sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-01.freexian.com
+==============================================================================+
| macs 3.0.2-1+bd1 (arm64) Thu, 24 Oct 2024 17:41:35 +0000 |
+==============================================================================+
Package: macs
Version: 3.0.2-1+bd1
Source Version: 3.0.2-1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/872923/system.tar.xz to /tmp/tmp.sbuild.YjXqVQygA8...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
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| Chroot Setup Commands |
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rm -f /etc/resolv.conf
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Copying /tmp/debusine-fetch-exec-upload-ywmjs22n/libpython3-all-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
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Copying /tmp/debusine-fetch-exec-upload-ywmjs22n/cython3-dbgsym_3.0.11+dfsg-1+debusine1_arm64.deb to /<<CHROOT>>...
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Copying /tmp/debusine-fetch-exec-upload-ywmjs22n/python3-hmmlearn-dbgsym_0.3.2-2+bd1_arm64.deb to /<<CHROOT>>...
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Copying /tmp/debusine-fetch-exec-upload-ywmjs22n/python3-cykhash-dbgsym_2.0.0-3+bd1_arm64.deb to /<<CHROOT>>...
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I: NOTICE: Log filtering will replace 'build/macs-eHRxVx/resolver-JelFFW' with '<<RESOLVERDIR>>'
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Get:1 file:/build/macs-eHRxVx/resolver-ts1sji/apt_archive ./ InRelease
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Ign:3 file:/build/macs-eHRxVx/resolver-ts1sji/apt_archive ./ Release.gpg
Get:4 http://deb.debian.org/debian sid InRelease [202 kB]
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Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9916 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 Components [4912 kB]
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Calculating upgrade...
The following packages will be upgraded:
apt base-passwd coreutils libapt-pkg6.0t64 libhtml-form-perl libkeyutils1
liblz1 libnet-ssleay-perl sysvinit-utils
9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:4 http://deb.debian.org/debian sid/main arm64 apt arm64 2.9.10 [1332 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 sysvinit-utils arm64 3.11-1 [33.0 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 libhtml-form-perl all 6.12-1 [32.3 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get:8 http://deb.debian.org/debian sid/main arm64 liblz1 arm64 1.15~pre2-1 [38.1 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB]
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Local sources
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/tmp/debusine-fetch-exec-upload-ywmjs22n/macs_3.0.2-1.dsc exists in /tmp/debusine-fetch-exec-upload-ywmjs22n; copying to chroot
I: NOTICE: Log filtering will replace 'build/macs-eHRxVx/macs-3.0.2' with '<<PKGBUILDDIR>>'
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| Install package build dependencies |
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Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Reading package lists...
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Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bc build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu help2man libasan8 libblas3
libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64
libexpat1 libexpat1-dev libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libgfortran5 libhwasan0 libisl23 libitm1 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
liblocale-gettext-perl liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2
libproc2-0 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib
libpython3.12t64 libpython3.13 libpython3.13-dev libpython3.13-minimal
libpython3.13-stdlib libsimde-dev libstdc++-14-dev libtirpc-common
libtirpc3t64 libtool libtsan2 libubsan1 linux-libc-dev m4 media-types
po-debconf procps pybuild-plugin-pyproject python3 python3-all
python3-all-dev python3-autocommand python3-build python3-cykhash
python3-decorator python3-dev python3-hmmlearn python3-inflect
python3-iniconfig python3-installer python3-jaraco.context
python3-jaraco.functools python3-jaraco.text python3-joblib python3-minimal
python3-more-itertools python3-numpy python3-packaging python3-pip
python3-pkg-resources python3-pluggy python3-pyproject-hooks python3-pytest
python3-scipy python3-setuptools python3-sklearn python3-sklearn-lib
python3-threadpoolctl python3-toml python3-typeguard
python3-typing-extensions python3-wheel python3-zipp python3.12
python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc cython-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex
bison gdb gcc-doc gdb-aarch64-linux-gnu libc-devtools glibc-doc
libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
libmail-box-perl python3-doc python3-tk python3-venv python-build-doc
python-installer-doc python-joblib-doc gfortran python-numpy-doc
python-scipy-doc python-setuptools-doc python3-dap python-sklearn-doc
ipython3 python3.12-venv python3.12-doc binfmt-support python3.13-venv
python3.13-doc
Recommended packages:
manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults
python3-simplejson python3-psutil python3-pygments python3-pil
python3-matplotlib
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bc build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu help2man libasan8 libblas3
libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64
libexpat1 libexpat1-dev libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libgfortran5 libhwasan0 libisl23 libitm1 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
liblocale-gettext-perl liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2
libproc2-0 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib
libpython3.12t64 libpython3.13 libpython3.13-dev libpython3.13-minimal
libpython3.13-stdlib libsimde-dev libstdc++-14-dev libtirpc-common
libtirpc3t64 libtool libtsan2 libubsan1 linux-libc-dev m4 media-types
po-debconf procps pybuild-plugin-pyproject python3 python3-all
python3-all-dev python3-autocommand python3-build python3-cykhash
python3-decorator python3-dev python3-hmmlearn python3-inflect
python3-iniconfig python3-installer python3-jaraco.context
python3-jaraco.functools python3-jaraco.text python3-joblib python3-minimal
python3-more-itertools python3-numpy python3-packaging python3-pip
python3-pkg-resources python3-pluggy python3-pyproject-hooks python3-pytest
python3-scipy python3-setuptools python3-sklearn python3-sklearn-lib
python3-threadpoolctl python3-toml python3-typeguard
python3-typing-extensions python3-wheel python3-zipp python3.12
python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rpcsvc-proto sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 124 newly installed, 0 to remove and 0 not upgraded.
