.4-1 [323 kB]
Get:63 http://deb.debian.org/debian sid/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 libjsoncpp26 arm64 1.9.6-2 [73.1 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 librhash1 arm64 1.4.5-1 [129 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 cmake arm64 3.30.5-1 [9403 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 d-shlibs all 0.107 [11.0 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:74 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:84 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 75.2.0-1 [731 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-7 [361 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 libstreamvbyte0 arm64 0.4.1-4+b1 [6028 B]
Get:107 http://deb.debian.org/debian sid/main arm64 libstreamvbyte-dev arm64 0.4.1-4+b1 [6744 B]
Get:108 http://deb.debian.org/debian sid/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [330 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 python3-wheel all 0.44.0-2 [53.4 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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Setting up python3-minimal (3.12.6-1+debusine1) ...
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.4-1
Package versions: appstream_1.0.3-1 apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 cmake_3.30.5-1 cmake-data_3.30.5-1 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-aarch64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-1+debusine1 d-shlibs_0.107 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-7 g++-14-aarch64-linux-gnu_14.2.0-7 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 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libpython3-stdlib_3.12.6-1+debusine1 libpython3.12-dev_3.12.7-1 libpython3.12-minimal_3.12.7-1 libpython3.12-stdlib_3.12.7-1 libpython3.12t64_3.12.7-1 libpython3.13_3.13.0-1 libpython3.13-dev_3.13.0-1 libpython3.13-minimal_3.13.0-1 libpython3.13-stdlib_3.13.0-1 libreadline8t64_8.2-5 libregexp-wildcards-perl_1.05-3 librhash1_1.4.5-1 librole-tiny-perl_2.002004-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsereal-decoder-perl_5.004+ds-1+b3 libsereal-encoder-perl_5.004+ds-1+b3 libsframe1_2.43.1-5 libsmartcols1_2.40.2-9 libsort-versions-perl_1.62-3 libsqlite3-0_3.46.1-1 libss2_1.47.1-1 libssh2-1t64_1.11.1-1 libssl3t64_3.3.2-1 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 libstemmer0d_2.2.0-4+b1 libstreamvbyte-dev_0.4.1-4+b1 libstreamvbyte0_0.4.1-4+b1 libstrictures-perl_2.000006-1 libsub-exporter-perl_0.990-1 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libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml2_2.12.7+dfsg+really2.9.14-0.1 libxmlb2_0.3.21-1 libxs-parse-keyword-perl_0.46-1+b1 libxxhash0_0.8.2-2+b1 libyaml-0-2_0.2.5-1+b1 libyaml-libyaml-perl_0.902.0+ds-2+b1 libzstd-dev_1.5.6+dfsg-1 libzstd1_1.5.6+dfsg-1 lintian_2.119.0 linux-libc-dev_6.11.4-1 login_1:4.16.0-2+really2.40.2-9 login.defs_1:4.16.0-4 logsave_1.47.1-1 lzop_1.04-2 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 media-types_10.1.0 mount_2.40.2-9 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.2-1 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 patchutils_0.4.2-1 perl_5.40.0-6 perl-base_5.40.0-6 perl-modules-5.40_5.40.0-6 perl-openssl-defaults_7+b2 plzip_1.11-2 po-debconf_1.0.21+nmu1 procps_2:4.0.4-6 python3_3.12.6-1+debusine1 python3-all_3.12.6-1+debusine1 python3-all-dev_3.12.6-1+debusine1 python3-autocommand_2.2.2-3 python3-dev_3.12.6-1+debusine1 python3-inflect_7.3.1-2 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-minimal_3.12.6-1+debusine1 python3-more-itertools_10.5.0-1 python3-numpy_1:1.26.4+ds-11+bootstrap1 python3-pkg-resources_75.2.0-1 python3-setuptools_75.2.0-1 python3-typeguard_4.3.0-1 python3-typing-extensions_4.12.2-2 python3-wheel_0.44.0-2 python3-zipp_3.20.2-1 python3.12_3.12.7-1 python3.12-dev_3.12.7-1 python3.12-minimal_3.12.7-1 python3.13_3.13.0-1 python3.13-dev_3.13.0-1 python3.13-minimal_3.13.0-1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 shared-mime-info_2.4-5+b1 sysvinit-utils_3.11-1 t1utils_1.41-4 tar_1.35+dfsg-3 tzdata_2024b-3 ucf_3.0043+nmu1 unzip_6.0-28 util-linux_2.40.2-9 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: libslow5lib
Binary: libslow5-0t64, libslow5-dev, python3-slow5
Architecture: any
Version: 0.7.0+dfsg-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/hasindu2008/slow5lib
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/libslow5lib
Vcs-Git: https://salsa.debian.org/med-team/libslow5lib.git
Testsuite: autopkgtest
Testsuite-Triggers: build-essential, libstreamvbyte-dev, python3-all, zlib1g-dev
Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), dh-python, python3-all-dev, libstreamvbyte-dev, libzstd-dev, zlib1g-dev, cython3, python3-setuptools, python3-numpy, python3-wheel
Package-List:
libslow5-0t64 deb libs optional arch=any
libslow5-dev deb libdevel optional arch=any
python3-slow5 deb python optional arch=any
Checksums-Sha1:
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ce7ad4d4a6430f9976ec1112e0cd228449696a2b 8348 libslow5lib_0.7.0+dfsg-3.debian.tar.xz
Checksums-Sha256:
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86f7e4fc9c2e8fce922fd3c70458ac1acb47ca36a0df439377dd5ce9da89497d 8348 libslow5lib_0.7.0+dfsg-3.debian.tar.xz
Files:
9bfd15ff3ab3938925d84fea770a8848 2014308 libslow5lib_0.7.0+dfsg.orig.tar.xz
a57a415a580274851179a1f061247bf0 8348 libslow5lib_0.7.0+dfsg-3.debian.tar.xz
Dgit: 52759902858a10731b15859bf5ad7b370cc0670c debian archive/debian/0.7.0+dfsg-3 https://git.dgit.debian.org/libslow5lib
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gpgv: Signature made Wed Jul 24 20:44:11 2024 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./libslow5lib_0.7.0+dfsg-3.dsc: no acceptable signature found
dpkg-source: info: extracting libslow5lib in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking libslow5lib_0.7.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking libslow5lib_0.7.0+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_streamvbyte.patch
dpkg-source: info: applying enable_shared_and_static.patch
dpkg-source: info: applying fix-baseline.patch
dpkg-source: info: applying hardening.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.7.0+dfsg-3+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package libslow5lib
dpkg-buildpackage: info: source version 0.7.0+dfsg-3+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --with python3 --buildsystem=cmake
dh_auto_clean -O--buildsystem=cmake
dh_autoreconf_clean -O--buildsystem=cmake
dh_clean -O--buildsystem=cmake
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=cmake
