Artifact python-pyani_0.2.12-3+bd1_arm64-2024-10-24T17:47:45Z

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bd_uninstallable: null
filename: python-pyani_0.2.12-3+bd1_arm64-2024-10-24T17:47:45Z.build
source: python-pyani
version: 0.2.12-3

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python-pyani_0.2.12-3+bd1_arm64-2024-10-24T17:47:45Z.build
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sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-06.freexian.com

+==============================================================================+
| python-pyani 0.2.12-3+bd1 (arm64)            Thu, 24 Oct 2024 17:47:45 +0000 |
+==============================================================================+

Package: python-pyani
Version: 0.2.12-3+bd1
Source Version: 0.2.12-3
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any

I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
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+------------------------------------------------------------------------------+
| Chroot Setup Commands                                                        |
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----------------------


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| Update chroot                                                                |
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+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

/tmp/debusine-fetch-exec-upload-empycl95/python-pyani_0.2.12-3.dsc exists in /tmp/debusine-fetch-exec-upload-empycl95; copying to chroot
I: NOTICE: Log filtering will replace 'build/python-pyani-j4am7O/python-pyani-0.2.12' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/python-pyani-j4am7O' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-pytest, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, python3-biopython, python3-matplotlib, python3-pandas, python3-scipy, python3-seaborn, mummer, ncbi-blast+, python3-pytest, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Reading package lists...
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Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14
  cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
  dh-python dh-strip-nondeterminism dumb-init dwz fakeroot fontconfig-config
  fonts-dejavu-core fonts-dejavu-mono fonts-lyx fonts-urw-base35 g++ g++-14
  g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gawk gcc gcc-14
  gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libblas3
  libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdebhelper-perl
  libdeflate0 libelf1t64 libexpat1 libexpat1-dev libfakeroot
  libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6
  libfribidi0 libgcc-14-dev libgfortran5 libgraphite2-3 libharfbuzz0b
  libhwasan0 libimagequant0 libisl23 libitm1 libjbig0 libjpeg62-turbo
  libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3
  liblbfgsb0 liblcms2-2 liblerc4 liblmdb0 liblsan0 libmbedcrypto7t64
  libmbedtls14t64 libmbedx509-1t64 libmpc3 libmpfr6 libncursesw6 libnsl2
  libopenjp2-7 libpixman-1-0 libpng16-16t64 libpython3-all-dev libpython3-dev
  libpython3-stdlib libpython3.12-dev libpython3.12-minimal
  libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
  libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0
  libsharpyuv0 libsigsegv2 libstdc++-14-dev libtcl8.6 libtiff6 libtirpc-common
  libtirpc3t64 libtk8.6 libtool libtsan2 libubsan1 libuv1t64 libwebp7
  libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxslt1.1
  libxss1 linux-libc-dev m4 media-types mummer ncbi-blast+ ncbi-data
  po-debconf python-matplotlib-data python3 python3-all python3-all-dev
  python3-appdirs python3-attr python3-autocommand python3-biopython
  python3-brotli python3-cairo python3-chardet python3-contourpy
  python3-cycler python3-dateutil python3-decorator python3-dev
  python3-fonttools python3-freetype python3-fs python3-inflect
  python3-iniconfig python3-jaraco.context python3-jaraco.functools
  python3-jaraco.text python3-kiwisolver python3-lxml python3-lz4
  python3-matplotlib python3-minimal python3-more-itertools python3-mpmath
  python3-numpy python3-packaging python3-pandas python3-pandas-lib
  python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy
  python3-pyparsing python3-pytest python3-reportlab python3-rlpycairo
  python3-scipy python3-seaborn python3-setuptools python3-six python3-sympy
  python3-tk python3-typeguard python3-typing-extensions python3-tz
  python3-ufolib2 python3-zipp python3.12 python3.12-dev python3.12-minimal
  python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk
  rpcsvc-proto sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common
  xfonts-encodings xfonts-utils xml-core zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc blt-demo cpp-doc gcc-14-locales
  cpp-14-doc dh-make flit python3-build python3-installer python3-wheel
  fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gcc-14-doc gawk-doc
  gcc-multilib manpages-dev flex bison gdb gcc-doc gdb-aarch64-linux-gnu
  libc-devtools glibc-doc libjs-jquery-ui-docs liblcms2-utils libstdc++-14-doc
  tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
  libmail-box-perl python3-doc python3-venv python-attr-doc bwa clustalo
  clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank
  probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml
  samtools t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal
  dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3
  librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi
  python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado
  texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2
  gfortran python-numpy-doc python-pandas-doc python3-statsmodels
  python-pil-doc python-pyparsing-doc pdf-viewer python3-egenix-mxtexttools
  python-reportlab-doc rl-accel rl-renderpm python-scipy-doc
  python-setuptools-doc texlive-fonts-extra python-sympy-doc tix
  python3-tk-dbg python3.12-venv python3.12-doc binfmt-support python3.13-venv
  python3.13-doc sgml-base-doc
Recommended packages:
  manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
  libltdl-dev libmail-sendmail-perl python-biopython-doc python3-bs4
  python3-cssselect python3-html5lib python3-bottleneck python3-numexpr
  python3-odf python3-openpyxl python3-tables python3-jinja2 python3-olefile
  python3-pygments fonts-dejavu-extra isympy-common
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14
  cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
  dh-python dh-strip-nondeterminism dumb-init dwz fakeroot fontconfig-config
  fonts-dejavu-core fonts-dejavu-mono fonts-lyx fonts-urw-base35 g++ g++-14
  g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gawk gcc gcc-14
  gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libblas3
  libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdebhelper-perl
  libdeflate0 libelf1t64 libexpat1 libexpat1-dev libfakeroot
  libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6
  libfribidi0 libgcc-14-dev libgfortran5 libgraphite2-3 libharfbuzz0b
  libhwasan0 libimagequant0 libisl23 libitm1 libjbig0 libjpeg62-turbo
  libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3
  liblbfgsb0 liblcms2-2 liblerc4 liblmdb0 liblsan0 libmbedcrypto7t64
  libmbedtls14t64 libmbedx509-1t64 libmpc3 libmpfr6 libncursesw6 libnsl2
  libopenjp2-7 libpixman-1-0 libpng16-16t64 libpython3-all-dev libpython3-dev
  libpython3-stdlib libpython3.12-dev libpython3.12-minimal
  libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
  libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0
  libsharpyuv0 libsigsegv2 libstdc++-14-dev libtcl8.6 libtiff6 libtirpc-common
  libtirpc3t64 libtk8.6 libtool libtsan2 libubsan1 libuv1t64 libwebp7
  libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxrender1 libxslt1.1
  libxss1 linux-libc-dev m4 media-types mummer ncbi-blast+ ncbi-data
  po-debconf python-matplotlib-data python3 python3-all python3-all-dev
  python3-appdirs python3-attr python3-autocommand python3-biopython
  python3-brotli python3-cairo python3-chardet python3-contourpy
  python3-cycler python3-dateutil python3-decorator python3-dev
  python3-fonttools python3-freetype python3-fs python3-inflect
  python3-iniconfig python3-jaraco.context python3-jaraco.functools
  python3-jaraco.text python3-kiwisolver python3-lxml python3-lz4
  python3-matplotlib python3-minimal python3-more-itertools python3-mpmath
  python3-numpy python3-packaging python3-pandas python3-pandas-lib
  python3-pil python3-pil.imagetk python3-pkg-resources python3-pluggy
  python3-pyparsing python3-pytest python3-reportlab python3-rlpycairo
  python3-scipy python3-seaborn python3-setuptools python3-six python3-sympy
  python3-tk python3-typeguard python3-typing-extensions python3-tz
  python3-ufolib2 python3-zipp python3.12 python3.12-dev python3.12-minimal
  python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk
  rpcsvc-proto sbuild-build-depends-main-dummy sgml-base tk8.6-blt2.5
  unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core
  zlib1g-dev
0 upgraded, 199 newly installed, 0 to remove and 0 not upgraded.
Need to get 160 MB/194 MB of archives.
After this operation, 869 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [980 B]
Get:2 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ python3-minimal 3.12.6-1+debusine1 [26.8 kB]
Get:3 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ libpython3-stdlib 3.12.6-1+debusine1 [9732 B]
Get:4 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ python3 3.12.6-1+debusine1 [27.8 kB]
Get:5 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ libpython3-dev 3.12.6-1+debusine1 [9992 B]
Get:6 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ libpython3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:7 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB]
Get:8 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ python-matplotlib-data 3.8.3-3+bootstrap1 [2731 kB]
Get:9 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ python3-all 3.12.6-1+debusine1 [1056 B]
Get:10 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ python3-dev 3.12.6-1+debusine1 [26.1 kB]
Get:11 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ python3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:12 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ python3-biopython 1.84+dfsg-3+bd1 [1643 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 libsigsegv2 arm64 2.14-1+b1 [34.3 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 gawk arm64 1:5.2.1-2+b1 [642 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2 [124 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-1 [671 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libpython3.13-minimal arm64 3.13.0-1 [849 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 python3.13-minimal arm64 3.13.0-1 [1835 kB]
Get:27 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ python3-scipy 1.13.1-5+nocheck1 [18.1 MB]
Get:28 http://deb.debian.org/debian sid/main arm64 sgml-base all 1.31 [15.4 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:33 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ python3-matplotlib 3.8.3-3+bootstrap1 [5583 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get:38 file:/<<BUILDDIR>>/resolver-mJ0woc/apt_archive ./ python3-pandas-lib 2.2.3+dfsg-4+bd1 [6028 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 libfontenc1 arm64 1:1.1.8-1 [22.2 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 x11-common all 1:7.7+23.1 [216 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB]
Get:46 http://deb.debian.org/debian sid/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 libfontconfig1 arm64 2.15.0-1.1 [385 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 libxcb1 arm64 1.17.0-2 [143 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 libx11-data all 2:1.8.7-1 [328 kB]
Get:52 http://deb.debian.org/debian sid/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB]
Get:53 http://deb.debian.org/debian sid/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB]
Get:55 http://deb.debian.org/debian sid/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB]
Get:56 http://deb.debian.org/debian sid/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB]
Get:57 http://deb.debian.org/debian sid/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB]
Get:58 http://deb.debian.org/debian sid/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7 [533 kB]
Get:59 http://deb.debian.org/debian sid/main arm64 blt arm64 2.5.3+dfsg-7 [6024 B]
Get:60 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.4-1 [2440 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:63 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1 [59.7 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7 [9164 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-7 [1280 B]
Get:69 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:70 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:71 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-7 [42.2 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-7 [24.2 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-7 [2578 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-7 [1162 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-7 [2386 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-7 [1040 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-7 [1442 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-7 [2365 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB]
Get:80 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:82 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:83 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB]
Get:85 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:87 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:88 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:89 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:94 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:104 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 75.2.0-1 [731 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 libxcb-render0 arm64 1.17.0-2 [115 kB]
Get:117 http://deb.debian.org/debian sid/main arm64 libxcb-shm0 arm64 1.17.0-2 [105 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 libcairo2 arm64 1.18.2-2 [483 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB]
Get:122 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-7 [361 kB]
Get:123 http://deb.debian.org/debian sid/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB]
Get:125 http://deb.debian.org/debian sid/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB]
Get:126 http://deb.debian.org/debian sid/main arm64 libjbig0 arm64 2.1-6.1+b1 [30.4 kB]
Get:127 http://deb.debian.org/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB]
Get:128 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:129 http://deb.debian.org/debian sid/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:130 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:131 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:132 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB]
Get:133 http://deb.debian.org/debian sid/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB]
Get:134 http://deb.debian.org/debian sid/main arm64 liblcms2-2 arm64 2.16-2 [151 kB]
Get:135 http://deb.debian.org/debian sid/main arm64 liblerc4 arm64 4.0.0+ds-4+b1 [142 kB]
Get:136 http://deb.debian.org/debian sid/main arm64 liblmdb0 arm64 0.9.31-1+b1 [43.0 kB]