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Get:14 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB]
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Get:16 file:/<<BUILDDIR>>/resolver-ts1sji/apt_archive ./ python3-numpy 1:1.26.4+ds-11+bootstrap1 [3815 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
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Get:20 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-1 [671 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 libpython3.13-minimal arm64 3.13.0-1 [849 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 python3.13-minimal arm64 3.13.0-1 [1835 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 procps arm64 2:4.0.4-6 [872 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:33 file:/<<BUILDDIR>>/resolver-ts1sji/apt_archive ./ python3-scipy 1.13.1-5+nocheck1 [18.1 MB]
Get:34 file:/<<BUILDDIR>>/resolver-ts1sji/apt_archive ./ python3-hmmlearn 0.3.2-2+bd1 [132 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 bc arm64 1.07.1-4 [101 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.4-1 [2440 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1 [59.7 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7 [9164 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-7 [1280 B]
Get:46 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:47 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:48 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-7 [42.2 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-7 [24.2 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-7 [2578 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-7 [1162 kB]
Get:52 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-7 [2386 kB]
Get:53 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-7 [1040 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-7 [1442 kB]
Get:55 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-7 [2365 kB]
Get:56 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB]
Get:57 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB]
Get:58 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:59 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:60 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB]
Get:62 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB]
Get:63 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:64 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:65 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:66 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:71 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:81 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 75.2.0-1 [731 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 help2man arm64 1.49.3 [198 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-7 [361 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 libsimde-dev all 0.8.2-1 [465 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 python3-packaging all 24.1-1 [45.8 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 python3-pyproject-hooks all 1.1.0-2 [11.3 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 python3-toml all 0.10.2-1 [16.2 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 python3-wheel all 0.44.0-2 [53.4 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 python3-build all 1.2.2-1 [36.0 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 pybuild-plugin-pyproject all 6.20240824 [11.2 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 python3-decorator all 5.1.1-5 [15.1 kB]
Get:117 http://deb.debian.org/debian sid/main arm64 python3-joblib all 1.3.2-4 [216 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 python3-sklearn-lib arm64 1.4.2+dfsg-6 [3213 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 python3-sklearn all 1.4.2+dfsg-6 [2248 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get:122 http://deb.debian.org/debian sid/main arm64 python3-pip all 24.2+dfsg-1 [1434 kB]
Get:123 http://deb.debian.org/debian sid/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 python3-pytest all 8.3.3-1 [249 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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Setting up python3-minimal (3.12.6-1+debusine1) ...
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.4-1
Package versions: appstream_1.0.3-1 apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 bc_1.07.1-4 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-aarch64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-1+debusine1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-7 g++-14-aarch64-linux-gnu_14.2.0-7 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-7 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libpython3-stdlib_3.12.6-1+debusine1 libpython3.12-dev_3.12.7-1 libpython3.12-minimal_3.12.7-1 libpython3.12-stdlib_3.12.7-1 libpython3.12t64_3.12.7-1 libpython3.13_3.13.0-1 libpython3.13-dev_3.13.0-1 libpython3.13-minimal_3.13.0-1 libpython3.13-stdlib_3.13.0-1 libreadline8t64_8.2-5 libregexp-wildcards-perl_1.05-3 librole-tiny-perl_2.002004-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b4 