dh_update_autotools_config -a -O--buildsystem=cmake
dh_autoreconf -a -O--buildsystem=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
-DSLOW5_USE_ZSTD="ON"
cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DSLOW5_USE_ZSTD=ON ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done (1.0s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_FIND_USE_PACKAGE_REGISTRY
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu
dh_auto_configure --buildsystem=pybuild
I: pybuild base:311: dh_auto_configure --buildsystem=cmake --builddirectory=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_slow5/build -- -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.13 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.13/config-3.13-aarch64-linux-gnu/libpython3.13.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.13 -DPython_EXECUTABLE=/usr/bin/python3.13 -DPython_LIBRARY=/usr/lib/python3.13/config-3.13-aarch64-linux-gnu/libpython3.13.so -DPython_INCLUDE_DIR=/usr/include/python3.13 -DPython3_EXECUTABLE=/usr/bin/python3.13 -DPython3_LIBRARY=/usr/lib/python3.13/config-3.13-aarch64-linux-gnu/libpython3.13.so -DPython3_INCLUDE_DIR=/usr/include/python3.13
cd .pybuild/cpython3_3.13_slow5/build && PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.13 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.13/config-3.13-aarch64-linux-gnu/libpython3.13.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.13 -DPython_EXECUTABLE=/usr/bin/python3.13 -DPython_LIBRARY=/usr/lib/python3.13/config-3.13-aarch64-linux-gnu/libpython3.13.so -DPython_INCLUDE_DIR=/usr/include/python3.13 -DPython3_EXECUTABLE=/usr/bin/python3.13 -DPython3_LIBRARY=/usr/lib/python3.13/config-3.13-aarch64-linux-gnu/libpython3.13.so -DPython3_INCLUDE_DIR=/usr/include/python3.13 ../../..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done (1.0s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_FIND_USE_PACKAGE_REGISTRY
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
FETCHCONTENT_FULLY_DISCONNECTED
PYTHON_EXECUTABLE
PYTHON_INCLUDE_DIR
PYTHON_LIBRARY
Python3_EXECUTABLE
Python3_INCLUDE_DIR
Python3_LIBRARY
Python_EXECUTABLE
Python_INCLUDE_DIR
Python_LIBRARY
-- Build files have been written to: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_slow5/build
I: pybuild base:311: dh_auto_configure --buildsystem=cmake --builddirectory=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_slow5/build -- -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.12 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.12/config-3.12-aarch64-linux-gnu/libpython3.12.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.12 -DPython_EXECUTABLE=/usr/bin/python3.12 -DPython_LIBRARY=/usr/lib/python3.12/config-3.12-aarch64-linux-gnu/libpython3.12.so -DPython_INCLUDE_DIR=/usr/include/python3.12 -DPython3_EXECUTABLE=/usr/bin/python3.12 -DPython3_LIBRARY=/usr/lib/python3.12/config-3.12-aarch64-linux-gnu/libpython3.12.so -DPython3_INCLUDE_DIR=/usr/include/python3.12
cd .pybuild/cpython3_3.12_slow5/build && PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.12 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.12/config-3.12-aarch64-linux-gnu/libpython3.12.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.12 -DPython_EXECUTABLE=/usr/bin/python3.12 -DPython_LIBRARY=/usr/lib/python3.12/config-3.12-aarch64-linux-gnu/libpython3.12.so -DPython_INCLUDE_DIR=/usr/include/python3.12 -DPython3_EXECUTABLE=/usr/bin/python3.12 -DPython3_LIBRARY=/usr/lib/python3.12/config-3.12-aarch64-linux-gnu/libpython3.12.so -DPython3_INCLUDE_DIR=/usr/include/python3.12 ../../..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
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-- Detecting CXX compiler ABI info
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-- Check for working CXX compiler: /usr/bin/c++ - skipped
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-- Configuring done (0.9s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_FIND_USE_PACKAGE_REGISTRY
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
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PYTHON_EXECUTABLE
PYTHON_INCLUDE_DIR
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Python3_EXECUTABLE
Python3_INCLUDE_DIR
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/usr/bin/cc -D_GLIBCXX_DEBUG -I/<<PKGBUILDDIR>>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5.c.o -MF CMakeFiles/slow5_static.dir/src/slow5.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5.c.o -c /<<PKGBUILDDIR>>/src/slow5.c
/usr/bin/cc -D_GLIBCXX_DEBUG -I/<<PKGBUILDDIR>>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_press.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_press.c.o -c /<<PKGBUILDDIR>>/src/slow5_press.c
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/usr/bin/cc -D_GLIBCXX_DEBUG -I/<<PKGBUILDDIR>>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -c /<<PKGBUILDDIR>>/src/slow5_misc.c
/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/<<PKGBUILDDIR>>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5.c.o -MF CMakeFiles/slow5.dir/src/slow5.c.o.d -o CMakeFiles/slow5.dir/src/slow5.c.o -c /<<PKGBUILDDIR>>/src/slow5.c
/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/<<PKGBUILDDIR>>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5.dir/src/slow5_misc.c.o -c /<<PKGBUILDDIR>>/src/slow5_misc.c
/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/<<PKGBUILDDIR>>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_press.c.o -MF CMakeFiles/slow5.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5.dir/src/slow5_press.c.o -c /<<PKGBUILDDIR>>/src/slow5_press.c
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/usr/bin/cmake -E cmake_link_script CMakeFiles/slow5.dir/link.txt --verbose=1
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/usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libslow5.so.0 -o libslow5.so.0 CMakeFiles/slow5.dir/src/slow5.c.o CMakeFiles/slow5.dir/src/slow5_idx.c.o CMakeFiles/slow5.dir/src/slow5_misc.c.o CMakeFiles/slow5.dir/src/slow5_press.c.o -lzstd
/usr/bin/ranlib libslow5_static.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
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/usr/bin/cmake -E cmake_symlink_library libslow5.so.0 libslow5.so.0 libslow5.so
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[100%] Built target slow5
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
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for py in `py3versions -s`; do \
$py setup.py build; \
done
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running build
running build_ext
Compiling python/pyslow5.pyx because it changed.
