sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-08.freexian.com
+==============================================================================+
| macs 3.0.2-1+bd1 (arm64) Thu, 24 Oct 2024 18:12:37 +0000 |
+==============================================================================+
Package: macs
Version: 3.0.2-1+bd1
Source Version: 3.0.2-1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/872923/system.tar.xz to /tmp/tmp.sbuild.9uwKa1P7fV...
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The following packages will be upgraded:
apt base-passwd coreutils libapt-pkg6.0t64 libhtml-form-perl libkeyutils1
liblz1 libnet-ssleay-perl sysvinit-utils
9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:6 http://deb.debian.org/debian sid/main arm64 libhtml-form-perl all 6.12-1 [32.3 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get:8 http://deb.debian.org/debian sid/main arm64 liblz1 arm64 1.15~pre2-1 [38.1 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB]
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Local sources
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Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Reading package lists...
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Install main build dependencies (apt-based resolver)
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bc build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu help2man libasan8 libblas3
libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64
libexpat1 libexpat1-dev libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libgfortran5 libhwasan0 libisl23 libitm1 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
liblocale-gettext-perl liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2
libproc2-0 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib
libpython3.12t64 libpython3.13 libpython3.13-dev libpython3.13-minimal
libpython3.13-stdlib libsimde-dev libstdc++-14-dev libtirpc-common
libtirpc3t64 libtool libtsan2 libubsan1 linux-libc-dev m4 media-types
po-debconf procps pybuild-plugin-pyproject python3 python3-all
python3-all-dev python3-autocommand python3-build python3-cykhash
python3-decorator python3-dev python3-hmmlearn python3-inflect
python3-iniconfig python3-installer python3-jaraco.context
python3-jaraco.functools python3-jaraco.text python3-joblib python3-minimal
python3-more-itertools python3-numpy python3-packaging python3-pip
python3-pkg-resources python3-pluggy python3-pyproject-hooks python3-pytest
python3-scipy python3-setuptools python3-sklearn python3-sklearn-lib
python3-threadpoolctl python3-toml python3-typeguard
python3-typing-extensions python3-wheel python3-zipp python3.12
python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc cython-doc dh-make flit gcc-14-doc gcc-multilib manpages-dev flex
bison gdb gcc-doc gdb-aarch64-linux-gnu libc-devtools glibc-doc
libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
libmail-box-perl python3-doc python3-tk python3-venv python-build-doc
python-installer-doc python-joblib-doc gfortran python-numpy-doc
python-scipy-doc python-setuptools-doc python3-dap python-sklearn-doc
ipython3 python3.12-venv python3.12-doc binfmt-support python3.13-venv
python3.13-doc
Recommended packages:
manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults
python3-simplejson python3-psutil python3-pygments python3-pil
python3-matplotlib
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bc build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dumb-init dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu help2man libasan8 libblas3
libc-dev-bin libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64
libexpat1 libexpat1-dev libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libgfortran5 libhwasan0 libisl23 libitm1 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
liblocale-gettext-perl liblsan0 libmpc3 libmpfr6 libncursesw6 libnsl2
libproc2-0 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.12-dev libpython3.12-minimal libpython3.12-stdlib
libpython3.12t64 libpython3.13 libpython3.13-dev libpython3.13-minimal
libpython3.13-stdlib libsimde-dev libstdc++-14-dev libtirpc-common
libtirpc3t64 libtool libtsan2 libubsan1 linux-libc-dev m4 media-types
po-debconf procps pybuild-plugin-pyproject python3 python3-all
python3-all-dev python3-autocommand python3-build python3-cykhash
python3-decorator python3-dev python3-hmmlearn python3-inflect
python3-iniconfig python3-installer python3-jaraco.context
python3-jaraco.functools python3-jaraco.text python3-joblib python3-minimal
python3-more-itertools python3-numpy python3-packaging python3-pip
python3-pkg-resources python3-pluggy python3-pyproject-hooks python3-pytest
python3-scipy python3-setuptools python3-sklearn python3-sklearn-lib
python3-threadpoolctl python3-toml python3-typeguard
python3-typing-extensions python3-wheel python3-zipp python3.12
python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rpcsvc-proto sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 124 newly installed, 0 to remove and 0 not upgraded.
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Get:15 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB]
Get:16 file:/<<BUILDDIR>>/resolver-tob5bJ/apt_archive ./ python3-numpy 1:1.26.4+ds-11+bootstrap1 [3815 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2 [124 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-1 [671 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 libpython3.13-minimal arm64 3.13.0-1 [849 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 python3.13-minimal arm64 3.13.0-1 [1835 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 procps arm64 2:4.0.4-6 [872 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:33 file:/<<BUILDDIR>>/resolver-tob5bJ/apt_archive ./ python3-scipy 1.13.1-5+nocheck1 [18.1 MB]
Get:34 http://deb.debian.org/debian sid/main arm64 bc arm64 1.07.1-4 [101 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.4-1 [2440 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1 [59.7 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:40 file:/<<BUILDDIR>>/resolver-tob5bJ/apt_archive ./ python3-sklearn-lib 1.4.2+dfsg-6+debusine1 [5386 kB]
Get:41 file:/<<BUILDDIR>>/resolver-tob5bJ/apt_archive ./ python3-hmmlearn 0.3.2-2+bd1 [132 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7 [9164 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-7 [1280 B]
Get:47 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:48 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:49 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-7 [42.2 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-7 [24.2 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-7 [2578 kB]
Get:52 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-7 [1162 kB]
Get:53 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-7 [2386 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-7 [1040 kB]
Get:55 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-7 [1442 kB]
Get:56 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-7 [2365 kB]
Get:57 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB]
Get:58 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB]
Get:59 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:60 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:61 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB]
Get:63 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:65 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:66 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:67 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:72 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:82 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 75.2.0-1 [731 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 help2man arm64 1.49.3 [198 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-7 [361 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b1 [25.0 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:102 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 libsimde-dev all 0.8.2-1 [465 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 python3-packaging all 24.1-1 [45.8 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 python3-pyproject-hooks all 1.1.0-2 [11.3 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 python3-toml all 0.10.2-1 [16.2 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 python3-wheel all 0.44.0-2 [53.4 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 python3-build all 1.2.2-1 [36.0 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 pybuild-plugin-pyproject all 6.20240824 [11.2 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:116 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
Get:117 http://deb.debian.org/debian sid/main arm64 python3-decorator all 5.1.1-5 [15.1 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 python3-joblib all 1.3.2-4 [216 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 python3-threadpoolctl all 3.1.0-1 [21.2 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 python3-sklearn all 1.4.2+dfsg-6 [2248 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get:122 http://deb.debian.org/debian sid/main arm64 python3-pip all 24.2+dfsg-1 [1434 kB]
Get:123 http://deb.debian.org/debian sid/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 python3-pytest all 8.3.3-1 [249 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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Setting up python3-minimal (3.12.6-1+debusine1) ...
