sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-05.freexian.com
+==============================================================================+
| pymol 3.0.0+dfsg-1+bd1 (arm64) Thu, 24 Oct 2024 20:12:12 +0000 |
+==============================================================================+
Package: pymol
Version: 3.0.0+dfsg-1+bd1
Source Version: 3.0.0+dfsg-1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
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Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, freeglut3-dev, libfreetype-dev, libglew-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev, build-essential, fakeroot, dumb-init
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The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-python dh-strip-nondeterminism dumb-init dwz fakeroot fontconfig
fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern
freeglut3-dev g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu hdf5-helpers
icu-devtools libaec-dev libaec0 libasan8 libavahi-client3
libavahi-common-data libavahi-common3 libblas3 libbrotli-dev libbz2-dev
libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcups2t64
libcurl4-gnutls-dev libcurl4t64 libdbus-1-3 libdebhelper-perl
libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-radeon1 libdrm2
libedit2 libegl-dev libegl-mesa0 libegl1 libelf1t64 libevdev2
libevent-2.1-7t64 libexpat1 libexpat1-dev libfakeroot
libfile-stripnondeterminism-perl libfontconfig1 libfreetype-dev libfreetype6
libgbm1 libgcc-14-dev libgfortran5 libgl-dev libgl1 libgl1-mesa-dev
libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglew-dev
libglew2.2 libglm-dev libglu1-mesa libglu1-mesa-dev libglut-dev libglut3.12
libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0
libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64
libgnutls28-dev libgraphite2-3 libgudev-1.0-0 libharfbuzz0b libhdf5-103-1t64
libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64
libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libice-dev
libice6 libicu-dev libidn2-dev libinput-bin libinput10 libisl23 libitm1
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc
libjs-underscore libkpathsea6 liblapack3 libllvm19 liblsan0 liblzma-dev
libmd4c0 libmpc3 libmpfi0 libmpfr6 libmtdev1t64 libncursesw6 libnetcdf-dev
libnetcdf19t64 libnghttp2-dev libnghttp3-dev libngtcp2-crypto-gnutls-dev
libngtcp2-dev libnsl2 libopengl-dev libopengl0 libp11-kit-dev libpaper-utils
libpaper1 libpcre2-16-0 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64
libpotrace0 libpsl-dev libptexenc1 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
libpython3.13-minimal libpython3.13-stdlib libqt5core5t64 libqt5dbus5t64
libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64
libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64
libqt5xml5t64 librtmp-dev libsensors-config libsensors5 libsm-dev libsm6
libssh2-1-dev libssl-dev libstdc++-14-dev libsynctex2 libsz2 libtasn1-6-dev
libteckit0 libtexlua53-5 libtirpc-common libtirpc3t64 libtool libtsan2
libubsan1 libunbound8 libvulkan1 libwacom-common libwacom9
libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-dev
libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0
libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0
libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0
libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0
libxcb-xkb1 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6
libxfixes3 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2-dev libxml2n
libxmu6 libxpm4 libxrender1 libxshmfence1 libxt-dev libxt6t64 libxxf86vm1
libz3-4 libzstd-dev libzzip-0-13t64 linux-libc-dev m4 media-types
mesa-libgallium nettle-dev pkgconf pkgconf-bin po-debconf python3
python3-all python3-all-dev python3-autocommand python3-dev python3-inflect
python3-jaraco.context python3-jaraco.functools python3-jaraco.text
python3-minimal python3-more-itertools python3-numpy python3-opengl
python3-pkg-resources python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip
python3-setuptools python3-typeguard python3-typing-extensions python3-zipp
python3.12 python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rpcsvc-proto tex-common texlive-base texlive-binaries
texlive-latex-base x11-common x11proto-dev xdg-utils xkb-data
xorg-sgml-doctools xtrans-dev zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc dh-make flit python3-build python3-installer python3-wheel
gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
gdb-aarch64-linux-gnu libc-devtools glibc-doc cups-common libcurl4-doc
libidn-dev libkrb5-dev libldap2-dev freetype2-doc glew-utils gmp-doc
libgmp10-doc libmpfr-dev dns-root-data gnutls-bin gnutls-doc libhdf5-doc
libice-doc icu-doc liblzma-doc libmpfi-doc netcdf-bin netcdf-doc
libnghttp2-doc p11-kit-doc libthai0 qgnomeplatform-qt5
qt5-image-formats-plugins lm-sensors libsm-doc libssl-doc libstdc++-14-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk libwacom-bin libx11-doc
libxcb-doc libxext-doc libxt-doc m4-doc libmail-box-perl python3-doc
python3-tk python3-venv gfortran python-numpy-doc python3-pytest libgle3
python-setuptools-doc python3.12-venv python3.12-doc binfmt-support
python3.13-venv python3.13-doc ghostscript gv | postscript-viewer perl-tk
xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview
texlive-latex-base-doc wp2latex
Recommended packages:
bzip2-doc manpages manpages-dev dbus libarchive-cpio-perl javascript-common
libgpm2 libpng-tools qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme
qtwayland5 libqt5sql5-sqlite | libqt5sql5-mysql | libqt5sql5-odbc
| libqt5sql5-psql | libqt5sql5-tds | libqt5sql5-ibase libtasn1-doc
libltdl-dev mesa-vulkan-drivers | vulkan-icd libmail-sendmail-perl lmodern
dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following packages will be REMOVED:
libxml2*
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-python dh-strip-nondeterminism dumb-init dwz fakeroot fontconfig
fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern
freeglut3-dev g++ g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
gcc-14 gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu hdf5-helpers
icu-devtools libaec-dev libaec0 libasan8 libavahi-client3
libavahi-common-data libavahi-common3 libblas3 libbrotli-dev libbz2-dev
libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcups2t64
libcurl4-gnutls-dev libcurl4t64 libdbus-1-3 libdebhelper-perl
libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-radeon1 libdrm2
libedit2 libegl-dev libegl-mesa0 libegl1 libelf1t64 libevdev2
libevent-2.1-7t64 libexpat1 libexpat1-dev libfakeroot
libfile-stripnondeterminism-perl libfontconfig1 libfreetype-dev libfreetype6
libgbm1 libgcc-14-dev libgfortran5 libgl-dev libgl1 libgl1-mesa-dev
libgl1-mesa-dri libglapi-mesa libgles-dev libgles1 libgles2 libglew-dev
libglew2.2 libglm-dev libglu1-mesa libglu1-mesa-dev libglut-dev libglut3.12
libglvnd-core-dev libglvnd-dev libglvnd0 libglx-dev libglx-mesa0 libglx0
libgmp-dev libgmpxx4ldbl libgnutls-dane0t64 libgnutls-openssl27t64
libgnutls28-dev libgraphite2-3 libgudev-1.0-0 libharfbuzz0b libhdf5-103-1t64
libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64
libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 libice-dev
libice6 libicu-dev libidn2-dev libinput-bin libinput10 libisl23 libitm1
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-jquery libjs-sphinxdoc
libjs-underscore libkpathsea6 liblapack3 libllvm19 liblsan0 liblzma-dev
libmd4c0 libmpc3 libmpfi0 libmpfr6 libmtdev1t64 libncursesw6 libnetcdf-dev
libnetcdf19t64 libnghttp2-dev libnghttp3-dev libngtcp2-crypto-gnutls-dev
libngtcp2-dev libnsl2 libopengl-dev libopengl0 libp11-kit-dev libpaper-utils
libpaper1 libpcre2-16-0 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64
libpotrace0 libpsl-dev libptexenc1 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
libpython3.13-minimal libpython3.13-stdlib libqt5core5t64 libqt5dbus5t64
libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64
libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64
libqt5xml5t64 librtmp-dev libsensors-config libsensors5 libsm-dev libsm6
libssh2-1-dev libssl-dev libstdc++-14-dev libsynctex2 libsz2 libtasn1-6-dev
libteckit0 libtexlua53-5 libtirpc-common libtirpc3t64 libtool libtsan2
libubsan1 libunbound8 libvulkan1 libwacom-common libwacom9
libwayland-client0 libwayland-server0 libx11-6 libx11-data libx11-dev
libx11-xcb1 libxau-dev libxau6 libxaw7 libxcb-dri2-0 libxcb-dri3-0
libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0
libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0
libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0
libxcb-xkb1 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6
libxfixes3 libxi6 libxkbcommon-x11-0 libxkbcommon0 libxml2-dev libxml2n
libxmu6 libxpm4 libxrender1 libxshmfence1 libxt-dev libxt6t64 libxxf86vm1
libz3-4 libzstd-dev libzzip-0-13t64 linux-libc-dev m4 media-types
mesa-libgallium nettle-dev pkgconf pkgconf-bin po-debconf python3
python3-all python3-all-dev python3-autocommand python3-dev python3-inflect
python3-jaraco.context python3-jaraco.functools python3-jaraco.text
python3-minimal python3-more-itertools python3-numpy python3-opengl
python3-pkg-resources python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.sip
python3-setuptools python3-typeguard python3-typing-extensions python3-zipp
python3.12 python3.12-dev python3.12-minimal python3.13 python3.13-dev
python3.13-minimal rpcsvc-proto sbuild-build-depends-main-dummy tex-common
texlive-base texlive-binaries texlive-latex-base x11-common x11proto-dev
xdg-utils xkb-data xorg-sgml-doctools xtrans-dev zlib1g-dev
0 upgraded, 297 newly installed, 1 to remove and 0 not upgraded.