[1/1] Cythonizing python/pyslow5.pyx
building 'pyslow5' extension
creating build/temp.linux-aarch64-cpython-313/python
creating build/temp.linux-aarch64-cpython-313/src
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c python/pyslow5.c -o build/temp.linux-aarch64-cpython-313/python/pyslow5.o -g -Wall -O2 -std=c99
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from python/pyslow5.c:1294:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_60write_record’:
python/pyslow5.c:42319:10: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized]
42319 | if (__pyx_t_7) {
| ^
python/pyslow5.c:40075:8: note: ‘__pyx_v_ret’ was declared here
40075 | long __pyx_v_ret;
| ^~~~~~~~~~~
python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_62write_record_batch’:
python/pyslow5.c:46426:14: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized]
46426 | if (__pyx_t_5) {
| ^
python/pyslow5.c:42930:8: note: ‘__pyx_v_ret’ was declared here
42930 | long __pyx_v_ret;
| ^~~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c python/slow5threads.c -o build/temp.linux-aarch64-cpython-313/python/slow5threads.o -g -Wall -O2 -std=c99
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c src/slow5.c -o build/temp.linux-aarch64-cpython-313/src/slow5.o -g -Wall -O2 -std=c99
src/slow5.c: In function ‘slow5_init’:
src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) {
| ^~
src/slow5.c: In function ‘slow5_init_empty’:
src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) {
| ^~
src/slow5.c: In function ‘slow5_get_mem’:
src/slow5.c:2460:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2460 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) {
| ^~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c src/slow5_idx.c -o build/temp.linux-aarch64-cpython-313/src/slow5_idx.o -g -Wall -O2 -std=c99
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c src/slow5_misc.c -o build/temp.linux-aarch64-cpython-313/src/slow5_misc.o -g -Wall -O2 -std=c99
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c src/slow5_press.c -o build/temp.linux-aarch64-cpython-313/src/slow5_press.o -g -Wall -O2 -std=c99
src/slow5_press.c: In function ‘slow5_fwrite_compress’:
src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
558 | if (bytes != size * nmemb || ferror(fp)) {
| ^~
src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
559 | if (bytes != size * nmemb) {
| ^~
src/slow5_press.c: In function ‘slow5_pread_depress_solo’:
src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
686 | if ((ret = pread(fd, raw, count, offset)) != count) {
| ^~
creating build/lib.linux-aarch64-cpython-313
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/python/pyslow5.o build/temp.linux-aarch64-cpython-313/python/slow5threads.o build/temp.linux-aarch64-cpython-313/src/slow5.o build/temp.linux-aarch64-cpython-313/src/slow5_idx.o build/temp.linux-aarch64-cpython-313/src/slow5_misc.o build/temp.linux-aarch64-cpython-313/src/slow5_press.o -L. -L/usr/lib/aarch64-linux-gnu -lm -lz -lstreamvbyte -o build/lib.linux-aarch64-cpython-313/pyslow5.cpython-313-aarch64-linux-gnu.so
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
running build
running build_ext
building 'pyslow5' extension
creating build/temp.linux-aarch64-cpython-312/python
creating build/temp.linux-aarch64-cpython-312/src
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c python/pyslow5.c -o build/temp.linux-aarch64-cpython-312/python/pyslow5.o -g -Wall -O2 -std=c99
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from python/pyslow5.c:1294:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_62write_record_batch’:
python/pyslow5.c:46426:14: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized]
46426 | if (__pyx_t_5) {
| ^
python/pyslow5.c:42930:8: note: ‘__pyx_v_ret’ was declared here
42930 | long __pyx_v_ret;
| ^~~~~~~~~~~
python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_60write_record’:
python/pyslow5.c:42319:10: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized]
42319 | if (__pyx_t_7) {
| ^
python/pyslow5.c:40075:8: note: ‘__pyx_v_ret’ was declared here
40075 | long __pyx_v_ret;
| ^~~~~~~~~~~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c python/slow5threads.c -o build/temp.linux-aarch64-cpython-312/python/slow5threads.o -g -Wall -O2 -std=c99
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5.c -o build/temp.linux-aarch64-cpython-312/src/slow5.o -g -Wall -O2 -std=c99
src/slow5.c: In function ‘slow5_init’:
src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) {
| ^~
src/slow5.c: In function ‘slow5_init_empty’:
src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) {
| ^~
src/slow5.c: In function ‘slow5_get_mem’:
src/slow5.c:2460:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2460 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) {
| ^~
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5_idx.c -o build/temp.linux-aarch64-cpython-312/src/slow5_idx.o -g -Wall -O2 -std=c99
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5_misc.c -o build/temp.linux-aarch64-cpython-312/src/slow5_misc.o -g -Wall -O2 -std=c99
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5_press.c -o build/temp.linux-aarch64-cpython-312/src/slow5_press.o -g -Wall -O2 -std=c99
src/slow5_press.c: In function ‘slow5_fwrite_compress’:
src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
558 | if (bytes != size * nmemb || ferror(fp)) {
| ^~
src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
559 | if (bytes != size * nmemb) {
| ^~
src/slow5_press.c: In function ‘slow5_pread_depress_solo’:
src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
686 | if ((ret = pread(fd, raw, count, offset)) != count) {
| ^~
creating build/lib.linux-aarch64-cpython-312
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/python/pyslow5.o build/temp.linux-aarch64-cpython-312/python/slow5threads.o build/temp.linux-aarch64-cpython-312/src/slow5.o build/temp.linux-aarch64-cpython-312/src/slow5_idx.o build/temp.linux-aarch64-cpython-312/src/slow5_misc.o build/temp.linux-aarch64-cpython-312/src/slow5_press.o -L. -L/usr/lib/aarch64-linux-gnu -lm -lz -lstreamvbyte -o build/lib.linux-aarch64-cpython-312/pyslow5.cpython-312-aarch64-linux-gnu.so
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p lib