Get:137 http://deb.debian.org/debian sid/main arm64 libmbedcrypto7t64 arm64 2.28.8-1 [269 kB]
Get:138 http://deb.debian.org/debian sid/main arm64 libmbedx509-1t64 arm64 2.28.8-1 [131 kB]
Get:139 http://deb.debian.org/debian sid/main arm64 libmbedtls14t64 arm64 2.28.8-1 [160 kB]
Get:140 http://deb.debian.org/debian sid/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB]
Get:141 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:142 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:143 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:144 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:145 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:146 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:147 http://deb.debian.org/debian sid/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB]
Get:148 http://deb.debian.org/debian sid/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB]
Get:149 http://deb.debian.org/debian sid/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB]
Get:150 http://deb.debian.org/debian sid/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB]
Get:151 http://deb.debian.org/debian sid/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get:152 http://deb.debian.org/debian sid/main arm64 libuv1t64 arm64 1.48.0-6 [142 kB]
Get:153 http://deb.debian.org/debian sid/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [110 kB]
Get:154 http://deb.debian.org/debian sid/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB]
Get:155 http://deb.debian.org/debian sid/main arm64 libxslt1.1 arm64 1.1.35-1.1 [221 kB]
Get:156 http://deb.debian.org/debian sid/main arm64 mummer arm64 3.23+dfsg-8 [636 kB]
Get:157 http://deb.debian.org/debian sid/main arm64 ncbi-data all 6.1.20170106+dfsg2-4 [3540 kB]
Get:158 http://deb.debian.org/debian sid/main arm64 ncbi-blast+ arm64 2.16.0+ds-6 [13.8 MB]
Get:159 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:160 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:161 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
Get:162 http://deb.debian.org/debian sid/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB]
Get:163 http://deb.debian.org/debian sid/main arm64 python3-attr all 24.2.0-1 [68.4 kB]
Get:164 http://deb.debian.org/debian sid/main arm64 python3-numpy arm64 1:1.26.4+ds-11 [3351 kB]
Get:165 http://deb.debian.org/debian sid/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB]
Get:166 http://deb.debian.org/debian sid/main arm64 python3.12-tk arm64 3.12.7-1 [110 kB]
Get:167 http://deb.debian.org/debian sid/main arm64 python3.13-tk arm64 3.13.0-1 [101 kB]
Get:168 http://deb.debian.org/debian sid/main arm64 python3-tk arm64 3.12.6-1 [9428 B]
Get:169 http://deb.debian.org/debian sid/main arm64 python3-pil.imagetk arm64 10.4.0-1 [79.4 kB]
Get:170 http://deb.debian.org/debian sid/main arm64 python3-pil arm64 10.4.0-1 [480 kB]
Get:171 http://deb.debian.org/debian sid/main arm64 python3-cairo arm64 1.26.1-2 [113 kB]
Get:172 http://deb.debian.org/debian sid/main arm64 python3-freetype all 2.5.1-1 [89.3 kB]
Get:173 http://deb.debian.org/debian sid/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B]
Get:174 http://deb.debian.org/debian sid/main arm64 python3-reportlab all 4.2.5-1 [1117 kB]
Get:175 http://deb.debian.org/debian sid/main arm64 xml-core all 0.19 [20.1 kB]
Get:176 http://deb.debian.org/debian sid/main arm64 w3c-sgml-lib all 1.3-3 [273 kB]
Get:177 http://deb.debian.org/debian sid/main arm64 python3-brotli arm64 1.1.0-2+b4 [301 kB]
Get:178 http://deb.debian.org/debian sid/main arm64 python3-contourpy arm64 1.3.0-2 [191 kB]
Get:179 http://deb.debian.org/debian sid/main arm64 python3-cycler all 0.12.1-1 [9496 B]
Get:180 http://deb.debian.org/debian sid/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB]
Get:181 http://deb.debian.org/debian sid/main arm64 python3-decorator all 5.1.1-5 [15.1 kB]
Get:182 http://deb.debian.org/debian sid/main arm64 python3-tz all 2024.1-2 [30.9 kB]
Get:183 http://deb.debian.org/debian sid/main arm64 python3-six all 1.16.0-7 [16.4 kB]
Get:184 http://deb.debian.org/debian sid/main arm64 python3-fs all 2.4.16-4 [95.4 kB]
Get:185 http://deb.debian.org/debian sid/main arm64 python3-lxml arm64 5.3.0-1 [1096 kB]
Get:186 http://deb.debian.org/debian sid/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b4 [25.1 kB]
Get:187 http://deb.debian.org/debian sid/main arm64 python3-mpmath all 1.3.0-1 [419 kB]
Get:188 http://deb.debian.org/debian sid/main arm64 python3-sympy all 1.13.3-1 [4147 kB]
Get:189 http://deb.debian.org/debian sid/main arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB]
Get:190 http://deb.debian.org/debian sid/main arm64 unicode-data all 15.1.0-1 [8547 kB]
Get:191 http://deb.debian.org/debian sid/main arm64 python3-fonttools arm64 4.54.1-4 [1356 kB]
Get:192 http://deb.debian.org/debian sid/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get:193 http://deb.debian.org/debian sid/main arm64 python3-kiwisolver arm64 1.4.7-2 [56.7 kB]
Get:194 http://deb.debian.org/debian sid/main arm64 python3-pyparsing all 3.1.2-1 [146 kB]
Get:195 http://deb.debian.org/debian sid/main arm64 python3-packaging all 24.1-1 [45.8 kB]
Get:196 http://deb.debian.org/debian sid/main arm64 python3-pandas all 2.2.3+dfsg-4 [3096 kB]
Get:197 http://deb.debian.org/debian sid/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get:198 http://deb.debian.org/debian sid/main arm64 python3-pytest all 8.3.3-1 [249 kB]
Get:199 http://deb.debian.org/debian sid/main arm64 python3-seaborn all 0.13.2-4 [215 kB]
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up liblapack3:arm64 (3.12.0-3) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
Setting up libmbedx509-1t64:arm64 (2.28.8-1) ...
Setting up libxrender1:arm64 (1:0.9.10-1.1+b1) ...
Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ...
Setting up python3.13 (3.13.0-1) ...
Setting up fontconfig-config (2.15.0-1.1) ...
Setting up libwebpdemux2:arm64 (1.4.0-0.1) ...
Setting up libxext6:arm64 (2:1.3.4-1+b2) ...
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ...
Setting up libjs-sphinxdoc (7.4.7-3) ...
Setting up cpp-14-aarch64-linux-gnu (14.2.0-7) ...
Setting up libmbedtls14t64:arm64 (2.28.8-1) ...
Setting up xml-core (0.19) ...
Setting up libnsl2:arm64 (1.3.0-3+b2) ...
Setting up libc6-dev:arm64 (2.40-3) ...
Setting up libharfbuzz0b:arm64 (10.0.1-1) ...
Setting up libxss1:arm64 (1:1.2.3-1+b1) ...
Setting up libfontconfig1:arm64 (2.15.0-1.1) ...
Setting up libgcc-14-dev:arm64 (14.2.0-7) ...
Setting up libstdc++-14-dev:arm64 (14.2.0-7) ...
Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b1) ...
Setting up libxft2:arm64 (2.3.6-1+b1) ...
Setting up libpython3.12-stdlib:arm64 (3.12.7-1) ...
Setting up libtk8.6:arm64 (8.6.15-1) ...
Setting up python3.12 (3.12.7-1) ...
Setting up python3.12-tk (3.12.7-1) ...
Setting up xfonts-utils (1:7.7+7) ...
Setting up libcairo2:arm64 (1.18.2-2) ...
Setting up python3.13-tk (3.13.0-1) ...
Setting up libpython3.12t64:arm64 (3.12.7-1) ...
Setting up cpp-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up libexpat1-dev:arm64 (2.6.3-1) ...
Setting up libraqm0:arm64 (0.10.1-1+b1) ...
Setting up cpp-14 (14.2.0-7) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ...
Setting up cpp (4:14.2.0-1) ...
Setting up gcc-14-aarch64-linux-gnu (14.2.0-7) ...
Setting up libpython3-stdlib:arm64 (3.12.6-1+debusine1) ...
Setting up gcc-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ...
Setting up g++-14-aarch64-linux-gnu (14.2.0-7) ...
Setting up blt (2.5.3+dfsg-7) ...
Setting up python3 (3.12.6-1+debusine1) ...
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Setting up python3-autocommand (2.2.2-3) ...
Setting up python3-tz (2024.1-2) ...
Setting up gcc-14 (14.2.0-7) ...
Setting up ncbi-blast+ (2.16.0+ds-6) ...
Setting up python3-six (1.16.0-7) ...