Need to get 222 MB/230 MB of archives.
After this operation, 952 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [996 B]
Get:2 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ libxml2n 2.13.3+dfsg-0exp2+bd1 [599 kB]
Get:3 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ python3-minimal 3.12.6-1+debusine1 [26.8 kB]
Get:4 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ libpython3-stdlib 3.12.6-1+debusine1 [9732 B]
Get:5 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ python3 3.12.6-1+debusine1 [27.8 kB]
Get:6 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ libxml2-dev 2.13.3+dfsg-0exp2+bd1 [149 kB]
Get:7 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ libpython3-dev 3.12.6-1+debusine1 [9992 B]
Get:8 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ libpython3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:9 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ python3-all 3.12.6-1+debusine1 [1056 B]
Get:10 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ python3-dev 3.12.6-1+debusine1 [26.1 kB]
Get:11 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ python3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:12 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB]
Get:13 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ python3-numpy 1:1.26.4+ds-11+bootstrap1 [3815 kB]
Get:14 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ python3-pyqt5.sip 12.15.0-1+debusine1 [64.4 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB]
Get:17 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ python3-pyqt5 5.15.11+dfsg-1+debusine1 [2319 kB]
Get:18 file:/<<BUILDDIR>>/resolver-xeJD7d/apt_archive ./ python3-pyqt5.qtopengl 5.15.11+dfsg-1+debusine1 [199 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2 [124 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-1 [671 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 libpython3.13-minimal arm64 3.13.0-1 [849 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 python3.13-minimal arm64 3.13.0-1 [1835 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.4-1 [2440 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1 [59.7 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7 [9164 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-7 [1280 B]
Get:43 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:44 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:45 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-7 [42.2 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-7 [24.2 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-7 [2578 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-7 [1162 kB]
Get:49 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-7 [2386 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-7 [1040 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-7 [1442 kB]
Get:52 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-7 [2365 kB]
Get:53 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB]
Get:54 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB]
Get:55 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:56 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:57 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB]
Get:58 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB]
Get:59 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:61 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:62 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:63 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:68 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:78 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 75.2.0-1 [731 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20240824 [109 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 fontconfig-config arm64 2.15.0-1.1 [317 kB]
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Get:93 http://deb.debian.org/debian sid/main arm64 fontconfig arm64 2.15.0-1.1 [462 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 fonts-lmodern all 2.005-1 [4540 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 libglvnd0 arm64 1.7.0-1+b1 [41.7 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 libxcb1 arm64 1.17.0-2 [143 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 libx11-data all 2:1.8.7-1 [328 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB]
Get:101 http://deb.debian.org/debian sid/main arm64 libdrm-common all 2.4.123-1 [8084 B]
Get:102 http://deb.debian.org/debian sid/main arm64 libdrm2 arm64 2.4.123-1 [38.0 kB]
Get:103 http://deb.debian.org/debian sid/main arm64 libglapi-mesa arm64 24.2.4-1 [48.2 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 libx11-xcb1 arm64 2:1.8.7-1+b1 [232 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 libxcb-dri2-0 arm64 1.17.0-2 [107 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 libxcb-dri3-0 arm64 1.17.0-2 [107 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 libxcb-glx0 arm64 1.17.0-2 [122 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 libxcb-present0 arm64 1.17.0-2 [105 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 libxcb-randr0 arm64 1.17.0-2 [116 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 libxcb-shm0 arm64 1.17.0-2 [105 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 libxcb-sync1 arm64 1.17.0-2 [109 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 libxcb-xfixes0 arm64 1.17.0-2 [109 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB]
Get:114 http://deb.debian.org/debian sid/main arm64 libxfixes3 arm64 1:6.0.0-2+b1 [20.5 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 libxshmfence1 arm64 1.3-1+b1 [9080 B]
Get:116 http://deb.debian.org/debian sid/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b3 [19.2 kB]
Get:117 http://deb.debian.org/debian sid/main arm64 libdrm-amdgpu1 arm64 2.4.123-1 [21.6 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 libdrm-radeon1 arm64 2.4.123-1 [21.3 kB]
Get:119 http://deb.debian.org/debian sid/main arm64 libedit2 arm64 3.1-20240808-1 [89.2 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 libz3-4 arm64 4.8.12-3.1+b2 [6508 kB]
Get:121 http://deb.debian.org/debian sid/main arm64 libllvm19 arm64 1:19.1.2-1 [23.3 MB]
Get:122 http://deb.debian.org/debian sid/main arm64 libsensors-config all 1:3.6.0-10 [14.6 kB]
Get:123 http://deb.debian.org/debian sid/main arm64 libsensors5 arm64 1:3.6.0-10 [34.0 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 mesa-libgallium arm64 24.2.4-1 [7681 kB]
Get:125 http://deb.debian.org/debian sid/main arm64 libvulkan1 arm64 1.3.296.0-1 [123 kB]
Get:126 http://deb.debian.org/debian sid/main arm64 libwayland-server0 arm64 1.23.0-1 [33.1 kB]
Get:127 http://deb.debian.org/debian sid/main arm64 libgbm1 arm64 24.2.4-1 [42.0 kB]
Get:128 http://deb.debian.org/debian sid/main arm64 libgl1-mesa-dri arm64 24.2.4-1 [43.5 kB]
Get:129 http://deb.debian.org/debian sid/main arm64 libglx-mesa0 arm64 24.2.4-1 [152 kB]
Get:130 http://deb.debian.org/debian sid/main arm64 libglx0 arm64 1.7.0-1+b1 [31.0 kB]
Get:131 http://deb.debian.org/debian sid/main arm64 libgl1 arm64 1.7.0-1+b1 [90.9 kB]
Get:132 http://deb.debian.org/debian sid/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB]
Get:133 http://deb.debian.org/debian sid/main arm64 libglut3.12 arm64 3.4.0-1+b1 [133 kB]
Get:134 http://deb.debian.org/debian sid/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:135 http://deb.debian.org/debian sid/main arm64 x11proto-dev all 2024.1-1 [603 kB]
Get:136 http://deb.debian.org/debian sid/main arm64 libxau-dev arm64 1:1.0.9-1+b1 [21.5 kB]
Get:137 http://deb.debian.org/debian sid/main arm64 libxdmcp-dev arm64 1:1.1.2-3+b1 [40.6 kB]