cp -a obj-aarch64-linux-gnu/libslow5_static.a lib/libslow5.a
/usr/bin/make -C test zstd=1
make[2]: Entering directory '/<<PKGBUILDDIR>>/test'
mkdir bin
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ endian_test.c -o bin/endian_test -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_helpers.c -o bin/unit_test_helpers -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_press.c -o bin/unit_test_press -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_ascii.c -o bin/unit_test_ascii -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_binary.c -o bin/unit_test_binary -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ convert_slow5_test.c -o bin/convert_slow5_test -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_two_rg.c -o bin/unit_test_two_rg -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_lossless.c -o bin/unit_test_lossless -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_empty.c -o bin/unit_test_empty -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_enum.c -o bin/unit_test_enum -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd
make[2]: Leaving directory '/<<PKGBUILDDIR>>/test'
for pys in `py3versions -s`; do \
echo $pys; \
pydir=`$pys debian/get-pyver-dir.py`; \
echo $pydir; X=0; \
PYTHONPATH=`pwd`/build/$pydir $pys -m unittest -v python/test.py || X=$?; \
if [ "" != 0 ]; then exit $X; fi; \
done
python3.13
lib.linux-aarch64-cpython-313
test_nonExistant_aux (python.test.TestAUX.test_nonExistant_aux) ... [slow5_idx_init::INFO][1;34m Index file not found. Creating an index at 'examples/example2.slow5.idx'.[0m
24-Oct-24 17:44:28 - [WARNING]: get_read unknown aux name: noExistTest
ok
test_read_id (python.test.TestAUX.test_read_id) ... 24-Oct-24 17:44:28 - [WARNING]: get_read unknown aux name: noExistTest
ok
test_read_number (python.test.TestAUX.test_read_number) ... 24-Oct-24 17:44:28 - [WARNING]: get_read unknown aux name: noExistTest
ok
test_start_mux (python.test.TestAUX.test_start_mux) ... 24-Oct-24 17:44:28 - [WARNING]: get_read unknown aux name: noExistTest
ok
test_get_aux_names (python.test.TestAuxAll.test_get_aux_names) ... ok
test_get_aux_types (python.test.TestAuxAll.test_get_aux_types) ... ok
test_get_read_all_aux (python.test.TestAuxAll.test_get_read_all_aux) ... ok
test_seq_reads_pA_aux_all (python.test.TestAuxAll.test_seq_reads_pA_aux_all) ... ok
test_class_methods (python.test.TestBase.test_class_methods) ... [slow5_idx_init::INFO][1;34m Index file not found. Creating an index at 'examples/example.slow5.idx'.[0m
ok
test_digitisation (python.test.TestBase.test_digitisation) ... ok
test_len_raw_signal (python.test.TestBase.test_len_raw_signal) ... ok
test_offset (python.test.TestBase.test_offset) ... ok
test_pylen_signal (python.test.TestBase.test_pylen_signal) ... ok
test_range (python.test.TestBase.test_range) ... ok
test_read_group (python.test.TestBase.test_read_group) ... ok
test_read_id (python.test.TestBase.test_read_id) ... ok
test_read_type (python.test.TestBase.test_read_type) ... ok
test_sampling_rate (python.test.TestBase.test_sampling_rate) ... ok
test_signal (python.test.TestBase.test_signal) ... ok
test_get_all_headers (python.test.TestHeaders.test_get_all_headers) ... ok
test_get_header_names (python.test.TestHeaders.test_get_header_names) ... ok
test_digitisation (python.test.TestRandomAccess.test_digitisation) ... ok
test_len_raw_signal (python.test.TestRandomAccess.test_len_raw_signal) ... ok
test_offset (python.test.TestRandomAccess.test_offset) ... ok
test_pylen_signal (python.test.TestRandomAccess.test_pylen_signal) ... ok
test_range (python.test.TestRandomAccess.test_range) ... ok
test_read_group (python.test.TestRandomAccess.test_read_group) ... ok
test_read_id (python.test.TestRandomAccess.test_read_id) ... ok
test_sampling_rate (python.test.TestRandomAccess.test_sampling_rate) ... ok
test_signal (python.test.TestRandomAccess.test_signal) ... ok
test_seq_reads (python.test.TestSequentialRead.test_seq_reads) ... ok
test_get_empty_header (python.test.TestWrite.test_get_empty_header) ... ok
test_get_empty_record (python.test.TestWrite.test_get_empty_record) ... ok
test_write_header (python.test.TestWrite.test_write_header) ... ok
test_write_records (python.test.TestWrite.test_write_records) ... ok
test_get_empty_aux (python.test.TestWriteAux.test_get_empty_aux) ... ok
test_write_records_aux (python.test.TestWriteAux.test_write_records_aux) ... ok
test_write_matches_read (python.test.TestWriteData.test_write_matches_read) ... [slow5_idx_init::INFO][1;34m Index file not found. Creating an index at 'examples/example_write.slow5.idx'.[0m
ok
test_base_reads (python.test.TestYieldRead.test_base_reads) ... ok
test_reads_with_no_exist (python.test.TestYieldRead.test_reads_with_no_exist) ... [slow5_idx_get::ERROR][1;31m Read ID 'null_read' was not found.[0m At src/slow5_idx.c:441
ok
test_seq_reads_multi (python.test.testMultiThreading.test_seq_reads_multi) ... ok
test_get_reads_multi (python.test.testMultiThreadingRandom.test_get_reads_multi) ... ok
----------------------------------------------------------------------
Ran 42 tests in 0.387s
OK
r0
r1
r2
r3
r4
r5
0a238451-b9ed-446d-a152-badd074006c4
0d624d4b-671f-40b8-9798-84f2ccc4d7fc
r0
r1
r2
r3
r4
r5
0a238451-b9ed-446d-a152-badd074006c4
0d624d4b-671f-40b8-9798-84f2ccc4d7fc
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=cmake
dh_prep -a -O--buildsystem=cmake
dh_auto_install -a -O--buildsystem=cmake
cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/<<BUILDDIR>>/libslow5lib-0.7.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libslow5.so.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libslow5.so
-- Up-to-date: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libslow5.so.0
-- Up-to-date: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libslow5.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libslow5_static.a
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mv debian/tmp/usr/lib/aarch64-linux-gnu/libslow5_static.a debian/tmp/usr/lib/aarch64-linux-gnu/libslow5.a
d-shlibmove --commit \
--t64 \
--multiarch \
--devunversioned \
--exclude-la \
--movedev include usr \
debian/tmp/usr/lib/aarch64-linux-gnu/libslow5.so
Library package automatic movement utility
--> libzstd-dev package exists.