Setting up python3-pil:arm64 (10.4.0-1) ...
Setting up python3-decorator (5.1.1-5) ...
Setting up python3-packaging (24.1-1) ...
Setting up python3-pyparsing (3.1.2-1) ...
Setting up python3-brotli (1.1.0-2+b4) ...
Setting up libpython3.13-dev:arm64 (3.13.0-1) ...
Setting up python3-cycler (0.12.1-1) ...
Setting up python3-kiwisolver (1.4.7-2) ...
Setting up python3.12-dev (3.12.7-1) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-pluggy (1.5.0-1) ...
Setting up python3-lxml:arm64 (5.3.0-1) ...
Setting up g++-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up python3-dateutil (2.9.0-3) ...
Setting up g++-14 (14.2.0-7) ...
Setting up python3-mpmath (1.3.0-1) ...
Setting up python3-appdirs (1.4.4-4) ...
Setting up python3-more-itertools (10.5.0-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-sympy (1.13.3-1) ...
Setting up python3-attr (24.2.0-1) ...
Setting up libpython3-dev:arm64 (3.12.6-1+debusine1) ...
Setting up python3-cairo (1.26.1-2) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up libtool (2.4.7-7) ...
Setting up python3-lz4 (4.0.2+dfsg-1+b4) ...
Setting up python3.13-dev (3.13.0-1) ...
Setting up python3-pytest (8.3.3-1) ...
Setting up python3-typeguard (4.3.0-1) ...
Setting up python3-all (3.12.6-1+debusine1) ...
Setting up python3-tk:arm64 (3.12.6-1) ...
Setting up gcc (4:14.2.0-1) ...
Setting up dh-autoreconf (20) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-pil.imagetk:arm64 (10.4.0-1) ...
Setting up python3-rlpycairo (0.3.0-3) ...
Setting up libpython3-all-dev:arm64 (3.12.6-1+debusine1) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-dev (3.12.6-1+debusine1) ...
Setting up g++ (4:14.2.0-1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up build-essential (12.12) ...
Setting up python3-pkg-resources (75.2.0-1) ...
Setting up python3-all-dev (3.12.6-1+debusine1) ...
Setting up python3-setuptools (75.2.0-1) ...
Setting up debhelper (13.20) ...
Setting up python3-fs (2.4.16-4) ...
Setting up python3-chardet (5.2.0+dfsg-1) ...
Setting up python3-numpy (1:1.26.4+ds-11) ...
Setting up python3-reportlab (4.2.5-1) ...
Setting up python3-contourpy (1.3.0-2) ...
Setting up dh-python (6.20240824) ...
Setting up python3-scipy (1.13.1-5+nocheck1) ...
Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-4+bd1) ...
Setting up python3-pandas (2.2.3+dfsg-4) ...
Setting up python3-fonttools (4.54.1-4) ...
Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
Setting up python3-matplotlib (3.8.3-3+bootstrap1) ...
Setting up python3-seaborn (0.13.2-4) ...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for libc-bin (2.40-3) ...
Processing triggers for sgml-base (1.31) ...
Setting up w3c-sgml-lib (1.3-3) ...
Setting up python3-biopython (1.84+dfsg-3+bd1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.4-1
Package versions: appstream_1.0.3-1 apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 blt_2.5.3+dfsg-7 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 fontconfig-config_2.15.0-1.1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lyx_2.4.2.1-1 fonts-urw-base35_20200910-8 g++_4:14.2.0-1 g++-14_14.2.0-7 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libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsereal-decoder-perl_5.004+ds-1+b3 libsereal-encoder-perl_5.004+ds-1+b3 libsframe1_2.43.1-5 libsharpyuv0_1.4.0-0.1 libsigsegv2_2.14-1+b1 libsmartcols1_2.40.2-9 libsort-versions-perl_1.62-3 libsqlite3-0_3.46.1-1 libss2_1.47.1-1 libssh2-1t64_1.11.1-1 libssl3t64_3.3.2-1 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 libstemmer0d_2.2.0-4+b1 libstrictures-perl_2.000006-1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3+b3 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1+b3 libsub-quote-perl_2.006008-1 libsyntax-keyword-try-perl_0.30-1+b1 libsystemd0_256.7-2 libtasn1-6_4.19.0-3+b2 libtcl8.6_8.6.15+dfsg-2 libterm-readkey-perl_2.38-2+b4 libtext-glob-perl_0.11-3 libtext-levenshteinxs-perl_0.03-5+b4 libtext-markdown-discount-perl_0.16-1+b3 libtext-xslate-perl_3.5.9-2+b1 libtiff6_4.5.1+git230720-5 libtime-duration-perl_1.21-2 libtime-moment-perl_0.44-2+b4 libtimedate-perl_2.3300-2 libtinfo6_6.5-2 libtirpc-common_1.3.4+ds-1.3 libtirpc3t64_1.3.4+ds-1.3 libtk8.6_8.6.15-1 libtool_2.4.7-7 libtry-tiny-perl_0.32-1 libtsan2_14.2.0-7 libubsan1_14.2.0-7 libuchardet0_0.0.8-1+b1 libudev1_256.7-2 libunicode-utf8-perl_0.62-2+b3 libunistring5_1.2-1 liburi-perl_5.30-1 libuuid1_2.40.2-9 libuv1t64_1.48.0-6 libvariable-magic-perl_0.64-1+b1 libwebp7_1.4.0-0.1 libwebpdemux2_1.4.0-0.1 libwebpmux3_1.4.0-0.1 libwww-mechanize-perl_2.19-1 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libx11-6_2:1.8.7-1+b1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1+b1 libxcb-render0_1.17.0-2 libxcb-shm0_1.17.0-2 libxcb1_1.17.0-2 libxdmcp6_1:1.1.2-3+b1 libxext6_2:1.3.4-1+b2 libxft2_2.3.6-1+b1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-5+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml2_2.12.7+dfsg+really2.9.14-0.1 libxmlb2_0.3.21-1 libxrender1_1:0.9.10-1.1+b1 libxs-parse-keyword-perl_0.46-1+b1 libxslt1.1_1.1.35-1.1 libxss1_1:1.2.3-1+b1 libxxhash0_0.8.2-2+b1 libyaml-0-2_0.2.5-1+b1 libyaml-libyaml-perl_0.902.0+ds-2+b1 libzstd1_1.5.6+dfsg-1 lintian_2.119.0 linux-libc-dev_6.11.4-1 login_1:4.16.0-2+really2.40.2-9 login.defs_1:4.16.0-4 logsave_1.47.1-1 lzop_1.04-2 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 media-types_10.1.0 mount_2.40.2-9 mummer_3.23+dfsg-8 ncbi-blast+_2.16.0+ds-6 ncbi-data_6.1.20170106+dfsg2-4 ncurses-base_6.5-2 ncurses-bin_6.5-2 netbase_6.4 openssl_3.3.2-1 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 patchutils_0.4.2-1 perl_5.40.0-6 perl-base_5.40.0-6 perl-modules-5.40_5.40.0-6 perl-openssl-defaults_7+b2 plzip_1.11-2 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.8.3-3+bootstrap1 python3_3.12.6-1+debusine1 python3-all_3.12.6-1+debusine1 python3-all-dev_3.12.6-1+debusine1 python3-appdirs_1.4.4-4 python3-attr_24.2.0-1 python3-autocommand_2.2.2-3 python3-biopython_1.84+dfsg-3+bd1 python3-brotli_1.1.0-2+b4 python3-cairo_1.26.1-2 python3-chardet_5.2.0+dfsg-1 python3-contourpy_1.3.0-2 python3-cycler_0.12.1-1 python3-dateutil_2.9.0-3 python3-decorator_5.1.1-5 python3-dev_3.12.6-1+debusine1 python3-fonttools_4.54.1-4 python3-freetype_2.5.1-1 python3-fs_2.4.16-4 python3-inflect_7.3.1-2 python3-iniconfig_1.1.1-2 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-kiwisolver_1.4.7-2 python3-lxml_5.3.0-1 python3-lz4_4.0.2+dfsg-1+b4 python3-matplotlib_3.8.3-3+bootstrap1 python3-minimal_3.12.6-1+debusine1 python3-more-itertools_10.5.0-1 python3-mpmath_1.3.0-1 python3-numpy_1:1.26.4+ds-11 python3-packaging_24.1-1 python3-pandas_2.2.3+dfsg-4 python3-pandas-lib_2.2.3+dfsg-4+bd1 python3-pil_10.4.0-1 python3-pil.imagetk_10.4.0-1 python3-pkg-resources_75.2.0-1 python3-pluggy_1.5.0-1 python3-pyparsing_3.1.2-1 python3-pytest_8.3.3-1 python3-reportlab_4.2.5-1 python3-rlpycairo_0.3.0-3 python3-scipy_1.13.1-5+nocheck1 python3-seaborn_0.13.2-4 python3-setuptools_75.2.0-1 python3-six_1.16.0-7 python3-sympy_1.13.3-1 python3-tk_3.12.6-1 python3-typeguard_4.3.0-1 python3-typing-extensions_4.12.2-2 python3-tz_2024.1-2 python3-ufolib2_0.16.0+dfsg1-1 python3-zipp_3.20.2-1 python3.12_3.12.7-1 python3.12-dev_3.12.7-1 python3.12-minimal_3.12.7-1 python3.12-tk_3.12.7-1 python3.13_3.13.0-1 python3.13-dev_3.13.0-1 python3.13-minimal_3.13.0-1 python3.13-tk_3.13.0-1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sgml-base_1.31 shared-mime-info_2.4-5+b1 sysvinit-utils_3.11-1 t1utils_1.41-4 tar_1.35+dfsg-3 tk8.6-blt2.5_2.5.3+dfsg-7 tzdata_2024b-3 ucf_3.0043+nmu1 unicode-data_15.1.0-1 unzip_6.0-28 util-linux_2.40.2-9 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23.1 xfonts-encodings_1:1.0.4-2.2 xfonts-utils_1:7.7+7 xml-core_0.19 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