Get:138 http://deb.debian.org/debian sid/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB]
Get:139 http://deb.debian.org/debian sid/main arm64 libxcb1-dev arm64 1.17.0-2 [183 kB]
Get:140 http://deb.debian.org/debian sid/main arm64 libx11-dev arm64 2:1.8.7-1+b1 [861 kB]
Get:141 http://deb.debian.org/debian sid/main arm64 libglx-dev arm64 1.7.0-1+b1 [15.8 kB]
Get:142 http://deb.debian.org/debian sid/main arm64 libgl-dev arm64 1.7.0-1+b1 [101 kB]
Get:143 http://deb.debian.org/debian sid/main arm64 libglvnd-core-dev arm64 1.7.0-1+b1 [13.4 kB]
Get:144 http://deb.debian.org/debian sid/main arm64 libwayland-client0 arm64 1.23.0-1 [25.7 kB]
Get:145 http://deb.debian.org/debian sid/main arm64 libegl-mesa0 arm64 24.2.4-1 [124 kB]
Get:146 http://deb.debian.org/debian sid/main arm64 libegl1 arm64 1.7.0-1+b1 [33.9 kB]
Get:147 http://deb.debian.org/debian sid/main arm64 libegl-dev arm64 1.7.0-1+b1 [19.5 kB]
Get:148 http://deb.debian.org/debian sid/main arm64 libgles1 arm64 1.7.0-1+b1 [12.6 kB]
Get:149 http://deb.debian.org/debian sid/main arm64 libgles2 arm64 1.7.0-1+b1 [17.9 kB]
Get:150 http://deb.debian.org/debian sid/main arm64 libgles-dev arm64 1.7.0-1+b1 [50.8 kB]
Get:151 http://deb.debian.org/debian sid/main arm64 libopengl0 arm64 1.7.0-1+b1 [32.1 kB]
Get:152 http://deb.debian.org/debian sid/main arm64 libopengl-dev arm64 1.7.0-1+b1 [5372 B]
Get:153 http://deb.debian.org/debian sid/main arm64 libglvnd-dev arm64 1.7.0-1+b1 [5140 B]
Get:154 http://deb.debian.org/debian sid/main arm64 libgl1-mesa-dev arm64 24.2.4-1 [18.5 kB]
Get:155 http://deb.debian.org/debian sid/main arm64 libglu1-mesa arm64 9.0.2-1.1+b1 [156 kB]
Get:156 http://deb.debian.org/debian sid/main arm64 libglu1-mesa-dev arm64 9.0.2-1.1+b1 [196 kB]
Get:157 http://deb.debian.org/debian sid/main arm64 libxext-dev arm64 2:1.3.4-1+b2 [105 kB]
Get:158 http://deb.debian.org/debian sid/main arm64 x11-common all 1:7.7+23.1 [216 kB]
Get:159 http://deb.debian.org/debian sid/main arm64 libice6 arm64 2:1.0.10-1+b1 [53.7 kB]
Get:160 http://deb.debian.org/debian sid/main arm64 libsm6 arm64 2:1.2.3-1+b1 [32.7 kB]
Get:161 http://deb.debian.org/debian sid/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [172 kB]
Get:162 http://deb.debian.org/debian sid/main arm64 libice-dev arm64 2:1.0.10-1+b1 [64.1 kB]
Get:163 http://deb.debian.org/debian sid/main arm64 libsm-dev arm64 2:1.2.3-1+b1 [36.4 kB]
Get:164 http://deb.debian.org/debian sid/main arm64 libxt-dev arm64 1:1.2.1-1.2 [403 kB]
Get:165 http://deb.debian.org/debian sid/main arm64 libglut-dev arm64 3.4.0-1+b1 [161 kB]
Get:166 http://deb.debian.org/debian sid/main arm64 freeglut3-dev arm64 3.4.0-1+b1 [53.4 kB]
Get:167 http://deb.debian.org/debian sid/main arm64 hdf5-helpers arm64 1.10.10+repack-4 [23.5 kB]
Get:168 http://deb.debian.org/debian sid/main arm64 icu-devtools arm64 72.1-5 [194 kB]
Get:169 http://deb.debian.org/debian sid/main arm64 libaec0 arm64 1.1.3-1 [22.1 kB]
Get:170 http://deb.debian.org/debian sid/main arm64 libsz2 arm64 1.1.3-1 [7664 B]
Get:171 http://deb.debian.org/debian sid/main arm64 libaec-dev arm64 1.1.3-1 [19.7 kB]
Get:172 http://deb.debian.org/debian sid/main arm64 libavahi-common-data arm64 0.8-13+b2 [112 kB]
Get:173 http://deb.debian.org/debian sid/main arm64 libavahi-common3 arm64 0.8-13+b2 [42.4 kB]
Get:174 http://deb.debian.org/debian sid/main arm64 libdbus-1-3 arm64 1.14.10-4+b1 [195 kB]
Get:175 http://deb.debian.org/debian sid/main arm64 libavahi-client3 arm64 0.8-13+b2 [45.7 kB]
Get:176 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-3 [91.7 kB]
Get:177 http://deb.debian.org/debian sid/main arm64 libbrotli-dev arm64 1.1.0-2+b4 [308 kB]
Get:178 http://deb.debian.org/debian sid/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB]
Get:179 http://deb.debian.org/debian sid/main arm64 libpixman-1-0 arm64 0.42.2-1+b1 [477 kB]
Get:180 http://deb.debian.org/debian sid/main arm64 libxcb-render0 arm64 1.17.0-2 [115 kB]
Get:181 http://deb.debian.org/debian sid/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB]
Get:182 http://deb.debian.org/debian sid/main arm64 libcairo2 arm64 1.18.2-2 [483 kB]
Get:183 http://deb.debian.org/debian sid/main arm64 libcups2t64 arm64 2.4.10-2 [235 kB]
Get:184 http://deb.debian.org/debian sid/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10 [169 kB]
Get:185 http://deb.debian.org/debian sid/main arm64 libunbound8 arm64 1.22.0-1 [553 kB]
Get:186 http://deb.debian.org/debian sid/main arm64 libgnutls-dane0t64 arm64 3.8.6-2 [436 kB]
Get:187 http://deb.debian.org/debian sid/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2 [436 kB]
Get:188 http://deb.debian.org/debian sid/main arm64 libidn2-dev arm64 2.3.7-2 [122 kB]
Get:189 http://deb.debian.org/debian sid/main arm64 libp11-kit-dev arm64 0.25.5-2 [208 kB]
Get:190 http://deb.debian.org/debian sid/main arm64 libtasn1-6-dev arm64 4.19.0-3+b2 [96.2 kB]
Get:191 http://deb.debian.org/debian sid/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b1 [329 kB]
Get:192 http://deb.debian.org/debian sid/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b1 [619 kB]
Get:193 http://deb.debian.org/debian sid/main arm64 nettle-dev arm64 3.10-1 [1323 kB]
Get:194 http://deb.debian.org/debian sid/main arm64 libgnutls28-dev arm64 3.8.6-2 [1394 kB]
Get:195 http://deb.debian.org/debian sid/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB]
Get:196 http://deb.debian.org/debian sid/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB]
Get:197 http://deb.debian.org/debian sid/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB]
Get:198 http://deb.debian.org/debian sid/main arm64 libnghttp2-dev arm64 1.63.0-1 [112 kB]
Get:199 http://deb.debian.org/debian sid/main arm64 libnghttp3-dev arm64 1.4.0-1 [85.3 kB]
Get:200 http://deb.debian.org/debian sid/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.6.0-1 [23.7 kB]
Get:201 http://deb.debian.org/debian sid/main arm64 libngtcp2-dev arm64 1.6.0-1 [165 kB]
Get:202 http://deb.debian.org/debian sid/main arm64 libpsl-dev arm64 0.21.2-1.1 [77.7 kB]
Get:203 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:204 http://deb.debian.org/debian sid/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b4 [67.3 kB]
Get:205 http://deb.debian.org/debian sid/main arm64 libssl-dev arm64 3.3.2-1 [3185 kB]
Get:206 http://deb.debian.org/debian sid/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB]
Get:207 http://deb.debian.org/debian sid/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [330 kB]
Get:208 http://deb.debian.org/debian sid/main arm64 libcurl4-gnutls-dev arm64 8.10.1-2 [456 kB]
Get:209 http://deb.debian.org/debian sid/main arm64 libcurl4t64 arm64 8.10.1-2 [322 kB]
Get:210 http://deb.debian.org/debian sid/main arm64 libdouble-conversion3 arm64 3.3.0-1+b1 [37.0 kB]
Get:211 http://deb.debian.org/debian sid/main arm64 libevdev2 arm64 1.13.3+dfsg-1 [30.6 kB]
Get:212 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-1 [142 kB]
Get:213 http://deb.debian.org/debian sid/main arm64 libpng-dev arm64 1.6.44-2 [360 kB]
Get:214 http://deb.debian.org/debian sid/main arm64 libfreetype-dev arm64 2.13.3+dfsg-1 [600 kB]
Get:215 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-7 [361 kB]
Get:216 http://deb.debian.org/debian sid/main arm64 libglew2.2 arm64 2.2.0-4+b2 [162 kB]
Get:217 http://deb.debian.org/debian sid/main arm64 libglew-dev arm64 2.2.0-4+b2 [261 kB]
Get:218 http://deb.debian.org/debian sid/main arm64 libglm-dev all 0.9.9.8+ds-7 [183 kB]
Get:219 http://deb.debian.org/debian sid/main arm64 libgraphite2-3 arm64 1.3.14-2 [69.2 kB]
Get:220 http://deb.debian.org/debian sid/main arm64 libgudev-1.0-0 arm64 238-5 [13.6 kB]
Get:221 http://deb.debian.org/debian sid/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB]