set -e
install -d -m 755 debian/libslow5-dev/usr/lib/aarch64-linux-gnu
install -d -m 755 debian/libslow5-0t64/usr/lib/aarch64-linux-gnu
mv debian/tmp/usr/lib/aarch64-linux-gnu/libslow5.a debian/libslow5-dev/usr/lib/aarch64-linux-gnu
mv debian/tmp/usr/lib/aarch64-linux-gnu/libslow5.so debian/libslow5-dev/usr/lib/aarch64-linux-gnu
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/aarch64-linux-gnu/libslow5.so.0 debian/libslow5-0t64/usr/lib/aarch64-linux-gnu
PKGDEV=libslow5-dev
PKGSHL=libslow5-0t64
install -d -m 755 debian/libslow5-dev/usr
mv include debian/libslow5-dev/usr
dh_install
dh_install -plibslow5-dev src/*.h usr/include/slow5/
dh_install -ppython3-slow5 build/lib.*-*/* usr/lib/python3/dist-packages/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules execute_after_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_numpy3
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=cmake
dh_installchangelogs -a -O--buildsystem=cmake
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installexamples
dh_installexamples -ppython3-slow5 python/example.py
dh_installexamples -ppython3-slow5 examples/*.slow5
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_python3 -a -O--buildsystem=cmake
dh_installsystemduser -a -O--buildsystem=cmake
dh_lintian -a -O--buildsystem=cmake
dh_perl -a -O--buildsystem=cmake
dh_link -a -O--buildsystem=cmake
dh_strip_nondeterminism -a -O--buildsystem=cmake
dh_compress -a -O--buildsystem=cmake
dh_fixperms -a -O--buildsystem=cmake
dh_missing -a -O--buildsystem=cmake
dh_dwz -a -O--buildsystem=cmake
dh_strip -a -O--buildsystem=cmake
dh_makeshlibs -a -O--buildsystem=cmake
dh_shlibdeps -a -O--buildsystem=cmake
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dpkg-shlibdeps: warning: symbol deflateInit2_ used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol deflateEnd used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol inflateReset used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol deflateReset used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol zigzag_delta_encode used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol zigzag_delta_decode used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol streamvbyte_encode used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries
dpkg-shlibdeps: warning: symbol deflate used by debian/libslow5-0t64/usr/lib/aarch64-linux-gnu/libslow5.so.0 found in none of the libraries
dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all)
dh_installdeb -a -O--buildsystem=cmake
dh_gencontrol -a -O--buildsystem=cmake
dpkg-gencontrol: warning: Depends field of package libslow5-dev: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${devlibs:Depends} unused, but is defined
dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package libslow5-0t64: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package libslow5-0t64: substitution variable ${python3:Depends} unused, but is defined
dh_md5sums -a -O--buildsystem=cmake
dh_builddeb -a -O--buildsystem=cmake
dpkg-deb: building package 'python3-slow5' in '../python3-slow5_0.7.0+dfsg-3+bd1_arm64.deb'.
dpkg-deb: building package 'libslow5-0t64' in '../libslow5-0t64_0.7.0+dfsg-3+bd1_arm64.deb'.
dpkg-deb: building package 'libslow5-0t64-dbgsym' in '../libslow5-0t64-dbgsym_0.7.0+dfsg-3+bd1_arm64.deb'.
dpkg-deb: building package 'libslow5-dev' in '../libslow5-dev_0.7.0+dfsg-3+bd1_arm64.deb'.
dpkg-deb: building package 'python3-slow5-dbgsym' in '../python3-slow5-dbgsym_0.7.0+dfsg-3+bd1_arm64.deb'.
dpkg-genbuildinfo --build=any -O../libslow5lib_0.7.0+dfsg-3+bd1_arm64.buildinfo
dpkg-genchanges --build=any -mDebusine Rebuild <debusine@example.net> -O../libslow5lib_0.7.0+dfsg-3+bd1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-10-24T17:44:37Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
libslow5lib_0.7.0+dfsg-3+bd1_arm64.changes:
-------------------------------------------
Format: 1.8
Date: Thu, 24 Oct 2024 17:42:43 +0000
Source: libslow5lib (0.7.0+dfsg-3)
Binary: libslow5-0t64 libslow5-0t64-dbgsym libslow5-dev python3-slow5 python3-slow5-dbgsym
Binary-Only: yes
Architecture: arm64
Version: 0.7.0+dfsg-3+bd1
Distribution: sid
Urgency: low
Maintainer: Debusine Rebuild <debusine@example.net>
Changed-By: Debusine Rebuild <debusine@example.net>
Description:
libslow5-0t64 - library for reading & writing SLOW5 files
libslow5-dev - header and static library for reading & writing SLOW5 files
python3-slow5 - Python3 modul for reading & writing SLOW5 files
Changes:
libslow5lib (0.7.0+dfsg-3+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
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Files:
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d84979ebaa756fda166b892e3b8413e8 54664 libs optional libslow5-0t64_0.7.0+dfsg-3+bd1_arm64.deb
801a24ec7764f6fcc478c2276dd7451b 79760 libdevel optional libslow5-dev_0.7.0+dfsg-3+bd1_arm64.deb
efd3ab3117f8c0d376167310c1bfd16b 9150 science optional libslow5lib_0.7.0+dfsg-3+bd1_arm64.buildinfo
93e8e194cae4a106c7c9ed9a3cb1a91f 2675820 debug optional python3-slow5-dbgsym_0.7.0+dfsg-3+bd1_arm64.deb
6d6be6fb655c0107a664a75d64e7cda3 469912 python optional python3-slow5_0.7.0+dfsg-3+bd1_arm64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: libslow5lib (0.7.0+dfsg-3)
Binary: libslow5-0t64 libslow5-0t64-dbgsym libslow5-dev python3-slow5 python3-slow5-dbgsym
Architecture: arm64
Version: 0.7.0+dfsg-3+bd1
Binary-Only-Changes:
libslow5lib (0.7.0+dfsg-3+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
.