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.4-1
Package versions: appstream_1.0.3-1 apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 bc_1.07.1-4 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-aarch64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-1+debusine1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-7 g++-14-aarch64-linux-gnu_14.2.0-7 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-7 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sysvinit-utils_3.11-1 t1utils_1.41-4 tar_1.35+dfsg-3 tzdata_2024b-3 ucf_3.0043+nmu1 unzip_6.0-28 util-linux_2.40.2-9 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: macs
Binary: macs
Architecture: any
Version: 3.0.2-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Michael R. Crusoe <crusoe@debian.org>, Andreas Tille <tille@debian.org>
Homepage: https://github.com/taoliu/MACS/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/macs
Vcs-Git: https://salsa.debian.org/med-team/macs.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, python3-cykhash, python3-hmmlearn, libsimde-dev, cython3, help2man, procps, bc
Package-List:
macs deb science optional arch=any
Checksums-Sha1:
add8dce2a95862e95e94ada63a56f1035023163b 197484503 macs_3.0.2.orig.tar.gz
037228c491ed98c0b9fda258c31e37bf6df33786 1267764 macs_3.0.2-1.debian.tar.xz
Checksums-Sha256:
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73f781c36af39dd8db9d136cc7247a00b43d54f1c1b522f9aaf22a5f5e83b0d1 1267764 macs_3.0.2-1.debian.tar.xz
Files:
2f1ec9ab99edddaf84958b65c305532e 197484503 macs_3.0.2.orig.tar.gz
49878947e75c0f6c36647c4db924eb18 1267764 macs_3.0.2-1.debian.tar.xz
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gpgv: Signature made Sat Sep 7 23:10:03 2024 UTC
gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./macs_3.0.2-1.dsc: no acceptable signature found
dpkg-source: info: extracting macs in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking macs_3.0.2.orig.tar.gz
dpkg-source: info: unpacking macs_3.0.2-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying keep_debug
dpkg-source: info: applying simde.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.0.2-1+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package macs
dpkg-buildpackage: info: source version 3.0.2-1+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
dpkg-source: info: using options from macs-3.0.2/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
debian/rules clean
dh clean --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -Rf test/macs3.0.2-1+bd1* test/speedtest*
rm -f debian/*.1 debian/*-man-include
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
for pyx in $(find MACS3/ -name "*.pyx"); do \
rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done
dh_auto_build
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_MACS3
* Building wheel...
Compiling MACS3/Signal/HMMR_EM.pyx because it changed.
Compiling MACS3/Signal/HMMR_Signal_Processing.pyx because it changed.
Compiling MACS3/Signal/HMMR_HMM.pyx because it changed.
Compiling MACS3/Signal/Prob.pyx because it changed.
Compiling MACS3/Signal/Region.pyx because it changed.
Compiling MACS3/Signal/Pileup.pyx because it changed.
Compiling MACS3/Signal/PileupV2.pyx because it changed.
Compiling MACS3/Signal/PeakModel.pyx because it changed.
Compiling MACS3/Signal/PeakDetect.pyx because it changed.
Compiling MACS3/Signal/SignalProcessing.pyx because it changed.
Compiling MACS3/Signal/FixWidthTrack.pyx because it changed.
Compiling MACS3/Signal/PairedEndTrack.pyx because it changed.
Compiling MACS3/Signal/BedGraph.pyx because it changed.
Compiling MACS3/Signal/ScoreTrack.pyx because it changed.
Compiling MACS3/Signal/CallPeakUnit.pyx because it changed.
Compiling MACS3/Signal/VariantStat.pyx because it changed.
Compiling MACS3/Signal/ReadAlignment.pyx because it changed.
Compiling MACS3/Signal/RACollection.pyx because it changed.
Compiling MACS3/Signal/UnitigRACollection.pyx because it changed.
Compiling MACS3/Signal/PosReadsInfo.pyx because it changed.
Compiling MACS3/Signal/PeakVariants.pyx because it changed.
Compiling MACS3/IO/Parser.pyx because it changed.
Compiling MACS3/IO/PeakIO.pyx because it changed.
Compiling MACS3/IO/BedGraphIO.pyx because it changed.
Compiling MACS3/IO/BAM.pyx because it changed.
[ 1/25] Cythonizing MACS3/IO/BAM.pyx
[ 2/25] Cythonizing MACS3/IO/BedGraphIO.pyx
[ 3/25] Cythonizing MACS3/IO/Parser.pyx
[ 4/25] Cythonizing MACS3/IO/PeakIO.pyx
[ 5/25] Cythonizing MACS3/Signal/BedGraph.pyx
[ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.pyx
[ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.pyx
[ 8/25] Cythonizing MACS3/Signal/HMMR_EM.pyx
[ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.pyx
[10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.pyx
[11/25] Cythonizing MACS3/Signal/PairedEndTrack.pyx
[12/25] Cythonizing MACS3/Signal/PeakDetect.pyx
[13/25] Cythonizing MACS3/Signal/PeakModel.pyx
[14/25] Cythonizing MACS3/Signal/PeakVariants.pyx
[15/25] Cythonizing MACS3/Signal/Pileup.pyx
[16/25] Cythonizing MACS3/Signal/PileupV2.pyx
[17/25] Cythonizing MACS3/Signal/PosReadsInfo.pyx
[18/25] Cythonizing MACS3/Signal/Prob.pyx
[19/25] Cythonizing MACS3/Signal/RACollection.pyx
[20/25] Cythonizing MACS3/Signal/ReadAlignment.pyx
[21/25] Cythonizing MACS3/Signal/Region.pyx
[22/25] Cythonizing MACS3/Signal/ScoreTrack.pyx
[23/25] Cythonizing MACS3/Signal/SignalProcessing.pyx
[24/25] Cythonizing MACS3/Signal/UnitigRACollection.pyx
[25/25] Cythonizing MACS3/Signal/VariantStat.pyx
running bdist_wheel
running build
running build_py
creating build/lib.linux-aarch64-cpython-313/MACS3
copying MACS3/__init__.py -> build/lib.linux-aarch64-cpython-313/MACS3
creating build/lib.linux-aarch64-cpython-313/MACS3/IO
copying MACS3/IO/__init__.py -> build/lib.linux-aarch64-cpython-313/MACS3/IO
copying MACS3/IO/OutputWriter.py -> build/lib.linux-aarch64-cpython-313/MACS3/IO
creating build/lib.linux-aarch64-cpython-313/MACS3/Signal
copying MACS3/Signal/__init__.py -> build/lib.linux-aarch64-cpython-313/MACS3/Signal
creating build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/__init__.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-aarch64-cpython-313/MACS3/Commands
creating build/lib.linux-aarch64-cpython-313/MACS3/Utilities
copying MACS3/Utilities/Constants.py -> build/lib.linux-aarch64-cpython-313/MACS3/Utilities
copying MACS3/Utilities/__init__.py -> build/lib.linux-aarch64-cpython-313/MACS3/Utilities
copying MACS3/Utilities/OptValidator.py -> build/lib.linux-aarch64-cpython-313/MACS3/Utilities
copying MACS3/Utilities/Logger.py -> build/lib.linux-aarch64-cpython-313/MACS3/Utilities
running build_ext
building 'MACS3.Signal.HMMR_EM' extension
creating build/temp.linux-aarch64-cpython-313/MACS3/Signal
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/HMMR_EM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/HMMR_EM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.HMMR_Signal_Processing' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.HMMR_HMM' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/HMMR_HMM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/HMMR_HMM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.Prob' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/Prob.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/Prob.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/Prob.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/Prob.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.Region' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/Region.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/Region.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/Region.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/Region.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.Pileup' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/Pileup.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/Pileup.o -w -O3