Get:222 http://deb.debian.org/debian sid/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4 [1050 kB]
Get:223 http://deb.debian.org/debian sid/main arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-4 [118 kB]
Get:224 http://deb.debian.org/debian sid/main arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-4 [88.1 kB]
Get:225 http://deb.debian.org/debian sid/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4 [60.9 kB]
Get:226 http://deb.debian.org/debian sid/main arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-4 [39.0 kB]
Get:227 http://deb.debian.org/debian sid/main arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-4 [21.4 kB]
Get:228 http://deb.debian.org/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB]
Get:229 http://deb.debian.org/debian sid/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3 [292 kB]
Get:230 http://deb.debian.org/debian sid/main arm64 libjpeg-dev arm64 1:2.1.5-3 [71.9 kB]
Get:231 http://deb.debian.org/debian sid/main arm64 libhdf5-dev arm64 1.10.10+repack-4 [2697 kB]
Get:232 http://deb.debian.org/debian sid/main arm64 libicu-dev arm64 72.1-5 [10.2 MB]
Get:233 http://deb.debian.org/debian sid/main arm64 libwacom-common all 2.13.0-1 [98.0 kB]
Get:234 http://deb.debian.org/debian sid/main arm64 libwacom9 arm64 2.13.0-1 [22.9 kB]
Get:235 http://deb.debian.org/debian sid/main arm64 libinput-bin arm64 1.26.2-1 [25.4 kB]
Get:236 http://deb.debian.org/debian sid/main arm64 libmtdev1t64 arm64 1.1.6-1.2 [21.9 kB]
Get:237 http://deb.debian.org/debian sid/main arm64 libinput10 arm64 1.26.2-1 [118 kB]
Get:238 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:239 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:240 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-3 [158 kB]
Get:241 http://deb.debian.org/debian sid/main arm64 libkpathsea6 arm64 2024.20240313.70630+ds-4 [153 kB]
Get:242 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-3 [1757 kB]
Get:243 http://deb.debian.org/debian sid/main arm64 liblzma-dev arm64 5.6.2-2 [296 kB]
Get:244 http://deb.debian.org/debian sid/main arm64 libmd4c0 arm64 0.5.2-2+b1 [46.1 kB]
Get:245 http://deb.debian.org/debian sid/main arm64 libmpfi0 arm64 1.5.4+ds-3 [34.1 kB]
Get:246 http://deb.debian.org/debian sid/main arm64 libnetcdf19t64 arm64 1:4.9.2-7 [444 kB]
Get:247 http://deb.debian.org/debian sid/main arm64 libnetcdf-dev arm64 1:4.9.2-7 [103 kB]
Get:248 http://deb.debian.org/debian sid/main arm64 libpaper1 arm64 1.1.29+b1 [12.9 kB]
Get:249 http://deb.debian.org/debian sid/main arm64 libpaper-utils arm64 1.1.29+b1 [9068 B]
Get:250 http://deb.debian.org/debian sid/main arm64 libpcre2-16-0 arm64 10.42-4+b1 [217 kB]
Get:251 http://deb.debian.org/debian sid/main arm64 libpotrace0 arm64 1.16-2+b1 [23.1 kB]
Get:252 http://deb.debian.org/debian sid/main arm64 libptexenc1 arm64 2024.20240313.70630+ds-4 [47.9 kB]
Get:253 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:254 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:255 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:256 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:257 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:258 http://deb.debian.org/debian sid/main arm64 libqt5core5t64 arm64 5.15.13+dfsg-4 [1734 kB]
Get:259 http://deb.debian.org/debian sid/main arm64 libqt5dbus5t64 arm64 5.15.13+dfsg-4 [204 kB]
Get:260 http://deb.debian.org/debian sid/main arm64 libqt5network5t64 arm64 5.15.13+dfsg-4 [651 kB]
Get:261 http://deb.debian.org/debian sid/main arm64 libxcb-icccm4 arm64 0.4.2-1 [27.2 kB]
Get:262 http://deb.debian.org/debian sid/main arm64 libxcb-util1 arm64 0.4.0-1+b2 [22.6 kB]
Get:263 http://deb.debian.org/debian sid/main arm64 libxcb-image0 arm64 0.4.0-2+b1 [22.0 kB]
Get:264 http://deb.debian.org/debian sid/main arm64 libxcb-keysyms1 arm64 0.4.0-1+b3 [15.8 kB]
Get:265 http://deb.debian.org/debian sid/main arm64 libxcb-render-util0 arm64 0.3.9-1+b2 [17.5 kB]
Get:266 http://deb.debian.org/debian sid/main arm64 libxcb-shape0 arm64 1.17.0-2 [105 kB]
Get:267 http://deb.debian.org/debian sid/main arm64 libxcb-xinerama0 arm64 1.17.0-2 [105 kB]
Get:268 http://deb.debian.org/debian sid/main arm64 libxcb-xinput0 arm64 1.17.0-2 [129 kB]
Get:269 http://deb.debian.org/debian sid/main arm64 libxcb-xkb1 arm64 1.17.0-2 [128 kB]
Get:270 http://deb.debian.org/debian sid/main arm64 xkb-data all 2.42-1 [790 kB]
Get:271 http://deb.debian.org/debian sid/main arm64 libxkbcommon0 arm64 1.6.0-1+b1 [103 kB]
Get:272 http://deb.debian.org/debian sid/main arm64 libxkbcommon-x11-0 arm64 1.6.0-1+b1 [15.4 kB]
Get:273 http://deb.debian.org/debian sid/main arm64 libqt5gui5t64 arm64 5.15.13+dfsg-4 [3197 kB]
Get:274 http://deb.debian.org/debian sid/main arm64 libqt5widgets5t64 arm64 5.15.13+dfsg-4 [2283 kB]
Get:275 http://deb.debian.org/debian sid/main arm64 libqt5xml5t64 arm64 5.15.13+dfsg-4 [121 kB]
Get:276 http://deb.debian.org/debian sid/main arm64 libqt5designer5 arm64 5.15.13-4+b1 [2720 kB]
Get:277 http://deb.debian.org/debian sid/main arm64 libqt5sql5t64 arm64 5.15.13+dfsg-4 [120 kB]
Get:278 http://deb.debian.org/debian sid/main arm64 libqt5help5 arm64 5.15.13-4+b1 [145 kB]
Get:279 http://deb.debian.org/debian sid/main arm64 libqt5opengl5t64 arm64 5.15.13+dfsg-4 [143 kB]
Get:280 http://deb.debian.org/debian sid/main arm64 libqt5printsupport5t64 arm64 5.15.13+dfsg-4 [198 kB]
Get:281 http://deb.debian.org/debian sid/main arm64 libqt5test5t64 arm64 5.15.13+dfsg-4 [138 kB]
Get:282 http://deb.debian.org/debian sid/main arm64 libsynctex2 arm64 2024.20240313.70630+ds-4 [60.2 kB]
Get:283 http://deb.debian.org/debian sid/main arm64 libteckit0 arm64 2.5.12+ds1-1 [300 kB]
Get:284 http://deb.debian.org/debian sid/main arm64 libtexlua53-5 arm64 2024.20240313.70630+ds-4 [106 kB]
Get:285 http://deb.debian.org/debian sid/main arm64 libxmu6 arm64 2:1.1.3-3+b2 [55.5 kB]
Get:286 http://deb.debian.org/debian sid/main arm64 libxpm4 arm64 1:3.5.17-1+b1 [52.9 kB]
Get:287 http://deb.debian.org/debian sid/main arm64 libxaw7 arm64 2:1.0.14-1+b2 [182 kB]
Get:288 http://deb.debian.org/debian sid/main arm64 libzzip-0-13t64 arm64 0.13.72+dfsg.1-1.3 [56.6 kB]
Get:289 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:290 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:291 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
Get:292 http://deb.debian.org/debian sid/main arm64 python3-opengl all 3.1.7+dfsg-1 [604 kB]
Get:293 http://deb.debian.org/debian sid/main arm64 tex-common all 6.18 [32.5 kB]
Get:294 http://deb.debian.org/debian sid/main arm64 texlive-binaries arm64 2024.20240313.70630+ds-4 [7373 kB]
Get:295 http://deb.debian.org/debian sid/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:296 http://deb.debian.org/debian sid/main arm64 texlive-base all 2024.20240829-2 [22.7 MB]
Get:297 http://deb.debian.org/debian sid/main arm64 texlive-latex-base all 2024.20240829-2 [1273 kB]
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dpkg: libxml2:arm64: dependency problems, but removing anyway as you requested:
shared-mime-info depends on libxml2 (>= 2.7.4).
libxml-libxml-perl depends on libxml2 (>= 2.12.7+dfsg+really2.9.14-0.1).
libappstream5:arm64 depends on libxml2 (>= 2.9.0).
gettext depends on libxml2 (>= 2.9.1).
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Regenerating fonts cache... done.
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update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libegl1:arm64 (1.7.0-1+b1) ...
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tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
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tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
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Setting up libnetcdf-dev (1:4.9.2-7) ...