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Hash: SHA512

Format: 3.0 (quilt)
Source: python-pyani
Binary: python3-pyani
Architecture: any
Version: 0.2.12-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://github.com/widdowquinn/pyani
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/python-pyani
Vcs-Git: https://salsa.debian.org/med-team/python-pyani.git
Testsuite: autopkgtest, autopkgtest-pkg-python
Testsuite-Triggers: python3-all, python3-pytest
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, python3-biopython <!nocheck>, python3-matplotlib <!nocheck>, python3-pandas <!nocheck>, python3-scipy <!nocheck>, python3-seaborn <!nocheck>, mummer <!nocheck>, ncbi-blast+ <!nocheck>, python3-pytest <!nocheck>
Package-List:
 python3-pyani deb python optional arch=any
Checksums-Sha1:
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Checksums-Sha256:
 31bac50843d3af54cf273a4388f4f87bffb0688082e4e3179ea1640aa208626d 49038533 python-pyani_0.2.12.orig.tar.gz
 811e72aaf7f67bc5f2c6d5538f527ad610ffab339278526ff33cae6826100ea6 11404 python-pyani_0.2.12-3.debian.tar.xz
Files:
 be120c6027f0fb7e14bbefeff7cb9abb 49038533 python-pyani_0.2.12.orig.tar.gz
 d629542deb83329b306d5d71bdcf7805 11404 python-pyani_0.2.12-3.debian.tar.xz