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/cPosValCalculation.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/Pileup.o build/temp.linux-aarch64-cpython-313/MACS3/Signal/cPosValCalculation.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/Pileup.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.PileupV2' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/PileupV2.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/PileupV2.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/PileupV2.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/PileupV2.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakModel' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/PeakModel.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/PeakModel.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/PeakModel.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/PeakModel.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakDetect' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/PeakDetect.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/PeakDetect.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.SignalProcessing' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/SignalProcessing.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/SignalProcessing.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.FixWidthTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/FixWidthTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/FixWidthTrack.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.PairedEndTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/PairedEndTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/PairedEndTrack.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.BedGraph' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/BedGraph.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/BedGraph.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/BedGraph.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/BedGraph.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.ScoreTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/ScoreTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/ScoreTrack.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.CallPeakUnit' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/CallPeakUnit.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/CallPeakUnit.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.VariantStat' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/VariantStat.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/VariantStat.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/VariantStat.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/VariantStat.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.ReadAlignment' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/ReadAlignment.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/ReadAlignment.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.RACollection' extension
creating build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/RACollection.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/Signal/swalign.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/htab.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mag.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/misc.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rle.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/rope.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.13 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/RACollection.o build/temp.linux-aarch64-cpython-313/MACS3/Signal/swalign.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/bfc.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/bseq.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/bubble.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/htab.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/ksw.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/kthread.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/mag.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/misc.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/mrope.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/rld0.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/rle.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/rope.o build/temp.linux-aarch64-cpython-313/MACS3/fermi-lite/unitig.o -L/usr/lib/aarch64-linux-gnu -lm -lz -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/RACollection.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.UnitigRACollection' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/UnitigRACollection.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/UnitigRACollection.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.PosReadsInfo' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/PosReadsInfo.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/PosReadsInfo.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakVariants' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-aarch64-cpython-313/MACS3/Signal/PeakVariants.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/Signal/PeakVariants.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-aarch64-linux-gnu.so
building 'MACS3.IO.Parser' extension
creating build/temp.linux-aarch64-cpython-313/MACS3/IO
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/IO/Parser.c -o build/temp.linux-aarch64-cpython-313/MACS3/IO/Parser.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/IO/Parser.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/IO/Parser.cpython-313-aarch64-linux-gnu.so
building 'MACS3.IO.PeakIO' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/PeakIO.c -o build/temp.linux-aarch64-cpython-313/MACS3/IO/PeakIO.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/IO/PeakIO.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/IO/PeakIO.cpython-313-aarch64-linux-gnu.so
building 'MACS3.IO.BedGraphIO' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-aarch64-cpython-313/MACS3/IO/BedGraphIO.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/IO/BedGraphIO.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-aarch64-linux-gnu.so
building 'MACS3.IO.BAM' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c MACS3/IO/BAM.c -o build/temp.linux-aarch64-cpython-313/MACS3/IO/BAM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/MACS3/IO/BAM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-313/MACS3/IO/BAM.cpython-313-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.13
copying and adjusting bin/macs3 -> build/scripts-3.13
changing mode of build/scripts-3.13/macs3 from 644 to 755
installing to build/bdist.linux-aarch64/wheel
running install
running install_lib
creating build/bdist.linux-aarch64/wheel
creating build/bdist.linux-aarch64/wheel/MACS3
creating build/bdist.linux-aarch64/wheel/MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/IO/PeakIO.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/IO/BAM.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/IO/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/IO/Parser.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/IO/OutputWriter.py -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/IO/BedGraphIO.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-313/MACS3/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3
creating build/bdist.linux-aarch64/wheel/MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/BedGraph.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/HMMR_EM.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/Region.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/ScoreTrack.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/CallPeakUnit.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/SignalProcessing.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/PileupV2.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/RACollection.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/PeakDetect.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/UnitigRACollection.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/Prob.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/PairedEndTrack.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/PosReadsInfo.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/VariantStat.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/ReadAlignment.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/PeakVariants.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/FixWidthTrack.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/PeakModel.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/HMMR_HMM.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/Pileup.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
creating build/bdist.linux-aarch64/wheel/MACS3/Utilities
copying build/lib.linux-aarch64-cpython-313/MACS3/Utilities/Constants.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-313/MACS3/Utilities/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-313/MACS3/Utilities/OptValidator.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-313/MACS3/Utilities/Logger.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
creating build/bdist.linux-aarch64/wheel/MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-313/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
running install_egg_info
running egg_info
creating MACS3.egg-info
writing MACS3.egg-info/PKG-INFO
writing dependency_links to MACS3.egg-info/dependency_links.txt
writing requirements to MACS3.egg-info/requires.txt
writing top-level names to MACS3.egg-info/top_level.txt
writing manifest file 'MACS3.egg-info/SOURCES.txt'
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
reading manifest file 'MACS3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'make_docker_base.sh'
warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'MACS3.egg-info/SOURCES.txt'
Copying MACS3.egg-info to build/bdist.linux-aarch64/wheel/./MACS3-3.0.2.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts
copying build/scripts-3.13/macs3 -> build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts
changing mode of build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts/macs3 to 755