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Setting up g++ (4:14.2.0-1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up build-essential (12.12) ...
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Setting up libgl-dev:arm64 (1.7.0-1+b1) ...
Setting up python3-pkg-resources (75.2.0-1) ...
Setting up python3-all-dev (3.12.6-1+debusine1) ...
Setting up python3-setuptools (75.2.0-1) ...
Setting up libegl-dev:arm64 (1.7.0-1+b1) ...
Setting up debhelper (13.20) ...
Setting up python3-opengl (3.1.7+dfsg-1) ...
/usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ '
'''OpenGL extension AMD.vertex_shader_tessellator
/usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:1: SyntaxWarning: invalid escape sequence '\ '
'''OpenGL extension AMD.vertex_shader_tessellator
Setting up libqt5gui5t64:arm64 (5.15.13+dfsg-4) ...
Setting up libglu1-mesa-dev:arm64 (9.0.2-1.1+b1) ...
Setting up python3-numpy (1:1.26.4+ds-11+bootstrap1) ...
Setting up libgles-dev:arm64 (1.7.0-1+b1) ...
Setting up dh-python (6.20240824) ...
Setting up libqt5widgets5t64:arm64 (5.15.13+dfsg-4) ...
Setting up libglvnd-dev:arm64 (1.7.0-1+b1) ...
Setting up libqt5help5:arm64 (5.15.13-4+b1) ...
Setting up libglew-dev:arm64 (2.2.0-4+b2) ...
Setting up libgl1-mesa-dev:arm64 (24.2.4-1) ...
Setting up libqt5opengl5t64:arm64 (5.15.13+dfsg-4) ...
Setting up libglut-dev:arm64 (3.4.0-1+b1) ...
Setting up libqt5printsupport5t64:arm64 (5.15.13+dfsg-4) ...
Setting up libqt5designer5:arm64 (5.15.13-4+b1) ...
Setting up freeglut3-dev:arm64 (3.4.0-1+b1) ...
Setting up python3-pyqt5 (5.15.11+dfsg-1+debusine1) ...
Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-1+debusine1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for libc-bin (2.40-3) ...
Processing triggers for tex-common (6.18) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.4-1
Package versions: appstream_1.0.3-1 apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-python_6.20240824 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 fontconfig_2.15.0-1.1 fontconfig-config_2.15.0-1.1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lmodern_2.005-1 freeglut3-dev_3.4.0-1+b1 g++_4:14.2.0-1 g++-14_14.2.0-7 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: pymol
Binary: pymol, python3-pymol, pymol-data
Architecture: any all
Version: 3.0.0+dfsg-1
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Uploaders: Michael Banck <mbanck@debian.org>
Homepage: https://www.pymol.org
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/debichem-team/pymol
Vcs-Git: https://salsa.debian.org/debichem-team/pymol.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, freeglut3-dev, libfreetype-dev, libglew-dev, libglm-dev, libnetcdf-dev, libpng-dev, python3-all, python3-all-dev, python3-numpy, python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, texlive-latex-base, libxml2-dev
Package-List:
pymol deb science optional arch=all
pymol-data deb science optional arch=all
python3-pymol deb python optional arch=any
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Files:
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gpgv: Signature made Mon Jul 22 19:24:21 2024 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./pymol_3.0.0+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting pymol in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pymol_3.0.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking pymol_3.0.0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 03_povray.patch
dpkg-source: info: applying 22_fix_pymol_import.patch
dpkg-source: info: applying 27_fix_pymol_path_in_setup.patch
dpkg-source: info: applying 28_no_data_install_in_python_path.patch
dpkg-source: info: applying 31_fix_format-security.patch
dpkg-source: info: applying 32_fix_spelling_lintian_warnings.patch
dpkg-source: info: applying 33_fix_relative_paths_in_example_scripts.patch
dpkg-source: info: applying 34_fix_examples_add_fetch_instead_of_load.patch
dpkg-source: info: applying 40_mstop_movies.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 3.0.0+dfsg-1+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package pymol
dpkg-buildpackage: info: source version 3.0.0+dfsg-1+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --buildsystem pybuild
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py clean
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
I: pybuild base:311: python3.12 setup.py clean
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
dh_autoreconf_clean -O--buildsystem=pybuild
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f -r build test/tmp test/cmp generated
dh_clean debian/pymol-ref-card.* \
Rules.make create_shadertext.pyc
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules binary-arch
dh binary-arch --buildsystem pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config
I: pybuild base:311: python3.12 setup.py config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.13 setup.py build
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
782 | if (strlen(atoms[i].type) > fw) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function]
103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
275 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
289 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
199 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
209 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
127 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
138 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
74 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
82 | fgets(line, LINESIZE, fd); // Read the molecule info
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(line, LINESIZE, fd); // Read the charge_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
273 | if(ok) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
413 | return ok;
| ^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
224 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
174 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
180 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
189 | for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
194 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
84 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
77 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
435 | fscanf(file, " " DBLFMT, &prm->Charges[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
444 | fscanf(file, " " DBLFMT, &prm->Masses[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
510 | fscanf(file, " " DBLFMT, &prm->Rk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
517 | fscanf(file, " " DBLFMT, &prm->Req[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
524 | fscanf(file, " " DBLFMT, &prm->Tk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
531 | fscanf(file, " " DBLFMT, &prm->Teq[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
538 | fscanf(file, " " DBLFMT, &prm->Pk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
545 | fscanf(file, " " DBLFMT, &prm->Pn[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
552 | fscanf(file, " " DBLFMT, &prm->Phase[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
559 | fscanf(file, " " DBLFMT, &prm->Solty[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
756 | fscanf(file, " " DBLFMT, &prm->HB12[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
763 | fscanf(file, " " DBLFMT, &prm->HB6[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
771 | fscanf(file, " " DBLFMT, &H[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
868 | &prm->Natcap, &prm->Cutcap,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
869 | &prm->Xcap, &prm->Ycap, &prm->Zcap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
233 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
247 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fread(fileHeader, sizeof(short), 19, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fscanf(fd, "%3s", keyWord);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
123 | fscanf(fd, " %s %f", keyWord, &prod);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
128 | fscanf(fd, " %s %f", keyWord, &plus);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
135 | fscanf(fd, " %s %f", keyWord, &sigma);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_readline’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
279 | for (i = 0; i < strlen(line); ++i) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
970 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
971 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1113 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1114 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1511 | fread(skip, 1, 8, fp);
| ^~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
619 | fscanf(data->file, "%*s %f %f %f", &x, &y, &z);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable]
596 | molfile_qm_hessian_t *hessian_data;
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘count_orbitals’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1165 | fscanf(data->file, " Ene= %f\n", &orbenergy);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1166 | fscanf(data->file, " Spin= %s\n", spin);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1167 | fscanf(data->file, " Occup= %f\n", &occu);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
840 | fgets(readbuf, 1024, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
282 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘open_molden_read’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
224 | fscanf(data->file, "%d", &natm);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
150 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
71 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
75 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
103 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
426 | fgets(buf, n, mf->f);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_structure’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
350 | strncpy(atom->type, atname, sizeof(atom->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
351 | strncpy(atom->name, atname, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
317 | strncpy(atom->name, atname, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
326 | strncpy(data->atoms[i].type, atname, sizeof(data->atoms[i].type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
326 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
339 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
344 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
349 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
363 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
373 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
266 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
268 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
272 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
295 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
305 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
169 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
179 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
182 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
210 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
213 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
224 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
226 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
230 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
234 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
245 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
127 | sprintf(atom->resname, "%d", resid);
| ^~
In function ‘read_car_structure_line’,
inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
127 | sprintf(atom->resname, "%d", resid);
| ^~~~
In file included from /usr/include/stdio.h:970,
from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
In function ‘sprintf’,
inlined from ‘read_car_structure_line’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:5,
inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 8
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
239 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
242 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
238 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
150 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
71 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
75 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
103 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
304 | fgets(symData, 81, fd);
| ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
360 | strncpy(tmptype, atom->type, sizeof(atom->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
232 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
246 | for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
249 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
256 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
195 | for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
198 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
203 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
73 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable]
48 | double timesteprst;
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
67 | fgets(title, 82, fd);
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
70 | fgets(line, 82, fd);
| ^~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
116 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
132 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
149 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
155 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
161 | fgets(line, 80, infile); //one more read to keep us in sync
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
170 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
217 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
256 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
144 | strncpy(numstr, record + 30, 8);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
149 | strncpy(numstr+10, record + 38, 8);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
154 | strncpy(numstr+20, record + 46, 8);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
159 | strncpy(numstr+30, record + 54, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
164 | strncpy(numstr+40, record + 60, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
283 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
228 | for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
233 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
252 | for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘open_vaspxdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
89 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
97 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
111 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
121 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_pdb_structure’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
299 | strncpy(name, record + 12, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3: warning: ‘__builtin_strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
304 | strncpy(altloc, record + 16, 1);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
308 | strncpy(resname, record + 17, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
317 | strncpy(resid, record + 22, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
159 | strncpy(numstr+30, record + 54, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
164 | strncpy(numstr+40, record + 60, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
330 | strncpy(segname, record + 72, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5: warning: ‘__builtin_strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
339 | strncpy(elementsymbol, record + 76, 2);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘open_pdb_read’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5: warning: ‘__builtin_strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
190 | strncpy(date, record + 50, 9);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
200 | strncpy(pdbcode, record + 62, 4);
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: ‘goto_keyline’ defined but not used [-Wunused-function]
962 | static int goto_keyline(FILE *file, ...) {
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: ‘eatwhitelines’ defined but not used [-Wunused-function]
846 | static void eatwhitelines(FILE *file) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: ‘eatline’ defined but not used [-Wunused-function]
835 | static void eatline(FILE * fd, int n)
| ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: ‘angular_momentum_expon’ defined but not used [-Wunused-function]
540 | static void angular_momentum_expon(int *ang_mom_expon,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: ‘add_wavefunction’ defined but not used [-Wunused-function]
471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: ‘init_qmdata’ defined but not used [-Wunused-function]
437 | static qmdata_t* init_qmdata() {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable]
103 | int i, numatoms;
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘write_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
78 | fread(&filen, sizeof(namdbin_int32), 1, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
139 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
144 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘open_vaspxml_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
86 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable]
443 | int i, uid;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable]
484 | int i, count, atomdata, pos, idx, xyzcount, j;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable]
503 | char oldChain[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
803 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable]
807 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
811 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable]
822 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable]
884 | int test = parser->nbonds + bnum;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
984 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable]