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gpgv: Signature made Fri Nov 24 20:24:53 2023 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./python-pyani_0.2.12-3.dsc: no acceptable signature found
dpkg-source: info: extracting python-pyani in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking python-pyani_0.2.12.orig.tar.gz
dpkg-source: info: unpacking python-pyani_0.2.12-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying pytest.patch
dpkg-source: info: applying dataframe_sort.patch

Check disk space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 0.2.12-3+bd1

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package python-pyani
dpkg-buildpackage: info: source version 0.2.12-3+bd1
dpkg-buildpackage: info: source distribution sid
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:311: python3.13 setup.py clean 
/usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        By 2025-Mar-03, you need to update your project and remove deprecated calls
        or your builds will no longer be supported.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
I: pybuild base:311: python3.12 setup.py clean 
/usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        By 2025-Mar-03, you need to update your project and remove deprecated calls
        or your builds will no longer be supported.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
rm -f pyani.egg-info/PKG-INFO pyani.egg-info/SOURCES.txt pyani.egg-info/dependency_links.txt pyani.egg-info/requires.txt pyani.egg-info/top_level.txt
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config 
/usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        By 2025-Mar-03, you need to update your project and remove deprecated calls
        or your builds will no longer be supported.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running config
I: pybuild base:311: python3.12 setup.py config 
/usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        By 2025-Mar-03, you need to update your project and remove deprecated calls
        or your builds will no longer be supported.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running config
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.13 setup.py build 
/usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        By 2025-Mar-03, you need to update your project and remove deprecated calls
        or your builds will no longer be supported.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/pyani
copying pyani/anib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/pyani
copying pyani/tetra.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/pyani
copying pyani/pyani_graphics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/pyani
copying pyani/pyani_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/pyani
copying pyani/pyani_jobs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/pyani
copying pyani/anim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/pyani
copying pyani/run_sge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/pyani
copying pyani/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/pyani
copying pyani/pyani_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/pyani
copying pyani/pyani_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/pyani
copying pyani/run_multiprocessing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/pyani
running egg_info
creating pyani.egg-info
writing pyani.egg-info/PKG-INFO
writing dependency_links to pyani.egg-info/dependency_links.txt
writing requirements to pyani.egg-info/requires.txt
writing top-level names to pyani.egg-info/top_level.txt
writing manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'pyani.egg-info/SOURCES.txt'
running build_scripts
creating build/scripts-3.13
copying and adjusting bin/average_nucleotide_identity.py -> build/scripts-3.13
copying and adjusting bin/genbank_get_genomes_by_taxon.py -> build/scripts-3.13
copying and adjusting bin/delta_filter_wrapper.py -> build/scripts-3.13
changing mode of build/scripts-3.13/average_nucleotide_identity.py from 644 to 755
changing mode of build/scripts-3.13/genbank_get_genomes_by_taxon.py from 644 to 755
changing mode of build/scripts-3.13/delta_filter_wrapper.py from 644 to 755
I: pybuild base:311: /usr/bin/python3 setup.py build 
/usr/lib/python3/dist-packages/setuptools/dist.py:491: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!

        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.

        By 2025-Mar-03, you need to update your project and remove deprecated calls
        or your builds will no longer be supported.

        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************

!!
  opt = self.warn_dash_deprecation(opt, section)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani
copying pyani/anib.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani
copying pyani/tetra.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani
copying pyani/pyani_graphics.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani
copying pyani/pyani_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani
copying pyani/pyani_jobs.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani
copying pyani/anim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani
copying pyani/run_sge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani
copying pyani/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani
copying pyani/pyani_config.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani
copying pyani/pyani_files.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani
copying pyani/run_multiprocessing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani
running egg_info
writing pyani.egg-info/PKG-INFO
writing dependency_links to pyani.egg-info/dependency_links.txt
writing requirements to pyani.egg-info/requires.txt
writing top-level names to pyani.egg-info/top_level.txt
reading manifest file 'pyani.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'pyani.egg-info/SOURCES.txt'
running build_scripts
creating build/scripts-3.12
copying and adjusting bin/average_nucleotide_identity.py -> build/scripts-3.12
copying and adjusting bin/genbank_get_genomes_by_taxon.py -> build/scripts-3.12
copying and adjusting bin/delta_filter_wrapper.py -> build/scripts-3.12
changing mode of build/scripts-3.12/average_nucleotide_identity.py from 644 to 755
changing mode of build/scripts-3.12/genbank_get_genomes_by_taxon.py from 644 to 755
changing mode of build/scripts-3.12/delta_filter_wrapper.py from 644 to 755
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build; python3.13 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>
plugins: typeguard-4.3.0
collected 8 items / 8 errors

==================================== ERRORS ====================================
____ ERROR collecting .pybuild/cpython3_3.13_pyani/build/tests/test_anib.py ____
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/tests/test_anib.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_anib.py:56: in <module>
    import pandas as pd
/usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
    raise ImportError(
E   ImportError: Unable to import required dependencies:
E   numpy: Error importing numpy: you should not try to import numpy from
E           its source directory; please exit the numpy source tree, and relaunch
E           your python interpreter from there.
____ ERROR collecting .pybuild/cpython3_3.13_pyani/build/tests/test_anim.py ____
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/tests/test_anim.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_anim.py:57: in <module>
    import pandas as pd
/usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
    raise ImportError(
E   ImportError: Unable to import required dependencies:
E   numpy: Error importing numpy: you should not try to import numpy from
E           its source directory; please exit the numpy source tree, and relaunch
E           your python interpreter from there.
_ ERROR collecting .pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/tests/test_concordance.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_concordance.py:60: in <module>
    import pandas as pd
/usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
    raise ImportError(
E   ImportError: Unable to import required dependencies:
E   numpy: Error importing numpy: you should not try to import numpy from
E           its source directory; please exit the numpy source tree, and relaunch
E           your python interpreter from there.
__ ERROR collecting .pybuild/cpython3_3.13_pyani/build/tests/test_graphics.py __
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/tests/test_graphics.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_graphics.py:10: in <module>
    import pandas as pd
/usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
    raise ImportError(
E   ImportError: Unable to import required dependencies:
E   numpy: Error importing numpy: you should not try to import numpy from
E           its source directory; please exit the numpy source tree, and relaunch
E           your python interpreter from there.
____ ERROR collecting .pybuild/cpython3_3.13_pyani/build/tests/test_jobs.py ____
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/tests/test_jobs.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
    from . import multiarray
/usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
    from . import overrides
/usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
    from numpy.core._multiarray_umath import (
E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'