-- Debusine Rebuild <debusine@example.net> Thu, 24 Oct 2024 17:42:43 +0000
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Thu, 24 Oct 2024 17:44:37 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
apt (= 2.9.10),
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.5),
bash (= 5.2.32-1+b2),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-9),
bsdutils (= 1:2.40.2-9),
build-essential (= 12.12),
bzip2 (= 1.0.8-6),
cmake (= 3.30.5-1),
cmake-data (= 3.30.5-1),
coreutils (= 9.5-1),
cpp (= 4:14.2.0-1),
cpp-14 (= 14.2.0-7),
cpp-14-aarch64-linux-gnu (= 14.2.0-7),
cpp-aarch64-linux-gnu (= 4:14.2.0-1),
cython3 (= 3.0.11+dfsg-1+debusine1),
d-shlibs (= 0.107),
dash (= 0.5.12-9),
debconf (= 1.5.87),
debhelper (= 13.20),
debian-archive-keyring (= 2023.4),
debianutils (= 5.20),
dh-autoreconf (= 20),
dh-python (= 6.20240824),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.11),
dpkg-dev (= 1.22.11),
dwz (= 0.15-1+b1),
file (= 1:5.45-3),
findutils (= 4.10.0-3),
g++ (= 4:14.2.0-1),
g++-14 (= 14.2.0-7),
g++-14-aarch64-linux-gnu (= 14.2.0-7),
g++-aarch64-linux-gnu (= 4:14.2.0-1),
gcc (= 4:14.2.0-1),
gcc-14 (= 14.2.0-7),
gcc-14-aarch64-linux-gnu (= 14.2.0-7),
gcc-14-base (= 14.2.0-7),
gcc-aarch64-linux-gnu (= 4:14.2.0-1),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
gpgv (= 2.2.44-1),
grep (= 3.11-4),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1),
hostname (= 3.25),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2),
libapt-pkg6.0t64 (= 2.9.10),
libarchive-zip-perl (= 1.68-1),
libarchive13t64 (= 3.7.4-1),
libasan8 (= 14.2.0-7),
libatomic1 (= 14.2.0-7),
libattr1 (= 1:2.5.2-2),
libaudit-common (= 1:4.0.1-1),
libaudit1 (= 1:4.0.1-1),
libbinutils (= 2.43.1-5),
libblas3 (= 3.12.0-3),
libblkid1 (= 2.40.2-9),
libbrotli1 (= 1.1.0-2+b4),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-3),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14.2.0-7),
libcom-err2 (= 1.47.1-1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libcurl4t64 (= 8.10.1-2),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdebconfclient0 (= 0.272),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.11),
libelf1t64 (= 0.192-4),
libexpat1 (= 2.6.3-1),
libexpat1-dev (= 2.6.3-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-7),
libgcc-s1 (= 14.2.0-7),
libgcrypt20 (= 1.11.0-6),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgfortran5 (= 14.2.0-7),
libgmp10 (= 2:6.3.0+dfsg-2+b1),
libgnutls30t64 (= 3.8.6-2),
libgomp1 (= 14.2.0-7),
libgpg-error0 (= 1.50-4),
libgprofng0 (= 2.43.1-5),
libgssapi-krb5-2 (= 1.21.3-3),
libhogweed6t64 (= 3.10-1),
libhwasan0 (= 14.2.0-7),
libicu72 (= 72.1-5),
libidn2-0 (= 2.3.7-2),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-7),
libjansson4 (= 2.14-2+b2),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-sphinxdoc (= 7.4.7-3),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
libjsoncpp26 (= 1.9.6-2),
libk5crypto3 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-4),
libkrb5-3 (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
liblapack3 (= 3.12.0-3),
libldap-2.5-0 (= 2.5.18+dfsg-3+b1),
liblsan0 (= 14.2.0-7),
liblz4-1 (= 1.9.4-3),
liblzma5 (= 5.6.2-2),
libmagic-mgc (= 1:5.45-3),
libmagic1t64 (= 1:5.45-3),
libmd0 (= 1.1.0-2),
libmount1 (= 2.40.2-9),
libmpc3 (= 1.3.1-1+b2),
libmpfr6 (= 4.2.1-1+b1),
libncursesw6 (= 6.5-2),
libnettle8t64 (= 3.10-1),
libnghttp2-14 (= 1.63.0-1),
libnsl2 (= 1.3.0-3+b2),
libp11-kit0 (= 0.25.5-2),
libpam-modules (= 1.5.3-7),
libpam-modules-bin (= 1.5.3-7),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7),
libpcre2-8-0 (= 10.42-4+b1),
libperl5.40 (= 5.40.0-6),
libpipeline1 (= 1.5.8-1),
libproc2-0 (= 2:4.0.4-6),
libpsl5t64 (= 0.21.2-1.1),
libpython3-all-dev (= 3.12.6-1+debusine1),
libpython3-dev (= 3.12.6-1+debusine1),
libpython3-stdlib (= 3.12.6-1+debusine1),
libpython3.12-dev (= 3.12.7-1),
libpython3.12-minimal (= 3.12.7-1),
libpython3.12-stdlib (= 3.12.7-1),
libpython3.12t64 (= 3.12.7-1),
libpython3.13 (= 3.13.0-1),
libpython3.13-dev (= 3.13.0-1),
libpython3.13-minimal (= 3.13.0-1),
libpython3.13-stdlib (= 3.13.0-1),
libreadline8t64 (= 8.2-5),
librhash1 (= 1.4.5-1),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4),
libsasl2-2 (= 2.1.28+dfsg1-8),
libsasl2-modules-db (= 2.1.28+dfsg1-8),
libseccomp2 (= 2.5.5-1+b1),
libselinux1 (= 3.7-3),
libsframe1 (= 2.43.1-5),
libsmartcols1 (= 2.40.2-9),
libsqlite3-0 (= 3.46.1-1),
libssh2-1t64 (= 1.11.1-1),
libssl3t64 (= 3.3.2-1),
libstdc++-14-dev (= 14.2.0-7),
libstdc++6 (= 14.2.0-7),
libstreamvbyte-dev (= 0.4.1-4+b1),
libstreamvbyte0 (= 0.4.1-4+b1),
libsystemd0 (= 256.7-2),
libtasn1-6 (= 4.19.0-3+b2),
libtinfo6 (= 6.5-2),
libtirpc-common (= 1.3.4+ds-1.3),
libtirpc3t64 (= 1.3.4+ds-1.3),
libtool (= 2.4.7-7),
libtsan2 (= 14.2.0-7),
libubsan1 (= 14.2.0-7),
libuchardet0 (= 0.0.8-1+b1),
libudev1 (= 256.7-2),
libunistring5 (= 1.2-1),
libuuid1 (= 2.40.2-9),
libuv1t64 (= 1.48.0-6),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.1),
libxxhash0 (= 0.8.2-2+b1),
libzstd-dev (= 1.5.6+dfsg-1),
libzstd1 (= 1.5.6+dfsg-1),
linux-libc-dev (= 6.11.4-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
media-types (= 10.1.0),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2),
netbase (= 6.4),
openssl-provider-legacy (= 3.3.2-1),
patch (= 2.7.6-7),
perl (= 5.40.0-6),
perl-base (= 5.40.0-6),
perl-modules-5.40 (= 5.40.0-6),
po-debconf (= 1.0.21+nmu1),
procps (= 2:4.0.4-6),
python3 (= 3.12.6-1+debusine1),
python3-all (= 3.12.6-1+debusine1),
python3-all-dev (= 3.12.6-1+debusine1),
python3-autocommand (= 2.2.2-3),
python3-dev (= 3.12.6-1+debusine1),
python3-inflect (= 7.3.1-2),
python3-jaraco.context (= 6.0.0-1),
python3-jaraco.functools (= 4.1.0-1),
python3-jaraco.text (= 4.0.0-1),
python3-minimal (= 3.12.6-1+debusine1),
python3-more-itertools (= 10.5.0-1),
python3-numpy (= 1:1.26.4+ds-11+bootstrap1),
python3-pkg-resources (= 75.2.0-1),
python3-setuptools (= 75.2.0-1),
python3-typeguard (= 4.3.0-1),
python3-typing-extensions (= 4.12.2-2),
python3-wheel (= 0.44.0-2),
python3-zipp (= 3.20.2-1),
python3.12 (= 3.12.7-1),
python3.12-dev (= 3.12.7-1),
python3.12-minimal (= 3.12.7-1),
python3.13 (= 3.13.0-1),
python3.13-dev (= 3.13.0-1),
python3.13-minimal (= 3.13.0-1),
readline-common (= 8.2-5),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.11-1),
tar (= 1.35+dfsg-3),
tzdata (= 2024b-3),
util-linux (= 2.40.2-9),
xz-utils (= 5.6.2-2),
zlib1g (= 1:1.3.dfsg+really1.3.1-1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
DEB_BUILD_OPTIONS="parallel=8"
LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1729791763"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libslow5-0t64-dbgsym_0.7.0+dfsg-3+bd1_arm64.deb
-----------------------------------------------
new Debian package, version 2.0.