988 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
991 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable]
1002 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable]
1409 | FILE* fd;
| ^~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
519 | if (rc != iov[i].iov_len)
| ^~
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
730 | if (len > sizeof(name)) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
243 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
252 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
328 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
346 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
355 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
419 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
194 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
203 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
59 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
175 | fgets(readbuf, 1023, cube->fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
181 | fgets(readbuf, 1023, cube->fd); // skip second header line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
326 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
337 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
339 | fscanf(cube->fd, "%d", &cube->nsets);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
344 | fscanf(cube->fd, "%d", &orb);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
286 | fread(datablock, total * sizeof(float), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_read_bonds’:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
147 | sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n",
| ^~
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_open_file_read’:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9: warning: ‘__builtin___strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
538 | strncat(msg, keyword, 200);
| ^
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7: warning: ‘__builtin___strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
629 | strncat(msg, keyword, 200);
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
519 | if (rc != iov[i].iov_len)
| ^~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
96 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
104 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
119 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
153 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
162 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
171 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
222 | if (input_integer[0] != dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable]
546 | fio_size_t readlen; /* number of bytes actually read */
| ^~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
609 | static int fio_write_str(fio_fd fd, const char *str) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
605 | static int fio_read_int32(fio_fd fd, int *i) {
| ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’:
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
64 | fread(magicchar,sizeof(char),4,fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fread(&igarb,sizeof(int),1,fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c: In function ‘read_tinker_structure’:
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
103 | strncpy(atom->name, buffer, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
102 | fread(&headersize, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
78 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
257 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
275 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
289 | fscanf(file, " %d", &cur);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parmstruct* read_parm7_header(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
368 | fgets(sdum, 512, file);
| ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
371 | fscanf(file, "%s\n", sdum); // "%FLAG"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
399 | fgets(prm->title, sizeof(prm->title), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
427 | fgets(sdum, sizeof(sdum), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
439 | fscanf(file,parm7,
| ~~~~~~^~~~~~~~~~~~
440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | &prm->Jparm, &prm->Nparm);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
443 | fscanf(file, parm7,
| ~~~~~~^~~~~~~~~~~~~
444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &prm->Natyp, &prm->Nphb);
| ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
451 | fscanf(file,"%8d",&prm->Numextra); //BB
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
97 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
288 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
297 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
365 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
387 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
395 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
455 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
241 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
250 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | fread(intHeader, sizeof(int), 5, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
82 | fread(floatHeader, sizeof(float), 6, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
714 | sprintf(sub, "%03x/", i);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646]
714 | sprintf(sub, "%03x/", i);
| ^~~~~~~
In file included from /usr/include/stdio.h:970,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
In function ‘int sprintf(char*, const char*, ...)’,
inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
722 | sprintf(subsub, "%03x", j);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646]
722 | sprintf(subsub, "%03x", j);
| ^~~~~~
In function ‘int sprintf(char*, const char*, ...)’,
inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
292 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
295 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
669 | fgets(fbuffer, 1024, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
554 | fgets(fbuffer, 1024, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable]
459 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable]
1407 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable]
1541 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
362 | strncpy(atom->name, buf, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1629 | fread (&len, sizeof(int), 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1631 | fread (str, len, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2057 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2063 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2069 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2075 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2081 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2087 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2093 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2099 | fread (ptr, 8, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
267 | strncpy(atom->name, buf, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
675 | sprintf(answer, "%03x/", d1);
| ^
In function ‘int sprintf(char*, const char*, ...)’,
inlined from ‘std::string DDreldir(const std::string&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:13,
inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~
In function ‘std::string DDreldir(const std::string&, int, int)’,
inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~~~~~~~~~
In function ‘int sprintf(char*, const char*, ...)’,
inlined from ‘std::string DDreldir(const std::string&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:13,
inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘char* recreate_command_line(int, char**)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
1334 | line[0] = '\0';
| ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
1333 | line = (char *) malloc (sizeof(char) * len);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
238 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
408 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
442 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
444 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
446 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
448 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
450 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
473 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
508 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable]
1904 | int last_ctnumber = -1;
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c: In function ‘read_xyz_structure’:
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
133 | strncpy(atom->name, buffer, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
109 | strncpy(tmp, record, PQR_RECORD_LENGTH);
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_structure’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
137 | strncpy(name, record+12, 4); name[4] = 0;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
138 | strncpy(resname, record+17, 4); resname[4] = 0;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3: warning: ‘__builtin_strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
139 | strncpy(chain, record+21, 1); chain[1] = 0;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
140 | strncpy(resid, record+22, 4); resid[4] = 0;
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [8, 12] into destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [16, 20] into destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [24, 28] into destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [32, 36] into destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [40, 44] into destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [48, 52] into destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [8, 12] into destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [16, 20] into destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [24, 28] into destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [32, 36] into destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [40, 44] into destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [48, 52] into destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [8, 12] into destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [16, 20] into destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [24, 28] into destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [32, 36] into destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [40, 44] into destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [48, 52] into destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
layer0/Texture.cpp: In function ‘bool TextureIsCharTextured(PyMOLGlobals*, int, float*)’:
layer0/Texture.cpp:130:9: warning: unused variable ‘use_shader’ [-Wunused-variable]
130 | short use_shader = (short) SettingGetGlobal_b(G, cSetting_use_shaders);
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
240 | fgets(readbuf, 13, edm->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
44 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
1106 | char word[3][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
2264 | char word[7][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
3573 | char word[6][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
840 | fgets(readbuf, 1024, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: ‘print_input_data’ defined but not used [-Wunused-function]
1002 | static void print_input_data(qmdata_t *data) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘read_gamess_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
615 | strncpy(sys_data->basis_string, data->basis_string,
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
620 | strncpy(sys_data->runtitle, data->runtitle, sizeof(sys_data->runtitle));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
621 | strncpy(sys_data->geometry, data->geometry, sizeof(sys_data->geometry));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
622 | strncpy(sys_data->version_string, data->version_string,
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_coordinates’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
1618 | strncpy(atm->type, atname, sizeof(atm->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_options’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: warning: ‘__builtin___strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
1422 | strncat(data->basis_string, &data->gbasis[3], 1);
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: warning: ‘__builtin___strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
1411 | strncat(data->basis_string, &data->gbasis[2], 1);
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_input_structure’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
1682 | strncpy(atm->type, atname, sizeof(atm->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: warning: ‘__builtin_strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
1981 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl_firefly’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: warning: ‘__builtin_strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
1818 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_proc_mem.isra’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: warning: ‘__builtin_strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
1279 | strncpy(data->memory,&word[2][0],sizeof(data->memory));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
1272 | strncpy(data->memory,trimright(temp),sizeof(data->memory));
| ^
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘get_traj_frame.isra’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5: warning: ‘__builtin_strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
819 | strncpy((*atoms)[i].type, (*atoms)[indexmap[i]].type, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
278 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
297 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
319 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
357 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
223 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
241 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
164 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
176 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
183 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
186 | fread(line3, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’
284 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
285 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’
291 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’
305 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
306 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’
307 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’
311 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’
313 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’
318 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
319 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’
320 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’
328 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
329 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’
330 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’
354 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
355 | fread(vertex, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’
356 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’
357 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
358 | fread(access, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’
359 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’
360 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
361 | fread(normal, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’
362 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’
371 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
372 | fread(triangle, 3 * sizeof(int), ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’
373 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’
374 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
375 | fread(properties, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’
394 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
395 | fread(striangle, sizeof(short), 3 * ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’
396 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’
397 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
398 | fread(properties, sizeof(float), 3 * nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’:
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ^~~~~~~~~
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer1/SymOp.cpp: In member function ‘std::string pymol::SymOp::to_string() const’:
layer1/SymOp.cpp:37:32: warning: ‘%d’ directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~~~~~~~~~~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14/cstdio:42,
from /usr/include/c++/14/ext/string_conversions.h:45,
from /usr/include/c++/14/bits/basic_string.h:4154,
from /usr/include/c++/14/string:54,
from layer1/SymOp.h:9,
from layer1/SymOp.cpp:7:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘std::string pymol::SymOp::to_string() const’ at layer1/SymOp.cpp:37:16:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 6 and 17 bytes into a destination of size 8
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from include/tnt/tnt.h:45,
from layer0/ccealignmodule.cpp:39:
In member function ‘void TNT::Array1D<T>::set_(T*, T*, const T&) [with T = double]’,
inlined from ‘TNT::Array1D<T>::Array1D(int, const T&) [with T = double]’ at include/tnt/tnt_array1d.h:119:6,
inlined from ‘PyObject* findBest(pcePoint, pcePoint, pathCache, int, int, int)’ at layer0/ccealignmodule.cpp:506:28:
include/tnt/tnt_array1d.h:283:20: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
283 | *p = a;
| ~~~^~~
layer1/Ray.cpp: In function ‘void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)’:
layer1/Ray.cpp:1535:20: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
1535 | "%s"
| ^~
......