libsasl2-2_2.1.28+dfsg1-8 libsasl2-modules-db_2.1.28+dfsg1-8 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsereal-decoder-perl_5.004+ds-1+b3 libsereal-encoder-perl_5.004+ds-1+b3 libsframe1_2.43.1-5 libsimde-dev_0.8.2-1 libsmartcols1_2.40.2-9 libsort-versions-perl_1.62-3 libsqlite3-0_3.46.1-1 libss2_1.47.1-1 libssh2-1t64_1.11.1-1 libssl3t64_3.3.2-1 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 libstemmer0d_2.2.0-4+b1 libstrictures-perl_2.000006-1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3+b3 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python3-installer_0.7.0+dfsg1-3 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-joblib_1.3.2-4 python3-minimal_3.12.6-1+debusine1 python3-more-itertools_10.5.0-1 python3-numpy_1:1.26.4+ds-11+bootstrap1 python3-packaging_24.1-1 python3-pip_24.2+dfsg-1 python3-pkg-resources_75.2.0-1 python3-pluggy_1.5.0-1 python3-pyproject-hooks_1.1.0-2 python3-pytest_8.3.3-1 python3-scipy_1.13.1-5+nocheck1 python3-setuptools_75.2.0-1 python3-sklearn_1.4.2+dfsg-6 python3-sklearn-lib_1.4.2+dfsg-6 python3-threadpoolctl_3.1.0-1 python3-toml_0.10.2-1 python3-typeguard_4.3.0-1 python3-typing-extensions_4.12.2-2 python3-wheel_0.44.0-2 python3-zipp_3.20.2-1 python3.12_3.12.7-1 python3.12-dev_3.12.7-1 python3.12-minimal_3.12.7-1 python3.13_3.13.0-1 python3.13-dev_3.13.0-1 python3.13-minimal_3.13.0-1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 shared-mime-info_2.4-5+b1 sysvinit-utils_3.11-1 t1utils_1.41-4 tar_1.35+dfsg-3 tzdata_2024b-3 ucf_3.0043+nmu1 unzip_6.0-28 util-linux_2.40.2-9 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: macs
Binary: macs
Architecture: any
Version: 3.0.2-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <crusoe@debian.org>, Andreas Tille <tille@debian.org>
Homepage: https://github.com/taoliu/MACS/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/macs
Vcs-Git: https://salsa.debian.org/med-team/macs.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc
Package-List:
macs deb science optional arch=any
Checksums-Sha1:
add8dce2a95862e95e94ada63a56f1035023163b 197484503 macs_3.0.2.orig.tar.gz
037228c491ed98c0b9fda258c31e37bf6df33786 1267764 macs_3.0.2-1.debian.tar.xz
Checksums-Sha256:
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73f781c36af39dd8db9d136cc7247a00b43d54f1c1b522f9aaf22a5f5e83b0d1 1267764 macs_3.0.2-1.debian.tar.xz
Files:
2f1ec9ab99edddaf84958b65c305532e 197484503 macs_3.0.2.orig.tar.gz
49878947e75c0f6c36647c4db924eb18 1267764 macs_3.0.2-1.debian.tar.xz
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gpgv: Signature made Sat Sep 7 23:10:03 2024 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./macs_3.0.2-1.dsc: no acceptable signature found
dpkg-source: info: extracting macs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking macs_3.0.2.orig.tar.gz
dpkg-source: info: unpacking macs_3.0.2-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying keep_debug
dpkg-source: info: applying simde.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.0.2-1+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package macs
dpkg-buildpackage: info: source version 3.0.2-1+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
dpkg-source: info: using options from macs-3.0.2/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
debian/rules clean
dh clean --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -Rf test/macs3.0.2-1+bd1* test/speedtest*
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for pyx in $(find MACS3/ -name "*.pyx"); do \
rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
dh_auto_build
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_MACS3
* Building wheel...
Compiling MACS3/Signal/HMMR_EM.pyx because it changed.
Compiling MACS3/Signal/HMMR_Signal_Processing.pyx because it changed.
Compiling MACS3/Signal/HMMR_HMM.pyx because it changed.
Compiling MACS3/Signal/Prob.pyx because it changed.
Compiling MACS3/Signal/Region.pyx because it changed.
Compiling MACS3/Signal/Pileup.pyx because it changed.
Compiling MACS3/Signal/PileupV2.pyx because it changed.
Compiling MACS3/Signal/PeakModel.pyx because it changed.
Compiling MACS3/Signal/PeakDetect.pyx because it changed.
Compiling MACS3/Signal/SignalProcessing.pyx because it changed.
Compiling MACS3/Signal/FixWidthTrack.pyx because it changed.
Compiling MACS3/Signal/PairedEndTrack.pyx because it changed.
Compiling MACS3/Signal/BedGraph.pyx because it changed.
Compiling MACS3/Signal/ScoreTrack.pyx because it changed.
Compiling MACS3/Signal/CallPeakUnit.pyx because it changed.
Compiling MACS3/Signal/VariantStat.pyx because it changed.
Compiling MACS3/Signal/ReadAlignment.pyx because it changed.
Compiling MACS3/Signal/RACollection.pyx because it changed.
Compiling MACS3/Signal/UnitigRACollection.pyx because it changed.
Compiling MACS3/Signal/PosReadsInfo.pyx because it changed.
Compiling MACS3/Signal/PeakVariants.pyx because it changed.
Compiling MACS3/IO/Parser.pyx because it changed.
Compiling MACS3/IO/PeakIO.pyx because it changed.
Compiling MACS3/IO/BedGraphIO.pyx because it changed.
Compiling MACS3/IO/BAM.pyx because it changed.