creating build/bdist.linux-aarch64/wheel/MACS3-3.0.2.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_MACS3/.tmp-w8xubryi/MACS3-3.0.2-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'MACS3/__init__.py'
adding 'MACS3/Commands/__init__.py'
adding 'MACS3/Commands/bdgbroadcall_cmd.py'
adding 'MACS3/Commands/bdgcmp_cmd.py'
adding 'MACS3/Commands/bdgdiff_cmd.py'
adding 'MACS3/Commands/bdgopt_cmd.py'
adding 'MACS3/Commands/bdgpeakcall_cmd.py'
adding 'MACS3/Commands/callpeak_cmd.py'
adding 'MACS3/Commands/callvar_cmd.py'
adding 'MACS3/Commands/cmbreps_cmd.py'
adding 'MACS3/Commands/diffpeak_cmd.py'
adding 'MACS3/Commands/filterdup_cmd.py'
adding 'MACS3/Commands/hmmratac_cmd.py'
adding 'MACS3/Commands/pileup_cmd.py'
adding 'MACS3/Commands/predictd_cmd.py'
adding 'MACS3/Commands/randsample_cmd.py'
adding 'MACS3/Commands/refinepeak_cmd.py'
adding 'MACS3/IO/BAM.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/IO/BedGraphIO.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/IO/OutputWriter.py'
adding 'MACS3/IO/Parser.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/IO/PeakIO.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/IO/__init__.py'
adding 'MACS3/Signal/BedGraph.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/CallPeakUnit.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/FixWidthTrack.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_EM.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_HMM.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PairedEndTrack.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakDetect.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakModel.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakVariants.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Pileup.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PileupV2.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PosReadsInfo.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Prob.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/RACollection.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/ReadAlignment.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Region.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/ScoreTrack.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/SignalProcessing.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/UnitigRACollection.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/VariantStat.cpython-313-aarch64-linux-gnu.so'
adding 'MACS3/Signal/__init__.py'
adding 'MACS3/Utilities/Constants.py'
adding 'MACS3/Utilities/Logger.py'
adding 'MACS3/Utilities/OptValidator.py'
adding 'MACS3/Utilities/__init__.py'
adding 'MACS3-3.0.2.data/scripts/macs3'
adding 'MACS3-3.0.2.dist-info/LICENSE'
adding 'MACS3-3.0.2.dist-info/METADATA'
adding 'MACS3-3.0.2.dist-info/WHEEL'
adding 'MACS3-3.0.2.dist-info/top_level.txt'
adding 'MACS3-3.0.2.dist-info/RECORD'
removing build/bdist.linux-aarch64/wheel
Successfully built MACS3-3.0.2-cp313-cp313-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build" module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3
* Building wheel...
running bdist_wheel
running build
running build_py
creating build/lib.linux-aarch64-cpython-312/MACS3
copying MACS3/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3
creating build/lib.linux-aarch64-cpython-312/MACS3/IO
copying MACS3/IO/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3/IO
copying MACS3/IO/OutputWriter.py -> build/lib.linux-aarch64-cpython-312/MACS3/IO
creating build/lib.linux-aarch64-cpython-312/MACS3/Signal
copying MACS3/Signal/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3/Signal
creating build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-aarch64-cpython-312/MACS3/Commands
creating build/lib.linux-aarch64-cpython-312/MACS3/Utilities
copying MACS3/Utilities/Constants.py -> build/lib.linux-aarch64-cpython-312/MACS3/Utilities
copying MACS3/Utilities/__init__.py -> build/lib.linux-aarch64-cpython-312/MACS3/Utilities
copying MACS3/Utilities/OptValidator.py -> build/lib.linux-aarch64-cpython-312/MACS3/Utilities
copying MACS3/Utilities/Logger.py -> build/lib.linux-aarch64-cpython-312/MACS3/Utilities
running build_ext
building 'MACS3.Signal.HMMR_EM' extension
creating build/temp.linux-aarch64-cpython-312/MACS3/Signal
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/HMMR_EM.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_EM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_EM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_EM.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.HMMR_Signal_Processing' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.HMMR_HMM' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/HMMR_HMM.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_HMM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/HMMR_HMM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_HMM.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.Prob' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/Prob.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/Prob.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/Prob.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/Prob.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.Region' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/Region.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/Region.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/Region.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/Region.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.Pileup' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/Pileup.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/Pileup.o -w -O3
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/cPosValCalculation.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/cPosValCalculation.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/Pileup.o build/temp.linux-aarch64-cpython-312/MACS3/Signal/cPosValCalculation.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/Pileup.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PileupV2' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PileupV2.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PileupV2.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PileupV2.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PileupV2.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakModel' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PeakModel.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakModel.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakModel.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakModel.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakDetect' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c MACS3/Signal/PeakDetect.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakDetect.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakDetect.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakDetect.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.SignalProcessing' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/SignalProcessing.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/SignalProcessing.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/SignalProcessing.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/SignalProcessing.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.FixWidthTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/FixWidthTrack.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/FixWidthTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/FixWidthTrack.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/FixWidthTrack.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PairedEndTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PairedEndTrack.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PairedEndTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PairedEndTrack.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PairedEndTrack.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.BedGraph' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/BedGraph.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/BedGraph.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/BedGraph.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/BedGraph.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.ScoreTrack' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/ScoreTrack.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/ScoreTrack.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/ScoreTrack.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/ScoreTrack.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.CallPeakUnit' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/CallPeakUnit.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/CallPeakUnit.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/CallPeakUnit.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/CallPeakUnit.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.VariantStat' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/VariantStat.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/VariantStat.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/VariantStat.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/VariantStat.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.ReadAlignment' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/ReadAlignment.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/ReadAlignment.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/ReadAlignment.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/ReadAlignment.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.RACollection' extension