During handling of the above exception, another exception occurred:
/usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
    from numpy.__config__ import show as show_config
/usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
    from numpy.core._multiarray_umath import (
/usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
    raise ImportError(msg)
E   ImportError: 
E   
E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
E   
E   Importing the numpy C-extensions failed. This error can happen for
E   many reasons, often due to issues with your setup or how NumPy was
E   installed.
E   
E   We have compiled some common reasons and troubleshooting tips at:
E   
E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
E   
E   Please note and check the following:
E   
E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
E     * The NumPy version is: "1.26.4"
E   
E   and make sure that they are the versions you expect.
E   Please carefully study the documentation linked above for further help.
E   
E   Original error was: No module named 'numpy.core._multiarray_umath'

The above exception was the direct cause of the following exception:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_jobs.py:58: in <module>
    from pyani import (pyani_jobs, )
pyani/pyani_jobs.py:35: in <module>
    from .pyani_config import SGE_WAIT
pyani/pyani_config.py:11: in <module>
    from matplotlib.colors import LinearSegmentedColormap
/usr/lib/python3/dist-packages/matplotlib/__init__.py:156: in <module>
    import numpy
/usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
    raise ImportError(msg) from e
E   ImportError: Error importing numpy: you should not try to import numpy from
E           its source directory; please exit the numpy source tree, and relaunch
E           your python interpreter from there.
_ ERROR collecting .pybuild/cpython3_3.13_pyani/build/tests/test_multiprocessing.py _
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/tests/test_multiprocessing.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
    from . import multiarray
/usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
    from . import overrides
/usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
    from numpy.core._multiarray_umath import (
E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'

During handling of the above exception, another exception occurred:
/usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
    from numpy.__config__ import show as show_config
/usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
    from numpy.core._multiarray_umath import (
/usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
    raise ImportError(msg)
E   ImportError: 
E   
E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
E   
E   Importing the numpy C-extensions failed. This error can happen for
E   many reasons, often due to issues with your setup or how NumPy was
E   installed.
E   
E   We have compiled some common reasons and troubleshooting tips at:
E   
E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
E   
E   Please note and check the following:
E   
E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
E     * The NumPy version is: "1.26.4"
E   
E   and make sure that they are the versions you expect.
E   Please carefully study the documentation linked above for further help.
E   
E   Original error was: No module named 'numpy.core._multiarray_umath'

The above exception was the direct cause of the following exception:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_multiprocessing.py:59: in <module>
    from pyani import run_multiprocessing, pyani_jobs, anib
pyani/pyani_jobs.py:35: in <module>
    from .pyani_config import SGE_WAIT
pyani/pyani_config.py:11: in <module>
    from matplotlib.colors import LinearSegmentedColormap
/usr/lib/python3/dist-packages/matplotlib/__init__.py:156: in <module>
    import numpy
/usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
    raise ImportError(msg) from e
E   ImportError: Error importing numpy: you should not try to import numpy from
E           its source directory; please exit the numpy source tree, and relaunch
E           your python interpreter from there.
__ ERROR collecting .pybuild/cpython3_3.13_pyani/build/tests/test_parsing.py ___
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/tests/test_parsing.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/numpy/core/__init__.py:24: in <module>
    from . import multiarray
/usr/lib/python3/dist-packages/numpy/core/multiarray.py:10: in <module>
    from . import overrides
/usr/lib/python3/dist-packages/numpy/core/overrides.py:8: in <module>
    from numpy.core._multiarray_umath import (
E   ModuleNotFoundError: No module named 'numpy.core._multiarray_umath'

During handling of the above exception, another exception occurred:
/usr/lib/python3/dist-packages/numpy/__init__.py:130: in <module>
    from numpy.__config__ import show as show_config
/usr/lib/python3/dist-packages/numpy/__config__.py:4: in <module>
    from numpy.core._multiarray_umath import (
/usr/lib/python3/dist-packages/numpy/core/__init__.py:50: in <module>
    raise ImportError(msg)
E   ImportError: 
E   
E   IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!
E   
E   Importing the numpy C-extensions failed. This error can happen for
E   many reasons, often due to issues with your setup or how NumPy was
E   installed.
E   
E   We have compiled some common reasons and troubleshooting tips at:
E   
E       https://numpy.org/devdocs/user/troubleshooting-importerror.html
E   
E   Please note and check the following:
E   
E     * The Python version is: Python3.13 from "/usr/bin/python3.13"
E     * The NumPy version is: "1.26.4"
E   
E   and make sure that they are the versions you expect.
E   Please carefully study the documentation linked above for further help.
E   
E   Original error was: No module named 'numpy.core._multiarray_umath'