size 178056 bytes: control archive=568 bytes.
442 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libslow5-0t64-dbgsym
Source: libslow5lib (0.7.0+dfsg-3)
Version: 0.7.0+dfsg-3+bd1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 198
Depends: libslow5-0t64 (= 0.7.0+dfsg-3+bd1)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libslow5-0t64
Build-Ids: aaacc4d30f1085712ee1a995df541453c6519709
drwxr-xr-x root/root 0 2024-10-24 17:42 ./
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/debug/.build-id/aa/
-rw-r--r-- root/root 192480 2024-10-24 17:42 ./usr/lib/debug/.build-id/aa/acc4d30f1085712ee1a995df541453c6519709.debug
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-10-24 17:42 ./usr/share/doc/libslow5-0t64-dbgsym -> libslow5-0t64
libslow5-0t64_0.7.0+dfsg-3+bd1_arm64.deb
----------------------------------------
new Debian package, version 2.0.
size 54664 bytes: control archive=2244 bytes.
1585 bytes, 32 lines control
392 bytes, 5 lines md5sums
41 bytes, 1 lines shlibs
4849 bytes, 155 lines symbols
66 bytes, 2 lines triggers
Package: libslow5-0t64
Source: libslow5lib (0.7.0+dfsg-3)
Version: 0.7.0+dfsg-3+bd1
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 218
Depends: libc6 (>= 2.33), libzstd1 (>= 1.5.5)
Conflicts: libslow5-0 (<< 0.7.0+dfsg-3)
Replaces: libslow5-0
Provides: libslow5-0 (= 0.7.0+dfsg-3+bd1)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/hasindu2008/slow5lib
Description: library for reading & writing SLOW5 files
Slow5lib is a software library for reading & writing SLOW5 files.
Slow5lib is designed to facilitate use of data in SLOW5 format by third-
party software packages. Existing packages that read/write data in FAST5
format can be easily modified to support SLOW5.
.
SLOW5 is a new file format for storing signal data from Oxford Nanopore
Technologies (ONT) devices. SLOW5 was developed to overcome inherent
limitations in the standard FAST5 signal data format that prevent
efficient, scalable analysis and cause many headaches for developers.
SLOW5 can be encoded in human-readable ASCII format, or a more compact
and efficient binary format (BLOW5) - this is analogous to the seminal
SAM/BAM format for storing DNA sequence alignments. The BLOW5 binary
format supports *zlib* (DEFLATE) compression, or other compression
methods, thereby minimising the data storage footprint while still
permitting efficient parallel access. Detailed benchmarking experiments
have shown that SLOW5 format is an order of magnitude faster and
significantly smaller than FAST5.
drwxr-xr-x root/root 0 2024-10-24 17:42 ./
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/aarch64-linux-gnu/
-rw-r--r-- root/root 198656 2024-10-24 17:42 ./usr/lib/aarch64-linux-gnu/libslow5.so.0
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/doc/libslow5-0t64/
-rw-r--r-- root/root 225 2024-10-24 17:42 ./usr/share/doc/libslow5-0t64/changelog.Debian.arm64.gz
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-rw-r--r-- root/root 2089 2024-07-24 20:36 ./usr/share/doc/libslow5-0t64/copyright
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/lintian/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 60 2024-07-24 20:36 ./usr/share/lintian/overrides/libslow5-0t64
libslow5-dev_0.7.0+dfsg-3+bd1_arm64.deb
---------------------------------------
new Debian package, version 2.0.
size 79760 bytes: control archive=1520 bytes.
1576 bytes, 31 lines control
891 bytes, 13 lines md5sums
Package: libslow5-dev
Source: libslow5lib (0.7.0+dfsg-3)
Version: 0.7.0+dfsg-3+bd1
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 504
Depends: libslow5-0t64 (= 0.7.0+dfsg-3+bd1)
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/hasindu2008/slow5lib
Description: header and static library for reading & writing SLOW5 files
Slow5lib is a software library for reading & writing SLOW5 files.
Slow5lib is designed to facilitate use of data in SLOW5 format by third-
party software packages. Existing packages that read/write data in FAST5
format can be easily modified to support SLOW5.
.
SLOW5 is a new file format for storing signal data from Oxford Nanopore
Technologies (ONT) devices. SLOW5 was developed to overcome inherent
limitations in the standard FAST5 signal data format that prevent
efficient, scalable analysis and cause many headaches for developers.