creating build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/Signal/RACollection.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/RACollection.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/Signal/swalign.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/swalign.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/bfc.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bfc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/bseq.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bseq.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/bubble.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bubble.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/htab.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/htab.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/ksw.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/ksw.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/kthread.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/kthread.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/mag.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/mag.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/misc.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/misc.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/mrope.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/mrope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/rld0.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rld0.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/rle.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rle.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/rope.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rope.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS3/Signal -I/usr/lib/python3/dist-packages/numpy/core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/include/python3.12 -c MACS3/fermi-lite/unitig.c -o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/unitig.o -w -O3 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/RACollection.o build/temp.linux-aarch64-cpython-312/MACS3/Signal/swalign.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bfc.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bseq.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/bubble.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/htab.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/ksw.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/kthread.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/mag.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/misc.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/mrope.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rld0.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rle.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/rope.o build/temp.linux-aarch64-cpython-312/MACS3/fermi-lite/unitig.o -L/usr/lib/aarch64-linux-gnu -lm -lz -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/RACollection.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.UnitigRACollection' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/UnitigRACollection.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/UnitigRACollection.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/UnitigRACollection.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/UnitigRACollection.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PosReadsInfo' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PosReadsInfo.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PosReadsInfo.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PosReadsInfo.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PosReadsInfo.cpython-312-aarch64-linux-gnu.so
building 'MACS3.Signal.PeakVariants' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/Signal/PeakVariants.c -o build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakVariants.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/Signal/PeakVariants.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakVariants.cpython-312-aarch64-linux-gnu.so
building 'MACS3.IO.Parser' extension
creating build/temp.linux-aarch64-cpython-312/MACS3/IO
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/IO/Parser.c -o build/temp.linux-aarch64-cpython-312/MACS3/IO/Parser.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/IO/Parser.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/IO/Parser.cpython-312-aarch64-linux-gnu.so
building 'MACS3.IO.PeakIO' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c MACS3/IO/PeakIO.c -o build/temp.linux-aarch64-cpython-312/MACS3/IO/PeakIO.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/IO/PeakIO.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/IO/PeakIO.cpython-312-aarch64-linux-gnu.so
building 'MACS3.IO.BedGraphIO' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c MACS3/IO/BedGraphIO.c -o build/temp.linux-aarch64-cpython-312/MACS3/IO/BedGraphIO.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/IO/BedGraphIO.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-312/MACS3/IO/BedGraphIO.cpython-312-aarch64-linux-gnu.so
building 'MACS3.IO.BAM' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c MACS3/IO/BAM.c -o build/temp.linux-aarch64-cpython-312/MACS3/IO/BAM.o -w -O3
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/MACS3/IO/BAM.o -L/usr/lib/aarch64-linux-gnu -lm -o build/lib.linux-aarch64-cpython-312/MACS3/IO/BAM.cpython-312-aarch64-linux-gnu.so
running build_scripts
creating build/scripts-3.12
copying and adjusting bin/macs3 -> build/scripts-3.12
changing mode of build/scripts-3.12/macs3 from 644 to 755
installing to build/bdist.linux-aarch64/wheel
running install
running install_lib
creating build/bdist.linux-aarch64/wheel
creating build/bdist.linux-aarch64/wheel/MACS3
creating build/bdist.linux-aarch64/wheel/MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/BAM.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/PeakIO.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/OutputWriter.py -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/Parser.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/IO/BedGraphIO.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/IO
copying build/lib.linux-aarch64-cpython-312/MACS3/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3
creating build/bdist.linux-aarch64/wheel/MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_HMM.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_Signal_Processing.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/SignalProcessing.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/ReadAlignment.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/BedGraph.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/UnitigRACollection.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PosReadsInfo.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/HMMR_EM.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/ScoreTrack.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PileupV2.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakVariants.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakModel.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/CallPeakUnit.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/VariantStat.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PeakDetect.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/Region.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/Prob.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/RACollection.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/FixWidthTrack.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/Pileup.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
copying build/lib.linux-aarch64-cpython-312/MACS3/Signal/PairedEndTrack.cpython-312-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./MACS3/Signal
creating build/bdist.linux-aarch64/wheel/MACS3/Utilities
copying build/lib.linux-aarch64-cpython-312/MACS3/Utilities/Constants.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-312/MACS3/Utilities/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-312/MACS3/Utilities/OptValidator.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
copying build/lib.linux-aarch64-cpython-312/MACS3/Utilities/Logger.py -> build/bdist.linux-aarch64/wheel/./MACS3/Utilities
creating build/bdist.linux-aarch64/wheel/MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/__init__.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