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~
layer1/Ray.cpp:1530:18: note: ‘sprintf’ output between 116 and 2993 bytes into a destination of size 1024
1530 | sprintf(buffer,
| ~~~~~~~^~~~~~~~
1531 | "Transform {\n"
| ~~~~~~~~~~~~~~~
1532 | " translation %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1533 | " rotation %8.6f %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1534 | " children [\n"
| ~~~~~~~~~~~~~~~
1535 | "%s"
| ~~~~
1536 | " ]\n"
| ~~~~~~
1537 | "}\n",
| ~~~~~~
1538 | vert2[0] - mid[0],
| ~~~~~~~~~~~~~~~~~~
1539 | vert2[1] - mid[1],
| ~~~~~~~~~~~~~~~~~~
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
from /usr/include/c++/14/bits/specfun.h:43,
from /usr/include/c++/14/cmath:3898,
from /usr/include/c++/14/math.h:36,
from layer0/os_std.h:24,
from layer1/Scene.cpp:18:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = float; typename decay<_Tp2>::type = float]’:
layer1/Scene.cpp:1485:24: required from here
1485 | return std::make_pair(clip.m_front, clip.m_back);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
layer2/ObjectMolecule.cpp: In function ‘CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)’:
layer2/ObjectMolecule.cpp:7603:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
7603 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
| ^~ ~~~~~~~
In file included from layer2/ObjectMolecule.cpp:49:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 34 and 289 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:7602:3: note: in expansion of macro ‘PRINTFB’
7602 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
layer2/ObjectMolecule.cpp: In member function ‘virtual void ObjectMolecule::update()’:
layer2/ObjectMolecule.cpp:10629:82: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
10629 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 68 and 333 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:10628:13: note: in expansion of macro ‘PRINTFB’
10628 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)’:
layer2/ObjectMolecule.cpp:10755:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
10755 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~
10756 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~
layer2/ObjectMolecule.cpp:10755:21: note: directive argument in the range [-2147483647, 2147483647]
10755 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp:10755:14: note: ‘sprintf’ output between 78 and 2036 bytes into a destination of size 1024
10755 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
10756 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/SceneMouse.cpp: In function ‘void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)’:
layer1/SceneMouse.cpp:453:32: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
453 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G);
| ^~ ~~~~
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14/cstdio:42,
from /usr/include/c++/14/ext/string_conversions.h:45,
from /usr/include/c++/14/bits/basic_string.h:4154,
from /usr/include/c++/14/string:54,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from include/pymol/zstring_view.h:12,
from layer1/SceneMouse.h:4,
from layer1/SceneMouse.cpp:1:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)’ at layer1/SceneMouse.cpp:452:11:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output 21 or more bytes (assuming 276) into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘void ObjectMapDump(const ObjectMap*, const char*, int, int)’:
layer2/ObjectMap.cpp:5983:24: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
5983 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
| ^~
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.13/Python.h:37,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘void ObjectMapDump(const ObjectMap*, const char*, int, int)’ at layer2/ObjectMap.cpp:5982:5:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output 30 or more bytes (assuming 285) into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule2.cpp: In function ‘int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)’:
layer2/ObjectMolecule2.cpp:335:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
| ^~
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.13/Python.h:37,
from layer0/os_python.h:34,
from layer2/ObjectMolecule2.cpp:24:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)’ at layer2/ObjectMolecule2.cpp:334:7:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 26 and 291 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2962:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2962 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2961:5,
inlined from ‘ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4804:25,
inlined from ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’ at layer2/ObjectMap.cpp:4836:28:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2971:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2971 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2970:5,
inlined from ‘ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4804:25,
inlined from ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’ at layer2/ObjectMap.cpp:4836:28:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2977:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2977 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2976:5,
inlined from ‘ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4804:25,
inlined from ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’ at layer2/ObjectMap.cpp:4836:28:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’:
layer2/ObjectMap.cpp:3059:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
3059 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:3058:5,
inlined from ‘ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4804:25,
inlined from ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’ at layer2/ObjectMap.cpp:4836:28:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1717:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
1717 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
| ^~
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14/cstdio:42,
from /usr/include/c++/14/ext/string_conversions.h:45,
from /usr/include/c++/14/bits/basic_string.h:4154,
from /usr/include/c++/14/string:54,
from layer3/Selector.cpp:20:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’ at layer3/Selector.cpp:1716:19:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 59 and 324 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:4291:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4291 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4290:3:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:4291:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4291 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4290:3:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function ‘void EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)’:
layer3/Editor.cpp:1935:29: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
1935 | " Editor: grabbing (%s).", name ENDFB(G);
| ^~ ~~~~
In file included from layer3/Editor.cpp:42:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Editor.cpp:1934:7: note: in expansion of macro ‘PRINTFB’
1934 | PRINTFB(G, FB_Editor, FB_Blather)
| ^~~~~~~
layer2/ObjectMesh.cpp: In member function ‘virtual void ObjectMesh::update()’:
layer2/ObjectMesh.cpp:503:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
503 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
| ^~
In file included from layer2/ObjectMesh.cpp:41:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 305 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:502:9: note: in expansion of macro ‘PRINTFB’
502 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors)
| ^~~~~~~
layer2/ObjectMesh.cpp:536:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
536 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 27 and 282 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:535:13: note: in expansion of macro ‘PRINTFB’
535 | PRINTFB(G, FB_ObjectMesh, FB_Details)
| ^~~~~~~
layer3/Editor.cpp: In function ‘void EditorDefineExtraPks(PyMOLGlobals*)’:
layer3/Editor.cpp:337:29: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
337 | sprintf(buffer, "(byres %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:337:12: note: ‘sprintf’ output between 9 and 264 bytes into a destination of size 256
337 | sprintf(buffer, "(byres %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:339:31: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
339 | sprintf(buffer, "(bychain %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:339:12: note: ‘sprintf’ output between 11 and 266 bytes into a destination of size 256
339 | sprintf(buffer, "(bychain %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:341:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
341 | sprintf(buffer, "(byobject %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:341:12: note: ‘sprintf’ output between 12 and 267 bytes into a destination of size 256
341 | sprintf(buffer, "(byobject %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMesh.cpp: In function ‘void ObjectMeshDump(ObjectMesh*, const char*, int, int)’:
layer2/ObjectMesh.cpp:330:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
330 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output 31 or more bytes (assuming 286) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:329:7: note: in expansion of macro ‘PRINTFB’
329 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions)
| ^~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’:
layer2/ObjectSlice.cpp:639:42: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
| ^~
In file included from layer2/ObjectSlice.cpp:44:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 51 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:638:9: note: in expansion of macro ‘PRINTFB’
638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors)
| ^~~~~~~
layer2/ObjectSlice.cpp:650:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 28 and 283 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:649:11: note: in expansion of macro ‘PRINTFB’
649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather)
| ^~~~~~~
layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’:
layer2/ObjectSurface.cpp:269:30: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
269 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer2/ObjectSurface.cpp:45:
layer0/Feedback.h:274:15: note: ‘snprintf’ output 34 or more bytes (assuming 289) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:268:7: note: in expansion of macro ‘PRINTFB’
268 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions)
| ^~~~~~~
In file included from layer1/Setting.h:27,
from layer1/PyMOLObject.h:25,
from layer3/Executive.h:25,
from layer3/Executive.cpp:37:
layer0/Result.h: In constructor ‘pymol::Result<ResultT>::Result(type) [with ResultT = std::pair<float, float>]’:
layer0/Result.h:99:3: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
99 | Result(type r) : m_result(std::move(r)) {}
| ^~~~~~
layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::update()’:
layer2/ObjectSurface.cpp:494:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
494 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:493:13: note: in expansion of macro ‘PRINTFB’
493 | PRINTFB(I->G, FB_ObjectSurface, FB_Details)
| ^~~~~~~
layer2/ObjectVolume.cpp: In function ‘ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)’:
layer2/ObjectVolume.cpp:80:33: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
80 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
| ^~
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.13/Python.h:37,
from layer0/os_python.h:34,
from layer2/ObjectVolume.cpp:20:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)’ at layer2/ObjectVolume.cpp:79:5:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 46 and 301 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)’:
layer3/Executive.cpp:9017:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
9017 | " Remove: eliminated %d atoms in model \"%s\".\n",
| ^~
In file included from layer3/Executive.cpp:93:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 42 and 307 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9016:15: note: in expansion of macro ‘PRINTFB’
9016 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:11440:28: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11440 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
11441 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11440:17: note: directive argument in the range [1, 2147483647]
11440 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 560 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11439:15: note: in expansion of macro ‘PRINTF’
11439 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function ‘PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)’:
layer3/Executive.cpp:11521:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11521 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~