SLOW5 can be encoded in human-readable ASCII format, or a more compact
and efficient binary format (BLOW5) - this is analogous to the seminal
SAM/BAM format for storing DNA sequence alignments. The BLOW5 binary
format supports *zlib* (DEFLATE) compression, or other compression
methods, thereby minimising the data storage footprint while still
permitting efficient parallel access. Detailed benchmarking experiments
have shown that SLOW5 format is an order of magnitude faster and
significantly smaller than FAST5.
.
This is the development package containing headers and static library.
drwxr-xr-x root/root 0 2024-10-24 17:42 ./
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/
drwxr-xr-x root/root 0 2022-10-07 23:23 ./usr/include/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/include/slow5/
drwxr-xr-x root/root 0 2022-10-07 23:23 ./usr/include/slow5/klib/
-rw-r--r-- root/root 21540 2022-10-07 23:23 ./usr/include/slow5/klib/khash.h
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-rw-r--r-- root/root 31763 2022-10-07 23:23 ./usr/include/slow5/slow5.h
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-rw-r--r-- root/root 4215 2022-10-07 23:23 ./usr/include/slow5/slow5_misc.h
-rw-r--r-- root/root 6604 2022-10-07 23:23 ./usr/include/slow5/slow5_press.h
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/aarch64-linux-gnu/
-rw-r--r-- root/root 401468 2024-10-24 17:42 ./usr/lib/aarch64-linux-gnu/libslow5.a
lrwxrwxrwx root/root 0 2024-10-24 17:42 ./usr/lib/aarch64-linux-gnu/libslow5.so -> libslow5.so.0
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/doc/libslow5-dev/
-rw-r--r-- root/root 225 2024-10-24 17:42 ./usr/share/doc/libslow5-dev/changelog.Debian.arm64.gz
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-rw-r--r-- root/root 2089 2024-07-24 20:36 ./usr/share/doc/libslow5-dev/copyright
python3-slow5-dbgsym_0.7.0+dfsg-3+bd1_arm64.deb
-----------------------------------------------
new Debian package, version 2.0.
size 2675820 bytes: control archive=656 bytes.
467 bytes, 12 lines control
303 bytes, 3 lines md5sums
Package: python3-slow5-dbgsym
Source: libslow5lib (0.7.0+dfsg-3)
Version: 0.7.0+dfsg-3+bd1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2750
Depends: python3-slow5 (= 0.7.0+dfsg-3+bd1)
Section: debug
Priority: optional
Description: debug symbols for python3-slow5
Build-Ids: 5331c3ec65be12781ca45fcc1b53c30883159596 61f10ac95d46ac55759a0cda4238570213a80e25
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drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/debug/.build-id/
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drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/debug/.build-id/61/
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drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/debug/.dwz/
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-rw-r--r-- root/root 27208 2024-10-24 17:42 ./usr/lib/debug/.dwz/aarch64-linux-gnu/python3-slow5.debug
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-10-24 17:42 ./usr/share/doc/python3-slow5-dbgsym -> python3-slow5
python3-slow5_0.7.0+dfsg-3+bd1_arm64.deb
----------------------------------------
new Debian package, version 2.0.
size 469912 bytes: control archive=1492 bytes.
1658 bytes, 30 lines control
891 bytes, 10 lines md5sums
Package: python3-slow5
Source: libslow5lib (0.7.0+dfsg-3)
Version: 0.7.0+dfsg-3+bd1
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 8139
Depends: libslow5-0t64 (= 0.7.0+dfsg-3+bd1), libc6 (>= 2.34), libstreamvbyte0 (>= 0.4.1), zlib1g (>= 1:1.1.4), python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3 (<< 3.14), python3 (>= 3.12~)
Section: python
Priority: optional
Homepage: https://github.com/hasindu2008/slow5lib
Description: Python3 modul for reading & writing SLOW5 files
Slow5lib is a software library for reading & writing SLOW5 files.
Slow5lib is designed to facilitate use of data in SLOW5 format by third-
party software packages. Existing packages that read/write data in FAST5
format can be easily modified to support SLOW5.
.
SLOW5 is a new file format for storing signal data from Oxford Nanopore
Technologies (ONT) devices. SLOW5 was developed to overcome inherent
limitations in the standard FAST5 signal data format that prevent
efficient, scalable analysis and cause many headaches for developers.
SLOW5 can be encoded in human-readable ASCII format, or a more compact
and efficient binary format (BLOW5) - this is analogous to the seminal
SAM/BAM format for storing DNA sequence alignments. The BLOW5 binary
format supports *zlib* (DEFLATE) compression, or other compression
methods, thereby minimising the data storage footprint while still
permitting efficient parallel access. Detailed benchmarking experiments
have shown that SLOW5 format is an order of magnitude faster and
significantly smaller than FAST5.
.
This is the Python3 module.
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drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/
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drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/lib/python3/
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-rw-r--r-- root/root 796280 2024-10-24 17:42 ./usr/lib/python3/dist-packages/pyslow5.cpython-313-aarch64-linux-gnu.so
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drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/doc/python3-slow5/
-rw-r--r-- root/root 225 2024-10-24 17:42 ./usr/share/doc/python3-slow5/changelog.Debian.arm64.gz
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-rw-r--r-- root/root 2089 2024-07-24 20:36 ./usr/share/doc/python3-slow5/copyright
drwxr-xr-x root/root 0 2024-10-24 17:42 ./usr/share/doc/python3-slow5/examples/
-rw-r--r-- root/root 19051 2022-10-07 23:23 ./usr/share/doc/python3-slow5/examples/example.py
-rw-r--r-- root/root 1194881 2022-10-07 23:23 ./usr/share/doc/python3-slow5/examples/example.slow5
-rw-r--r-- root/root 1838054 2022-10-07 23:23 ./usr/share/doc/python3-slow5/examples/example2.slow5
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-rw-r--r-- root/root 1835842 2024-10-24 17:42 ./usr/share/doc/python3-slow5/examples/example_write_aux.slow5
lintian
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Build Architecture: arm64
Build Type: any
Build-Space: 85312
Build-Time: 114
Distribution: sid
Host Architecture: arm64
Install-Time: 44
Job: /tmp/debusine-fetch-exec-upload-ud763gme/libslow5lib_0.7.0+dfsg-3.dsc
Lintian: pass
Machine Architecture: arm64
Package: libslow5lib
Package-Time: 198
Source-Version: 0.7.0+dfsg-3
Space: 85312
Status: successful
Version: 0.7.0+dfsg-3+bd1
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Finished at 2024-10-24T17:44:37Z
Build needed 00:03:18, 85312k disk space