copying build/lib.linux-aarch64-cpython-312/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-aarch64/wheel/./MACS3/Commands
running install_egg_info
running egg_info
writing MACS3.egg-info/PKG-INFO
writing dependency_links to MACS3.egg-info/dependency_links.txt
writing requirements to MACS3.egg-info/requires.txt
writing top-level names to MACS3.egg-info/top_level.txt
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/lib/python3/dist-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
reading manifest file 'MACS3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'make_docker_base.sh'
warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'MACS3.egg-info/SOURCES.txt'
Copying MACS3.egg-info to build/bdist.linux-aarch64/wheel/./MACS3-3.0.2.egg-info
running install_scripts
creating build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts
copying build/scripts-3.12/macs3 -> build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts
changing mode of build/bdist.linux-aarch64/wheel/MACS3-3.0.2.data/scripts/macs3 to 755
creating build/bdist.linux-aarch64/wheel/MACS3-3.0.2.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3/.tmp-il6kxaf_/MACS3-3.0.2-cp312-cp312-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it
adding 'MACS3/__init__.py'
adding 'MACS3/Commands/__init__.py'
adding 'MACS3/Commands/bdgbroadcall_cmd.py'
adding 'MACS3/Commands/bdgcmp_cmd.py'
adding 'MACS3/Commands/bdgdiff_cmd.py'
adding 'MACS3/Commands/bdgopt_cmd.py'
adding 'MACS3/Commands/bdgpeakcall_cmd.py'
adding 'MACS3/Commands/callpeak_cmd.py'
adding 'MACS3/Commands/callvar_cmd.py'
adding 'MACS3/Commands/cmbreps_cmd.py'
adding 'MACS3/Commands/diffpeak_cmd.py'
adding 'MACS3/Commands/filterdup_cmd.py'
adding 'MACS3/Commands/hmmratac_cmd.py'
adding 'MACS3/Commands/pileup_cmd.py'
adding 'MACS3/Commands/predictd_cmd.py'
adding 'MACS3/Commands/randsample_cmd.py'
adding 'MACS3/Commands/refinepeak_cmd.py'
adding 'MACS3/IO/BAM.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/IO/BedGraphIO.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/IO/OutputWriter.py'
adding 'MACS3/IO/Parser.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/IO/PeakIO.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/IO/__init__.py'
adding 'MACS3/Signal/BedGraph.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/CallPeakUnit.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/FixWidthTrack.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_EM.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_HMM.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/HMMR_Signal_Processing.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PairedEndTrack.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakDetect.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakModel.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PeakVariants.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Pileup.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PileupV2.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/PosReadsInfo.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Prob.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/RACollection.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/ReadAlignment.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/Region.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/ScoreTrack.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/SignalProcessing.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/UnitigRACollection.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/VariantStat.cpython-312-aarch64-linux-gnu.so'
adding 'MACS3/Signal/__init__.py'
adding 'MACS3/Utilities/Constants.py'
adding 'MACS3/Utilities/Logger.py'
adding 'MACS3/Utilities/OptValidator.py'
adding 'MACS3/Utilities/__init__.py'
adding 'MACS3-3.0.2.data/scripts/macs3'
adding 'MACS3-3.0.2.dist-info/LICENSE'
adding 'MACS3-3.0.2.dist-info/METADATA'
adding 'MACS3-3.0.2.dist-info/WHEEL'
adding 'MACS3-3.0.2.dist-info/top_level.txt'
adding 'MACS3-3.0.2.dist-info/RECORD'
removing build/bdist.linux-aarch64/wheel
Successfully built MACS3-3.0.2-cp312-cp312-linux_aarch64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.12 with "installer" module
PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \
--no-discard-stderr --no-info \
--name "macs3 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs3" > debian/macs3.1
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \
"[NAME]\nmac3_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \
> debian/macs3_${subcommand}-man-include; done
for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \
PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS3/build/ help2man \
--no-discard-stderr --no-info --version-string="3.0.2" \
--include debian/macs3_${subcommand}-man-include \
"python3 bin/macs3 ${subcommand}" > \
debian/macs3_${subcommand}.1; done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_MACS3/build; python3.13 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_MACS3/build
configfile: pyproject.toml
plugins: typeguard-4.3.0
collected 68 items
test/test_BAMBAI.py ........... [ 16%]
test/test_BedGraph.py ... [ 20%]
test/test_FixWidthTrack.py .... [ 26%]
test/test_HMMR_HMM.py ss [ 29%]
test/test_HMMR_poisson.py .. [ 32%]
test/test_PairedEndTrack.py .... [ 38%]
test/test_Parser.py ... [ 42%]
test/test_PeakIO.py . [ 44%]
test/test_Pileup.py .......... [ 58%]
test/test_Prob.py ................ [ 82%]
test/test_Region.py ..... [ 89%]
test/test_ScoreTrack.py .... [ 95%]
test/test_SignalProcessing.py s. [ 98%]
test/test_online.py . [100%]
======================== 65 passed, 3 skipped in 6.91s =========================
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3/build; python3.12 -m pytest test
============================= test session starts ==============================
platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_MACS3/build
configfile: pyproject.toml
plugins: typeguard-4.3.0
collected 68 items
test/test_BAMBAI.py ........... [ 16%]
test/test_BedGraph.py ... [ 20%]
test/test_FixWidthTrack.py .... [ 26%]
test/test_HMMR_HMM.py ss [ 29%]
test/test_HMMR_poisson.py .. [ 32%]
test/test_PairedEndTrack.py .... [ 38%]
test/test_Parser.py ... [ 42%]
test/test_PeakIO.py . [ 44%]
test/test_Pileup.py .......... [ 58%]
test/test_Prob.py ................ [ 82%]
test/test_Region.py ..... [ 89%]
test/test_ScoreTrack.py .... [ 95%]
test/test_SignalProcessing.py s. [ 98%]
test/test_online.py . [100%]
======================== 65 passed, 3 skipped in 6.97s =========================
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/macs/ -a -O--buildsystem=pybuild
I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir
I: pybuild plugin_pyproject:178: Copying package built for python3.12 to destdir
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
debian/rules execute_before_dh_python3
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_numpy3
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'macs' in '../macs_3.0.2-1+bd1_arm64.deb'.
dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_3.0.2-1+bd1_arm64.deb'.
dpkg-genbuildinfo --build=any -O../macs_3.0.2-1+bd1_arm64.buildinfo
dpkg-genchanges --build=any -mDebusine Rebuild <debusine@example.net> -O../macs_3.0.2-1+bd1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from macs-3.0.2/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-10-24T18:25:25Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
macs_3.0.2-1+bd1_arm64.changes:
-------------------------------
Format: 1.8
Date: Thu, 24 Oct 2024 18:14:30 +0000
Source: macs (3.0.2-1)
Binary: macs macs-dbgsym
Binary-Only: yes
Architecture: arm64
Version: 3.0.2-1+bd1
Distribution: sid
Urgency: low
Maintainer: Debusine Rebuild <debusine@example.net>
Changed-By: Debusine Rebuild <debusine@example.net>
Description:
macs - Model-based Analysis of ChIP-Seq on short reads sequencers
Changes:
macs (3.0.2-1+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
Checksums-Sha1:
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6fc953d14e4c8b3525006ea494bec6caeffcc5ee 7951 macs_3.0.2-1+bd1_arm64.buildinfo
32476449bc42cd6fcfcb05ba1127b1d563fa103a 3601284 macs_3.0.2-1+bd1_arm64.deb
Checksums-Sha256:
039d554a83e515bd7494b44ccea6664108e462287a0abb1cf4c1d1c04cca71e2 24101400 macs-dbgsym_3.0.2-1+bd1_arm64.deb
fab5d5e540f22d833cd84f039878180ce5784e4421de9cdcaeda4c47451a8bc5 7951 macs_3.0.2-1+bd1_arm64.buildinfo
78a0c6e6351b733a8f43fe578ec7e7da54ee2451f23374a12af4f4e286af33a3 3601284 macs_3.0.2-1+bd1_arm64.deb
Files:
79c77f0f51fef05f30ba9bdd3df2f7ae 24101400 debug optional macs-dbgsym_3.0.2-1+bd1_arm64.deb
e737ff2969b4e5e016250cb0f7110276 7951 science optional macs_3.0.2-1+bd1_arm64.buildinfo
99471ddce5608250eb87d1dbbe968413 3601284 science optional macs_3.0.2-1+bd1_arm64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: macs (3.0.2-1)
Binary: macs macs-dbgsym
Architecture: arm64
Version: 3.0.2-1+bd1
Binary-Only-Changes:
macs (3.0.2-1+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
.