The above exception was the direct cause of the following exception:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_parsing.py:8: in <module>
    from pyani import anim
pyani/anim.py:26: in <module>
    from . import pyani_config
pyani/pyani_config.py:11: in <module>
    from matplotlib.colors import LinearSegmentedColormap
/usr/lib/python3/dist-packages/matplotlib/__init__.py:156: in <module>
    import numpy
/usr/lib/python3/dist-packages/numpy/__init__.py:135: in <module>
    raise ImportError(msg) from e
E   ImportError: Error importing numpy: you should not try to import numpy from
E           its source directory; please exit the numpy source tree, and relaunch
E           your python interpreter from there.
___ ERROR collecting .pybuild/cpython3_3.13_pyani/build/tests/test_tetra.py ____
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build/tests/test_tetra.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
tests/test_tetra.py:58: in <module>
    import pandas as pd
/usr/lib/python3/dist-packages/pandas/__init__.py:19: in <module>
    raise ImportError(
E   ImportError: Unable to import required dependencies:
E   numpy: Error importing numpy: you should not try to import numpy from
E           its source directory; please exit the numpy source tree, and relaunch
E           your python interpreter from there.
=========================== short test summary info ============================
ERROR tests/test_anib.py
ERROR tests/test_anim.py
ERROR tests/test_concordance.py
ERROR tests/test_graphics.py
ERROR tests/test_jobs.py
ERROR tests/test_multiprocessing.py
ERROR tests/test_parsing.py
ERROR tests/test_tetra.py
!!!!!!!!!!!!!!!!!!! Interrupted: 8 errors during collection !!!!!!!!!!!!!!!!!!!!
============================== 8 errors in 0.36s ===============================
E: pybuild pybuild:389: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pyani/build; python3.13 -m pytest tests
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build; python3.12 -m pytest tests
============================= test session starts ==============================
platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>
plugins: typeguard-4.3.0
collected 56 items

tests/test_anib.py sss.....sss...ss                                      [ 28%]
tests/test_anim.py ......                                                [ 39%]
tests/test_concordance.py .s..                                           [ 46%]
tests/test_dependencies.py ......s.                                      [ 60%]
tests/test_graphics.py ......                                            [ 71%]
tests/test_jobs.py .........                                             [ 87%]
tests/test_multiprocessing.py ...                                        [ 92%]
tests/test_parsing.py .                                                  [ 94%]
tests/test_tetra.py ...                                                  [100%]

=============================== warnings summary ===============================
pyani/pyani_graphics.py:70
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani/pyani_graphics.py:70: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead.
    plt.register_cmap(cmap=pyani_config.CMAP_SPBND_BURD)

pyani/pyani_graphics.py:71
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani/pyani_graphics.py:71: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead.
    plt.register_cmap(cmap=pyani_config.CMAP_HADAMARD_BURD)

pyani/pyani_graphics.py:72
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani/pyani_graphics.py:72: MatplotlibDeprecationWarning: The register_cmap function was deprecated in Matplotlib 3.7 and will be removed two minor releases later. Use ``matplotlib.colormaps.register(name)`` instead.
    plt.register_cmap(cmap=pyani_config.CMAP_BURD)

.pybuild/cpython3_3.12_pyani/build/tests/test_anib.py::TestParsing::test_blastdir_processing
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani/anib.py:420: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
  You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
  A typical example is when you are setting values in a column of a DataFrame, like:
  
  df["col"][row_indexer] = value
  
  Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
  
  See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  
    results.alignment_lengths[org][org] = length

.pybuild/cpython3_3.12_pyani/build/tests/test_anim.py::TestDeltafileProcessing::test_process_deltadir
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani/anim.py:195: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
  You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
  A typical example is when you are setting values in a column of a DataFrame, like:
  
  df["col"][row_indexer] = value
  
  Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
  
  See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  
    results.alignment_lengths[org][org] = length

.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py:102: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
  You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
  A typical example is when you are setting values in a column of a DataFrame, like:
  
  df["col"][row_indexer] = value
  
  Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
  
  See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  
    data[columns[idx]][row] = 1.0

.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py:98: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
  You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
  A typical example is when you are setting values in a column of a DataFrame, like:
  
  df["col"][row_indexer] = value
  
  Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
  
  See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  
    data[columns[idx]][row] = float(val)

.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anim_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py:100: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
  You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
  A typical example is when you are setting values in a column of a DataFrame, like:
  
  df["col"][row_indexer] = value
  
  Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
  
  See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  
    data[columns[idx]][row] = 100.0

.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py:194: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
    lo_target = self.target["ANIb"].mask(self.target["ANIb"] >= 90).fillna(0)

.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_anib_concordance
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py:195: FutureWarning: Downcasting object dtype arrays on .fillna, .ffill, .bfill is deprecated and will change in a future version. Call result.infer_objects(copy=False) instead. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)`
    hi_target = self.target["ANIb"].mask(self.target["ANIb"] < 90).fillna(0)

.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_tetra.py::TestTETRA::test_correlations
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani/tetra.py:156: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
  You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
  A typical example is when you are setting values in a column of a DataFrame, like:
  
  df["col"][row_indexer] = value
  
  Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
  
  See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  
    correlations[org1][org2] = diffprods / math.sqrt(zdiffs2[0] * zdiffs2[1])

.pybuild/cpython3_3.12_pyani/build/tests/test_concordance.py::TestConcordance::test_tetra_concordance
.pybuild/cpython3_3.12_pyani/build/tests/test_tetra.py::TestTETRA::test_correlations
  /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_pyani/build/pyani/tetra.py:157: FutureWarning: ChainedAssignmentError: behaviour will change in pandas 3.0!
  You are setting values through chained assignment. Currently this works in certain cases, but when using Copy-on-Write (which will become the default behaviour in pandas 3.0) this will never work to update the original DataFrame or Series, because the intermediate object on which we are setting values will behave as a copy.
  A typical example is when you are setting values in a column of a DataFrame, like:
  
  df["col"][row_indexer] = value
  
  Use `df.loc[row_indexer, "col"] = values` instead, to perform the assignment in a single step and ensure this keeps updating the original `df`.
  
  See the caveats in the documentation: https://pandas.pydata.org/pandas-docs/stable/user_guide/indexing.html#returning-a-view-versus-a-copy
  
    correlations[org2][org1] = correlations[org1][org2]

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========== 46 passed, 10 skipped, 31 warnings in 113.59s (0:01:53) ============
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13
make: *** [debian/rules:7: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2024-10-24T17:53:20Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: arm64
Build Type: any
Build-Space: 532560
Build-Time: 121
Distribution: sid
Fail-Stage: build
Host Architecture: arm64
Install-Time: 168
Job: /tmp/debusine-fetch-exec-upload-empycl95/python-pyani_0.2.12-3.dsc
Machine Architecture: arm64
Package: python-pyani
Package-Time: 335
Source-Version: 0.2.12-3
Space: 532560
Status: attempted
Version: 0.2.12-3+bd1
--------------------------------------------------------------------------------
Finished at 2024-10-24T17:53:20Z
Build needed 00:05:35, 532560k disk space

Relations

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relates-to Binary package libpython3-dbg_3.12.6-1+debusine1_arm64

build log System… build a package… - 4 weeks, 2 days ago 22 hours, 44 minutes
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