[ 1/25] Cythonizing MACS3/IO/BAM.pyx
[ 2/25] Cythonizing MACS3/IO/BedGraphIO.pyx
[ 3/25] Cythonizing MACS3/IO/Parser.pyx
[ 4/25] Cythonizing MACS3/IO/PeakIO.pyx
[ 5/25] Cythonizing MACS3/Signal/BedGraph.pyx
[ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.pyx
[ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.pyx
[ 8/25] Cythonizing MACS3/Signal/HMMR_EM.pyx
[ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.pyx
[10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.pyx
[11/25] Cythonizing MACS3/Signal/PairedEndTrack.pyx
[12/25] Cythonizing MACS3/Signal/PeakDetect.pyx
[13/25] Cythonizing MACS3/Signal/PeakModel.pyx
[14/25] Cythonizing MACS3/Signal/PeakVariants.pyx
[15/25] Cythonizing MACS3/Signal/Pileup.pyx
[16/25] Cythonizing MACS3/Signal/PileupV2.pyx
[17/25] Cythonizing MACS3/Signal/PosReadsInfo.pyx
[18/25] Cythonizing MACS3/Signal/Prob.pyx
[19/25] Cythonizing MACS3/Signal/RACollection.pyx
[20/25] Cythonizing MACS3/Signal/ReadAlignment.pyx
[21/25] Cythonizing MACS3/Signal/Region.pyx
[22/25] Cythonizing MACS3/Signal/ScoreTrack.pyx
[23/25] Cythonizing MACS3/Signal/SignalProcessing.pyx
[24/25] Cythonizing MACS3/Signal/UnitigRACollection.pyx
[25/25] Cythonizing MACS3/Signal/VariantStat.pyx
running bdist_wheel
running build
running build_py
creating build/lib.linux-aarch64-cpython-313/MACS3
copying MACS3/__init__.py -> build/lib.linux-aarch64-cpython-313/MACS3
creating build/lib.linux-aarch64-cpython-313/MACS3/IO
copying MACS3/IO/OutputWriter.py -> build/lib.linux-aarch64-cpython-313/MACS3/IO
copying MACS3/IO/__init__.py -> build/lib.linux-aarch64-cpython-313/MACS3/IO
creating build/lib.linux-aarch64-cpython-313/MACS3/Signal
copying MACS3/Signal/__init__.py -> build/lib.linux-aarch64-cpython-313/MACS3/Signal
creating build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/__init__.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
creating build/lib.linux-aarch64-cpython-313/MACS3/Utilities
copying MACS3/Utilities/Constants.py -> build/lib.linux-aarch64-cpython-313/MACS3/Utilities
copying MACS3/Utilities/OptValidator.py -> build/lib.linux-aarch64-cpython-313/MACS3/Utilities
copying MACS3/Utilities/Logger.py -> build/lib.linux-aarch64-cpython-313/MACS3/Utilities
copying MACS3/Utilities/__init__.py -> build/lib.linux-aarch64-cpython-313/MACS3/Utilities
running build_ext
building 'MACS3.Signal.HMMR_EM' extension
creating build/temp.linux-aarch64-cpython-313/MACS3/Signal
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/HMMR_EM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/HMMR_EM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.HMMR_Signal_Processing' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.HMMR_HMM' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/HMMR_HMM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/HMMR_HMM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.Prob' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/Prob.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/Prob.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/Prob.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/Prob.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.Region' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/Region.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/Region.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/Region.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/Region.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.Pileup' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/Pileup.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/Pileup.o -w -O3
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/cPosValCalculation.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/Pileup.o build/temp.linux-aarch64-cpython-313/MACS3/Signal/cPosValCalculation.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/Pileup.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.PileupV2' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/PileupV2.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/PileupV2.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/PileupV2.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/PileupV2.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakModel' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/PeakModel.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/PeakModel.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/PeakModel.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/PeakModel.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakDetect' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/PeakDetect.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/PeakDetect.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.SignalProcessing' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/SignalProcessing.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/SignalProcessing.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.FixWidthTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/FixWidthTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/FixWidthTrack.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.PairedEndTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/PairedEndTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/PairedEndTrack.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.BedGraph' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/BedGraph.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/BedGraph.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/BedGraph.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/BedGraph.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.ScoreTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/ScoreTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/ScoreTrack.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.CallPeakUnit' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/CallPeakUnit.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/CallPeakUnit.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.VariantStat' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/VariantStat.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/VariantStat.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/VariantStat.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/VariantStat.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.ReadAlignment' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/ReadAlignment.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/ReadAlignment.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.RACollection' extension
creating build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/RACollection.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/swalign.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/htab.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mag.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/misc.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rle.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rope.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/RACollection.o build/temp.linux-aarch64-cpython-313/MACS3/Signal/swalign.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/bfc.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/bseq.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/bubble.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/htab.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/ksw.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/kthread.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/mag.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/misc.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/mrope.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/rld0.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/rle.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/rope.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/unitig.o -L/usr/lib/aarch64-linux-gnu -lm -lz -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/RACollection.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.UnitigRACollection' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/UnitigRACollection.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/UnitigRACollection.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.PosReadsInfo' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/PosReadsInfo.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/PosReadsInfo.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakVariants' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/PeakVariants.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/PeakVariants.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-aarch64-linux-gnu.so