-- Debusine Rebuild <debusine@example.net> Thu, 24 Oct 2024 18:14:30 +0000
Checksums-Md5:
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99471ddce5608250eb87d1dbbe968413 3601284 macs_3.0.2-1+bd1_arm64.deb
Checksums-Sha1:
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Checksums-Sha256:
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78a0c6e6351b733a8f43fe578ec7e7da54ee2451f23374a12af4f4e286af33a3 3601284 macs_3.0.2-1+bd1_arm64.deb
Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Thu, 24 Oct 2024 18:25:24 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.5),
bash (= 5.2.32-1+b2),
bc (= 1.07.1-4),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-9),
bsdutils (= 1:2.40.2-9),
build-essential (= 12.12),
bzip2 (= 1.0.8-6),
ca-certificates (= 20240203),
coreutils (= 9.5-1),
cpp (= 4:14.2.0-1),
cpp-14 (= 14.2.0-7),
cpp-14-aarch64-linux-gnu (= 14.2.0-7),
cpp-aarch64-linux-gnu (= 4:14.2.0-1),
cython3 (= 3.0.11+dfsg-1+debusine1),
dash (= 0.5.12-9),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.20),
dh-autoreconf (= 20),
dh-python (= 6.20240824),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.11),
dpkg-dev (= 1.22.11),
dwz (= 0.15-1+b1),
file (= 1:5.45-3),
findutils (= 4.10.0-3),
g++ (= 4:14.2.0-1),
g++-14 (= 14.2.0-7),
g++-14-aarch64-linux-gnu (= 14.2.0-7),
g++-aarch64-linux-gnu (= 4:14.2.0-1),
gcc (= 4:14.2.0-1),
gcc-14 (= 14.2.0-7),
gcc-14-aarch64-linux-gnu (= 14.2.0-7),
gcc-14-base (= 14.2.0-7),
gcc-aarch64-linux-gnu (= 4:14.2.0-1),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1),
help2man (= 1.49.3),
hostname (= 3.25),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-7),
libatomic1 (= 14.2.0-7),
libattr1 (= 1:2.5.2-2),
libaudit-common (= 1:4.0.1-1),
libaudit1 (= 1:4.0.1-1),
libbinutils (= 2.43.1-5),
libblas3 (= 3.12.0-3),
libblkid1 (= 2.40.2-9),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-3),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14.2.0-7),
libcom-err2 (= 1.47.1-1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdebconfclient0 (= 0.272),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.11),
libelf1t64 (= 0.192-4),
libexpat1 (= 2.6.3-1),
libexpat1-dev (= 2.6.3-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-7),
libgcc-s1 (= 14.2.0-7),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgfortran5 (= 14.2.0-7),
libgmp10 (= 2:6.3.0+dfsg-2+b1),
libgomp1 (= 14.2.0-7),
libgprofng0 (= 2.43.1-5),
libgssapi-krb5-2 (= 1.21.3-3),
libhwasan0 (= 14.2.0-7),
libicu72 (= 72.1-5),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-7),
libjansson4 (= 2.14-2+b2),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-sphinxdoc (= 7.4.7-3),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
libk5crypto3 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-4),
libkrb5-3 (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
liblapack3 (= 3.12.0-3),
liblbfgsb0 (= 3.0+dfsg.4-1+b1),
liblocale-gettext-perl (= 1.07-7+b1),
liblsan0 (= 14.2.0-7),
liblzma5 (= 5.6.2-2),
libmagic-mgc (= 1:5.45-3),
libmagic1t64 (= 1:5.45-3),
libmd0 (= 1.1.0-2),
libmount1 (= 2.40.2-9),
libmpc3 (= 1.3.1-1+b2),
libmpfr6 (= 4.2.1-1+b1),
libncursesw6 (= 6.5-2),
libnsl2 (= 1.3.0-3+b2),
libpam-modules (= 1.5.3-7),
libpam-modules-bin (= 1.5.3-7),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7),
libpcre2-8-0 (= 10.42-4+b1),
libperl5.40 (= 5.40.0-6),
libpipeline1 (= 1.5.8-1),
libproc2-0 (= 2:4.0.4-6),
libpython3-all-dev (= 3.12.6-1+debusine1),
libpython3-dev (= 3.12.6-1+debusine1),
libpython3-stdlib (= 3.12.6-1+debusine1),
libpython3.12-dev (= 3.12.7-1),
libpython3.12-minimal (= 3.12.7-1),
libpython3.12-stdlib (= 3.12.7-1),
libpython3.12t64 (= 3.12.7-1),
libpython3.13 (= 3.13.0-1),
libpython3.13-dev (= 3.13.0-1),
libpython3.13-minimal (= 3.13.0-1),
libpython3.13-stdlib (= 3.13.0-1),
libreadline8t64 (= 8.2-5),
libseccomp2 (= 2.5.5-1+b1),
libselinux1 (= 3.7-3),
libsframe1 (= 2.43.1-5),
libsimde-dev (= 0.8.2-1),
libsmartcols1 (= 2.40.2-9),
libsqlite3-0 (= 3.46.1-1),
libssl3t64 (= 3.3.2-1),
libstdc++-14-dev (= 14.2.0-7),
libstdc++6 (= 14.2.0-7),
libsystemd0 (= 256.7-2),
libtinfo6 (= 6.5-2),
libtirpc-common (= 1.3.4+ds-1.3),
libtirpc3t64 (= 1.3.4+ds-1.3),
libtool (= 2.4.7-7),
libtsan2 (= 14.2.0-7),
libubsan1 (= 14.2.0-7),
libuchardet0 (= 0.0.8-1+b1),
libudev1 (= 256.7-2),
libunistring5 (= 1.2-1),
libuuid1 (= 2.40.2-9),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.1),
libzstd1 (= 1.5.6+dfsg-1),
linux-libc-dev (= 6.11.4-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
media-types (= 10.1.0),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2),
netbase (= 6.4),
openssl (= 3.3.2-1),
openssl-provider-legacy (= 3.3.2-1),
patch (= 2.7.6-7),
perl (= 5.40.0-6),
perl-base (= 5.40.0-6),
perl-modules-5.40 (= 5.40.0-6),
po-debconf (= 1.0.21+nmu1),
procps (= 2:4.0.4-6),
pybuild-plugin-pyproject (= 6.20240824),
python3 (= 3.12.6-1+debusine1),
python3-all (= 3.12.6-1+debusine1),
python3-all-dev (= 3.12.6-1+debusine1),
python3-autocommand (= 2.2.2-3),
python3-build (= 1.2.2-1),
python3-cykhash (= 2.0.0-3+bd1),
python3-decorator (= 5.1.1-5),
python3-dev (= 3.12.6-1+debusine1),
python3-hmmlearn (= 0.3.2-2+bd1),
python3-inflect (= 7.3.1-2),
python3-iniconfig (= 1.1.1-2),
python3-installer (= 0.7.0+dfsg1-3),
python3-jaraco.context (= 6.0.0-1),
python3-jaraco.functools (= 4.1.0-1),
python3-jaraco.text (= 4.0.0-1),
python3-joblib (= 1.3.2-4),
python3-minimal (= 3.12.6-1+debusine1),
python3-more-itertools (= 10.5.0-1),
python3-numpy (= 1:1.26.4+ds-11+bootstrap1),
python3-packaging (= 24.1-1),
python3-pip (= 24.2+dfsg-1),
python3-pkg-resources (= 75.2.0-1),
python3-pluggy (= 1.5.0-1),
python3-pyproject-hooks (= 1.1.0-2),
python3-pytest (= 8.3.3-1),
python3-scipy (= 1.13.1-5+nocheck1),
python3-setuptools (= 75.2.0-1),
python3-sklearn (= 1.4.2+dfsg-6),
python3-sklearn-lib (= 1.4.2+dfsg-6+debusine1),
python3-threadpoolctl (= 3.1.0-1),
python3-toml (= 0.10.2-1),
python3-typeguard (= 4.3.0-1),
python3-typing-extensions (= 4.12.2-2),
python3-wheel (= 0.44.0-2),
python3-zipp (= 3.20.2-1),
python3.12 (= 3.12.7-1),
python3.12-dev (= 3.12.7-1),
python3.12-minimal (= 3.12.7-1),
python3.13 (= 3.13.0-1),
python3.13-dev (= 3.13.0-1),
python3.13-minimal (= 3.13.0-1),
readline-common (= 8.2-5),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.11-1),
tar (= 1.35+dfsg-3),
tzdata (= 2024b-3),
util-linux (= 2.40.2-9),
xz-utils (= 5.6.2-2),
zlib1g (= 1:1.3.dfsg+really1.3.1-1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
DEB_BUILD_OPTIONS="parallel=8"
LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1729793670"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
macs-dbgsym_3.0.2-1+bd1_arm64.deb
---------------------------------
new Debian package, version 2.0.
size 24101400 bytes: control archive=2856 bytes.
2387 bytes, 12 lines control
5382 bytes, 51 lines md5sums
Package: macs-dbgsym
Source: macs (3.0.2-1)
Version: 3.0.2-1+bd1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 24988
Depends: macs (= 3.0.2-1+bd1)
Section: debug
Priority: optional
Description: debug symbols for macs
Build-Ids: 012e1b82a5237bb93aa0ac06b377318d1cdcc7b4 1086c045140701311bb619088f11af40c3ac1fb8 10ba6203a6bdc2f60f2a49c9f26d381589fa53d9 14a210664082b176f10ffdcdb5baac3f07f384fc 1b706ac3e7dc378209bcdfa6721933eab261029c 1c5c7580ea6f6406516f85b873d759f6e7f61306 20e40b7b6a7e2e00477957861bbd46dbeb74df09 21993fc862d534adb3a99181857b0892a6afb44e 30c4913fe6b0d44d064ffecaf6d1e3c3947d62d9 3414a88a205cf785494c5c80a777922687c0010e 3472e9f945ef22cc689bd557365c26eddfe31386 3e2f0736d08475ac5704dba9b51c88ca6060ca7c 438e173db025d7c29d9e1738d176a4b16a5252a8 43b8589f7f4f722fa89a57b839664a053e698ff0 43e3a25f59bb6986f562a5f047535c8cb5ae20ca 5a7ac8389ce562b27ffe7f19d27be9b375b8411b 5e210580fb1d9c5176aaf7906a38444ec7c8d5bf 5e3461f6fe393b1cb732b57013c3cd2f79bcf9c5 65b4f36bac2be5295269ef04c1f9655243b52944 67c23a18e3eb9135363ad8d2d9bb5c4ea5ed0425 698d3539372aa72b1789502bf7871aac3c0e7ff4 6b54325d1f07bf5add7c893a7a4698ef60e6ffb0 6ce39d6c747266c1e5c5eef44dfa3e57b1a0cc0d 73231c7dfad47e6ff8fbdc7bacbc53d0264fcedf 75656bb7a289b0cab81d1e0fd95a7403f418429d 775e5fbd23c6cc86738ed01f5247646ddf093e23 7a72db0d10c7d31ac17273ecff31a79ed9d248ba 886e1ba809b273c86e9232e25c3e1ffed114d953 8a4b784b009960329dac811aeed0f3edb1e27826 8a899f12189a5017a01e09757a256460d313fc02 8f9427824a584e6721ffc73d10b0fd892a855866 95e1cfd9a82cad20df016b9f1f9d7daf00f498a8 9db138d94d7e3bf8b7bcaff3c21645f1e0e551ab 9ef8e6bd18136d67217e1bb1f5514160513d6e51 ae0469d974b4557102d46cdd1272f1eaeff445ee afbdfeba17556b0d9d02c9ba6a0baccd6be48570 b9cc9cd438efe245a6ff20607d15c63d0d9ec799 bba79bb82f125ab51d6494127816ac06dfec55bc c78e500443be31c713a71e5e9477b4bd016b95c0 cb7c2ca8cee63a1e808f1f330e1c786a07a41931 cd0d30371632945516b90c7d7214d96ddfaa77fc d12afcc08ce5c522ba8deaaadfac0a7a6e8d2443 d74d0425ad7446b20480c6165cb509d070486c78 d78c2c94587069e5def29f845a97cd57c060fe7f de341b21977bf0e3fa91f80122953970ddcb1de5 dea7722aa6bb7bd10d9b3ee8b823f09061bedc5c e4219ba834b68cbcb35aefcdcf31ee5368ec5044 e7628810fe9ba4f54091aad719905bb84ce99a70 e8cbdb9fcb8d26468ad7fedaab4192fe00bcb284 f87842f3ceda4e75472d8b066f64ba68241927a3
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macs_3.0.2-1+bd1_arm64.deb
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new Debian package, version 2.0.
size 3601284 bytes: control archive=3924 bytes.
1105 bytes, 19 lines control
10341 bytes, 102 lines md5sums
255 bytes, 12 lines * postinst #!/bin/sh
368 bytes, 12 lines * prerm #!/bin/sh
Package: macs
Source: macs (3.0.2-1)
Version: 3.0.2-1+bd1
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 14531
Depends: python3-numpy (>= 1:1.25.0), python3-numpy-abi9, python3 (<< 3.14), python3 (>= 3.12~), python3-cykhash, python3-hmmlearn, python3-scipy, python3-sklearn, python3:any, libc6 (>= 2.38), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/taoliu/MACS/
Description: Model-based Analysis of ChIP-Seq on short reads sequencers
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.
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lintian
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Setup apt archive
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Merged Build-Depends: lintian
Filtered Build-Depends: lintian
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
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Install lintian build dependencies (apt-based resolver)
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sbuild-build-depends-lintian-dummy
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Running lintian...
I: Lintian run was successful.
+------------------------------------------------------------------------------+
| Post Build |
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| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: any
Build-Space: 803176
Build-Time: 655
Distribution: sid
Host Architecture: arm64
Install-Time: 62
Job: /tmp/debusine-fetch-exec-upload-96k2_d8q/macs_3.0.2-1.dsc
Lintian: pass
Machine Architecture: arm64
Package: macs
Package-Time: 768
Source-Version: 3.0.2-1
Space: 803176
Status: successful
Version: 3.0.2-1+bd1
--------------------------------------------------------------------------------
Finished at 2024-10-24T18:25:25Z
Build needed 00:12:48, 803176k disk space