building 'MACS3.IO.Parser' extension
creating build/temp.linux-aarch64-cpython-313/MACS3/IO
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/IO/Parser.c -o build/temp.linux-aarch64-cpython-313/MACS3/IO/Parser.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/IO/Parser.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/IO/Parser.cpython-313-aarch64-linux-gnu.so
building 'MACS3.IO.PeakIO' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/PeakIO.c -o build/temp.linux-aarch64-cpython-313/MACS3/IO/PeakIO.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/IO/PeakIO.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/IO/PeakIO.cpython-313-aarch64-linux-gnu.so
building 'MACS3.IO.BedGraphIO' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-aarch64-cpython-313/MACS3/IO/BedGraphIO.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/IO/BedGraphIO.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-aarch64-linux-gnu.so
building 'MACS3.IO.BAM' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/IO/BAM.c -o build/temp.linux-aarch64-cpython-313/MACS3/IO/BAM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/IO/BAM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/IO/BAM.cpython-313-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.13
copying and adjusting bin/macs3 -> build/scripts-3.13
changing mode of build/scripts-3.13/macs3 from 644 to 755
installing to build/bdist.linux-aarch64/wheel
running install
running install_lib
creating build/bdist.linux-aarch64/wheel
creating build/bdist.linux-aarch64/wheel/MACS3
creating build/bdist.linux-aarch64/wheel/MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
creating build/bdist.linux-aarch64/wheel/MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/IO/BAM.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/IO/PeakIO.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/IO/Parser.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/IO/OutputWriter.py -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/IO/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
creating build/bdist.linux-aarch64/wheel/MACS3/Utilities
copying build/lib.linux-aarch64-cpython-313/MACS3/Utilities/Constants.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-313/MACS3/Utilities/OptValidator.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-313/MACS3/Utilities/Logger.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-313/MACS3/Utilities/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
creating build/bdist.linux-aarch64/wheel/MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/RACollection.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/Pileup.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/Region.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/VariantStat.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/Prob.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/BedGraph.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/PileupV2.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/PeakModel.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3
running install_egg_info
running egg_info
creating MACS3.egg-info
writing MACS3.egg-info/PKG-INFO
writing dependency_links to MACS3.egg-info/dependency_links.txt
writing requirements to MACS3.egg-info/requires.txt
writing top-level names to MACS3.egg-info/top_level.txt
writing manifest file 'MACS3.egg-info/SOURCES.txt'
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
reading manifest file 'MACS3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'make_docker_base.sh'
warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'MACS3.egg-info/SOURCES.txt'
Copying MACS3.egg-info to build/bdist.linux-aarch64/wheel/./MACS3-3.0.2.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts
copying build/scripts-3.13/macs3 -> build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts
changing mode of build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts/macs3 to 755
creating build/bdist.linux-aarch64/wheel/MACS3-3.0.2.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_MACS3/.tmp-vu4x3b97/MACS3-3.0.2-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'MACS3/__init__.py'
adding 'MACS3/Commands/__init__.py'
adding 'MACS3/Commands/bdgbroadcall_cmd.py'
adding 'MACS3/Commands/bdgcmp_cmd.py'
adding 'MACS3/Commands/bdgdiff_cmd.py'
adding 'MACS3/Commands/bdgopt_cmd.py'
adding 'MACS3/Commands/bdgpeakcall_cmd.py'
adding 'MACS3/Commands/callpeak_cmd.py'
adding 'MACS3/Commands/callvar_cmd.py'
adding 'MACS3/Commands/cmbreps_cmd.py'
adding 'MACS3/Commands/diffpeak_cmd.py'
adding 'MACS3/Commands/filterdup_cmd.py'
adding 'MACS3/Commands/hmmratac_cmd.py'
adding 'MACS3/Commands/pileup_cmd.py'
adding 'MACS3/Commands/predictd_cmd.py'
adding 'MACS3/Commands/randsample_cmd.py'
adding 'MACS3/Commands/refinepeak_cmd.py'
adding 'MACS3/IO/BAM.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/IO/BedGraphIO.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/IO/OutputWriter.py'
adding 'MACS3/IO/Parser.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/IO/PeakIO.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/IO/__init__.py'
adding 'MACS3/Signal/BedGraph.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/CallPeakUnit.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/FixWidthTrack.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_EM.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_HMM.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PairedEndTrack.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakDetect.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakModel.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakVariants.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Pileup.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PileupV2.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PosReadsInfo.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Prob.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/RACollection.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/ReadAlignment.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Region.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/ScoreTrack.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/SignalProcessing.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/UnitigRACollection.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/VariantStat.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/__init__.py'
adding 'MACS3/Utilities/Constants.py'
adding 'MACS3/Utilities/Logger.py'
adding 'MACS3/Utilities/OptValidator.py'
adding 'MACS3/Utilities/__init__.py'
adding 'MACS3-3.0.2.data/scripts/macs3'
adding 'MACS3-3.0.2.dist-info/LICENSE'
adding 'MACS3-3.0.2.dist-info/METADATA'
adding 'MACS3-3.0.2.dist-info/WHEEL'
adding 'MACS3-3.0.2.dist-info/top_level.txt'
adding 'MACS3-3.0.2.dist-info/RECORD'
removing build/bdist.linux-aarch64/wheel
Successfully built MACS3-3.0.2-cp313-cp313-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3
* Building wheel...
running bdist_wheel
running build
running build_py
creating build/lib.linux-aarch64-cpython-312/MACS3
copying MACS3/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3
creating build/lib.linux-aarch64-cpython-312/MACS3/IO
copying MACS3/IO/OutputWriter.py -> build/lib.linux-aarch64-cpython-312/MACS3/IO
copying MACS3/IO/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3/IO
creating build/lib.linux-aarch64-cpython-312/MACS3/Signal
copying MACS3/Signal/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3/Signal
creating build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
creating build/lib.linux-aarch64-cpython-312/MACS3/Utilities
copying MACS3/Utilities/Constants.py -> build/lib.linux-aarch64-cpython-312/MACS3/Utilities
copying MACS3/Utilities/OptValidator.py -> build/lib.linux-aarch64-cpython-312/MACS3/Utilities
copying MACS3/Utilities/Logger.py -> build/lib.linux-aarch64-cpython-312/MACS3/Utilities
copying MACS3/Utilities/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3/Utilities
running build_ext
building 'MACS3.Signal.HMMR_EM' extension
creating build/temp.linux-aarch64-cpython-312/MACS3/Signal
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_EM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_EM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_EM.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.HMMR_Signal_Processing' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.HMMR_HMM' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_HMM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_HMM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_HMM.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.Prob' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/Prob.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/Prob.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/Prob.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/Prob.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.Region' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/Region.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/Region.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/Region.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/Region.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.Pileup' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/Pileup.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/Pileup.o -w -O3
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/cPosValCalculation.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/Pileup.o build/temp.linux-aarch64-cpython-312/MACS3/Signal/cPosValCalculation.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/Pileup.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PileupV2' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PileupV2.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PileupV2.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PileupV2.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PileupV2.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakModel' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PeakModel.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakModel.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakModel.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakModel.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakDetect' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakDetect.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakDetect.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakDetect.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.SignalProcessing' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/SignalProcessing.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/SignalProcessing.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/SignalProcessing.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.FixWidthTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/FixWidthTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/FixWidthTrack.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/FixWidthTrack.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PairedEndTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PairedEndTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PairedEndTrack.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PairedEndTrack.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.BedGraph' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/BedGraph.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/BedGraph.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/BedGraph.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/BedGraph.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.ScoreTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/ScoreTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/ScoreTrack.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/ScoreTrack.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.CallPeakUnit' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/CallPeakUnit.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/CallPeakUnit.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/CallPeakUnit.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.VariantStat' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/VariantStat.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/VariantStat.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/VariantStat.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/VariantStat.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.ReadAlignment' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/ReadAlignment.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/ReadAlignment.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/ReadAlignment.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.RACollection' extension
creating build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/Signal/RACollection.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/Signal/swalign.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/htab.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/mag.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/misc.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/rle.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/rope.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/RACollection.o build/temp.linux-aarch64-cpython-312/MACS3/Signal/swalign.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bfc.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bseq.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bubble.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/htab.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/ksw.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/kthread.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/mag.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/misc.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/mrope.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rld0.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rle.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rope.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/unitig.o -L/usr/lib/aarch64-linux-gnu -lm -lz -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/RACollection.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.UnitigRACollection' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/UnitigRACollection.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/UnitigRACollection.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/UnitigRACollection.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PosReadsInfo' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PosReadsInfo.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PosReadsInfo.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PosReadsInfo.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakVariants' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakVariants.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakVariants.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakVariants.cpython-312-aarch64-linux-gnu.so
building 'MACS3.IO.Parser' extension
creating build/temp.linux-aarch64-cpython-312/MACS3/IO
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/IO/Parser.c -o build/temp.linux-aarch64-cpython-312/MACS3/IO/Parser.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/IO/Parser.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/IO/Parser.cpython-312-aarch64-linux-gnu.so
building 'MACS3.IO.PeakIO' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c MACS3/IO/PeakIO.c -o build/temp.linux-aarch64-cpython-312/MACS3/IO/PeakIO.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/IO/PeakIO.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/IO/PeakIO.cpython-312-aarch64-linux-gnu.so
building 'MACS3.IO.BedGraphIO' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-aarch64-cpython-312/MACS3/IO/BedGraphIO.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/IO/BedGraphIO.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/IO/BedGraphIO.cpython-312-aarch64-linux-gnu.so
building 'MACS3.IO.BAM' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/IO/BAM.c -o build/temp.linux-aarch64-cpython-312/MACS3/IO/BAM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/IO/BAM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/IO/BAM.cpython-312-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.12
copying and adjusting bin/macs3 -> build/scripts-3.12
changing mode of build/scripts-3.12/macs3 from 644 to 755
installing to build/bdist.linux-aarch64/wheel
running install
running install_lib
creating build/bdist.linux-aarch64/wheel
creating build/bdist.linux-aarch64/wheel/MACS3
creating build/bdist.linux-aarch64/wheel/MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
creating build/bdist.linux-aarch64/wheel/MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/BAM.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/BedGraphIO.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/Parser.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/PeakIO.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/OutputWriter.py -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/IO
creating build/bdist.linux-aarch64/wheel/MACS3/Utilities
copying build/lib.linux-aarch64-cpython-312/MACS3/Utilities/Constants.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-312/MACS3/Utilities/OptValidator.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-312/MACS3/Utilities/Logger.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-312/MACS3/Utilities/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
creating build/bdist.linux-aarch64/wheel/MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/FixWidthTrack.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakDetect.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PairedEndTrack.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_EM.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakVariants.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/Prob.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/Pileup.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/RACollection.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PosReadsInfo.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/Region.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/CallPeakUnit.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/BedGraph.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/VariantStat.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_HMM.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/ReadAlignment.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/SignalProcessing.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/UnitigRACollection.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PileupV2.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakModel.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/ScoreTrack.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3
running install_egg_info
running egg_info
writing MACS3.egg-info/PKG-INFO
writing dependency_links to MACS3.egg-info/dependency_links.txt
writing requirements to MACS3.egg-info/requires.txt
writing top-level names to MACS3.egg-info/top_level.txt
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
reading manifest file 'MACS3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'make_docker_base.sh'
warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'MACS3.egg-info/SOURCES.txt'
Copying MACS3.egg-info to build/bdist.linux-aarch64/wheel/./MACS3-3.0.2.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts
copying build/scripts-3.12/macs3 -> build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts
changing mode of build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts/macs3 to 755
creating build/bdist.linux-aarch64/wheel/MACS3-3.0.2.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3/.tmp-4adjazda/MACS3-3.0.2-cp312-cp312-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'MACS3/__init__.py'
adding 'MACS3/Commands/__init__.py'
adding 'MACS3/Commands/bdgbroadcall_cmd.py'
adding 'MACS3/Commands/bdgcmp_cmd.py'
adding 'MACS3/Commands/bdgdiff_cmd.py'
adding 'MACS3/Commands/bdgopt_cmd.py'
adding 'MACS3/Commands/bdgpeakcall_cmd.py'
adding 'MACS3/Commands/callpeak_cmd.py'
adding 'MACS3/Commands/callvar_cmd.py'
adding 'MACS3/Commands/cmbreps_cmd.py'
adding 'MACS3/Commands/diffpeak_cmd.py'
adding 'MACS3/Commands/filterdup_cmd.py'
adding 'MACS3/Commands/hmmratac_cmd.py'
adding 'MACS3/Commands/pileup_cmd.py'
adding 'MACS3/Commands/predictd_cmd.py'
adding 'MACS3/Commands/randsample_cmd.py'
adding 'MACS3/Commands/refinepeak_cmd.py'
adding 'MACS3/IO/BAM.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/IO/BedGraphIO.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/IO/OutputWriter.py'
adding 'MACS3/IO/Parser.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/IO/PeakIO.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/IO/__init__.py'
adding 'MACS3/Signal/BedGraph.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/CallPeakUnit.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/FixWidthTrack.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_EM.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_HMM.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PairedEndTrack.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakDetect.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakModel.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakVariants.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Pileup.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PileupV2.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PosReadsInfo.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Prob.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/RACollection.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/ReadAlignment.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Region.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/ScoreTrack.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/SignalProcessing.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/UnitigRACollection.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/VariantStat.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/__init__.py'
adding 'MACS3/Utilities/Constants.py'
adding 'MACS3/Utilities/Logger.py'
adding 'MACS3/Utilities/OptValidator.py'
adding 'MACS3/Utilities/__init__.py'
adding 'MACS3-3.0.2.data/scripts/macs3'
adding 'MACS3-3.0.2.dist-info/LICENSE'
adding 'MACS3-3.0.2.dist-info/METADATA'
adding 'MACS3-3.0.2.dist-info/WHEEL'
adding 'MACS3-3.0.2.dist-info/top_level.txt'
adding 'MACS3-3.0.2.dist-info/RECORD'
removing build/bdist.linux-aarch64/wheel
Successfully built MACS3-3.0.2-cp312-cp312-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module
PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \
--no-discard-stderr --no-info \
--name "macs3 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs3" > debian/macs3.1
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \
"[NAME]\nmac3_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \
> debian/macs3_${subcommand}-man-include; done
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \
PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \
--no-discard-stderr --no-info --version-string="3.0.2" \
--include debian/macs3_${subcommand}-man-include \
"python3 bin/macs3 ${subcommand}" > \
debian/macs3_${subcommand}.1; done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_MACS3/build; python3.13 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_MACS3/build
configfile: pyproject.toml
plugins: typeguard-4.3.0
collected 64 items / 2 errors
==================================== ERRORS ====================================
____________________ ERROR collecting test/test_HMMR_HMM.py ____________________
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_MACS3/build/test/test_HMMR_HMM.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/sklearn/__check_build/__init__.py:45: in <module>
from ._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn.__check_build._check_build'
During handling of the above exception, another exception occurred:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
test/test_HMMR_HMM.py:3: in <module>
from MACS3.Signal.HMMR_HMM import *
MACS3/Signal/HMMR_HMM.pyx:24: in init MACS3.Signal.HMMR_HMM
???
/usr/lib/python3/dist-packages/hmmlearn/hmm.py:9: in <module>
from sklearn import cluster
/usr/lib/python3/dist-packages/sklearn/__init__.py:83: in <module>
from . import (
/usr/lib/python3/dist-packages/sklearn/__check_build/__init__.py:47: in <module>
raise_build_error(e)
/usr/lib/python3/dist-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError("""%s
E ImportError: No module named 'sklearn.__check_build._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib/python3/dist-packages/sklearn/__check_build:
E _check_build.cpython-312-aarch64-linux-gnu.so__pycache__ __init__.py
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
__________________ ERROR collecting test/test_HMMR_poisson.py __________________
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_MACS3/build/test/test_HMMR_poisson.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3/dist-packages/sklearn/__check_build/__init__.py:45: in <module>
from ._check_build import check_build # noqa
E ModuleNotFoundError: No module named 'sklearn.__check_build._check_build'
During handling of the above exception, another exception occurred:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
test/test_HMMR_poisson.py:9: in <module>
from hmmlearn.hmm import PoissonHMM
/usr/lib/python3/dist-packages/hmmlearn/hmm.py:9: in <module>
from sklearn import cluster
/usr/lib/python3/dist-packages/sklearn/__init__.py:83: in <module>
from . import (
/usr/lib/python3/dist-packages/sklearn/__check_build/__init__.py:47: in <module>
raise_build_error(e)
/usr/lib/python3/dist-packages/sklearn/__check_build/__init__.py:31: in raise_build_error
raise ImportError("""%s
E ImportError: No module named 'sklearn.__check_build._check_build'
E ___________________________________________________________________________
E Contents of /usr/lib/python3/dist-packages/sklearn/__check_build:
E _check_build.cpython-312-aarch64-linux-gnu.so__pycache__ __init__.py
E ___________________________________________________________________________
E It seems that scikit-learn has not been built correctly.
E
E If you have installed scikit-learn from source, please do not forget
E to build the package before using it: run `python setup.py install` or
E `make` in the source directory.
E
E If you have used an installer, please check that it is suited for your
E Python version, your operating system and your platform.
=========================== short test summary info ============================
ERROR test/test_HMMR_HMM.py
ERROR test/test_HMMR_poisson.py
!!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!!
============================== 2 errors in 0.38s ===============================
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_MACS3/build; python3.13 -m pytest test
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3/build; python3.12 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3/build
configfile: pyproject.toml
plugins: typeguard-4.3.0
collected 68 items
test/test_BAMBAI.py ........... [ 16%]
test/test_BedGraph.py ... [ 20%]
test/test_FixWidthTrack.py .... [ 26%]
test/test_HMMR_HMM.py ss [ 29%]
test/test_HMMR_poisson.py .. [ 32%]
test/test_PairedEndTrack.py .... [ 38%]
test/test_Parser.py ... [ 42%]
test/test_PeakIO.py . [ 44%]
test/test_Pileup.py .......... [ 58%]
test/test_Prob.py ................ [ 82%]
test/test_Region.py ..... [ 89%]
test/test_ScoreTrack.py .... [ 95%]
test/test_SignalProcessing.py s. [ 98%]
test/test_online.py . [100%]
======================== 65 passed, 3 skipped in 7.06s =========================
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.13 3.12" returned exit code 13
make[1]: *** [debian/rules:42: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:18: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2024-10-24T17:54:10Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: any
Build-Space: 1487180
Build-Time: 641
Distribution: sid
Fail-Stage: build
Host Architecture: arm64
Install-Time: 63
Job: /tmp/debusine-fetch-exec-upload-ywmjs22n/macs_3.0.2-1.dsc
Machine Architecture: arm64
Package: macs
Package-Time: 755
Source-Version: 3.0.2-1
Space: 1487180
Status: attempted
Version: 3.0.2-1+bd1
--------------------------------------------------------------------------------
Finished at 2024-10-24T17:54:10Z
Build needed 00:12:35, 1487180k disk space