11522 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11521:15: note: directive argument in the range [1, 2147483647]
11521 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 38 and 556 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11520:13: note: in expansion of macro ‘PRINTF’
11520 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:11621:62: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=]
11621 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 306) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11620:17: note: in expansion of macro ‘PRINTF’
11620 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:11700:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11700 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~
11701 | name, nSet, rec->obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11700:15: note: directive argument in the range [1, 2147483647]
11700 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 44 and 562 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11699:13: note: in expansion of macro ‘PRINTF’
11699 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)’:
layer3/Executive.cpp:12242:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12242 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12243 | name, value2, obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12242:19: note: directive argument in the range [1, 2147483647]
12242 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12241:17: note: in expansion of macro ‘PRINTF’
12241 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12234:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12234 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12235 | name, value2, obj->Name ENDF(G);
| ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12233:17: note: in expansion of macro ‘PRINTF’
12233 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12213:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12213 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12213:11: note: in expansion of macro ‘PRINTF’
12213 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:12145:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12145 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
12146 | name, op.i4, rec->obj->Name ENDF(G);
| ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12144:23: note: in expansion of macro ‘PRINTF’
12144 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12113:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12113 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
12114 | name, value2, nObj, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12113:21: note: directive argument in the range [1, 2147483647]
12113 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12113:21: note: directive argument in the range [1, 2147483647]
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1338 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12112:19: note: in expansion of macro ‘PRINTF’
12112 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12110:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12110 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~ ~~~~
layer3/Executive.cpp:12110:21: note: directive argument in the range [1, 2147483647]
12110 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1320 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12109:19: note: in expansion of macro ‘PRINTF’
12109 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12177:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12177 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12178 | name, value2, rec->obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12177:25: note: directive argument in the range [1, 2147483647]
12177 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12176:23: note: in expansion of macro ‘PRINTF’
12176 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12169:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12169 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12170 | name, value2, rec->obj->Name ENDF(G);
| ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12168:23: note: in expansion of macro ‘PRINTF’
12168 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12073:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12073 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12073:11: note: in expansion of macro ‘PRINTF’
12073 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
layer3/PlugIOManager.cpp: In function ‘pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)’:
layer3/PlugIOManager.cpp:941:65: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
941 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
| ^~
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.13/Python.h:37,
from layer0/os_python.h:34,
from layer3/PlugIOManager.cpp:21:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)’ at layer3/PlugIOManager.cpp:940:7:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 58 and 313 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)’:
layer3/Executive.cpp:5952:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
5952 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 84 and 339 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5951:7: note: in expansion of macro ‘PRINTFB’
5951 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:5961:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
5961 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 311 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5960:7: note: in expansion of macro ‘PRINTFB’
5960 | PRINTFB(G, FB_Executive, FB_Details)
| ^~~~~~~
layer3/Executive.cpp:5952:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
5952 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 84 and 339 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5951:7: note: in expansion of macro ‘PRINTFB’
5951 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)’:
layer3/Executive.cpp:9381:67: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
9381 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 314 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9380:17: note: in expansion of macro ‘PRINTFB’
9380 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9393:59: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
9393 | " Unbond: %d bonds removed from model \"%s\".\n",
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 41 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9392:17: note: in expansion of macro ‘PRINTFB’
9392 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9368:53: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
9368 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 35 and 300 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9367:17: note: in expansion of macro ‘PRINTFB’
9367 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:12354:68: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
12354 | " Setting: %s unset for %d atoms in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 44 or more bytes (assuming 299) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12353:21: note: in expansion of macro ‘PRINTF’
12353 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12376:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12376 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~
layer3/Executive.cpp:12376:25: note: directive argument in the range [1, 2147483647]
12376 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 41 or more bytes (assuming 305) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12375:23: note: in expansion of macro ‘PRINTF’
12375 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12370:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12370 | " Setting: %s unset in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 32 or more bytes (assuming 287) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12369:23: note: in expansion of macro ‘PRINTF’
12369 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15489:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
15489 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ^~
15490 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~
layer3/Executive.cpp:15489:26: note: ‘sprintf’ output between 32 and 1057 bytes into a destination of size 1024
15489 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15490 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:11893:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11893 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11892:25: note: in expansion of macro ‘PRINTF’
11892 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11804:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11804 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
11805 | name, value, nObj, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11804:21: note: directive argument in the range [1, 2147483647]
11804 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:11804:21: note: directive argument in the range [1, 2147483647]
layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1084) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11803:19: note: in expansion of macro ‘PRINTF’
11803 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11801:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11801 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~ ~~~~~
layer3/Executive.cpp:11801:21: note: directive argument in the range [1, 2147483647]
11801 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1066) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11800:19: note: in expansion of macro ‘PRINTF’
11800 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11925:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11925 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
11926 | name, value, rec->obj->Name, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11925:25: note: directive argument in the range [1, 2147483647]
11925 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1330) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11924:23: note: in expansion of macro ‘PRINTF’
11924 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11918:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11918 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
11919 | name, value, rec->obj->Name ENDF(G);
| ~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1312) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11917:23: note: in expansion of macro ‘PRINTF’
11917 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11760:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11760 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~ ~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 21 or more bytes (assuming 1044) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11760:11: note: in expansion of macro ‘PRINTF’
11760 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function ‘void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)’:
layer3/Executive.cpp:14465:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
14465 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 73 and 328 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14464:7: note: in expansion of macro ‘PRINTFB’
14464 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:14460:36: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
14460 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 61 and 316 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14459:7: note: in expansion of macro ‘PRINTFB’
14459 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:14491:11: warning: ‘char* strcpy(char*, const char*)’ writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14491 | strcpy(rec->name, obj->Name);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
cc1plus: note: destination object is likely at address zero
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)’:
layer3/Executive.cpp:9681:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
9681 | " Executive: object %s created.\n", oDst->Name ENDFB(G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9680:3: note: in expansion of macro ‘PRINTFB’
9680 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)’:
layer3/Executive.cpp:2266:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
2266 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 36 and 546 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:2265:17: note: in expansion of macro ‘PRINTFB’
2265 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<std::vector<DiscardedRec> > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)’:
layer3/Executive.cpp:3523:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
3523 | " Warning: Invalid characters in '%s' have been replaced or stripped\n",
| ^~
3524 | name ENDFB(G);
| ~~~~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 67 and 322 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:3522:5: note: in expansion of macro ‘PRINTFB’
3522 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’:
layer3/Executive.cpp:5076:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
5076 | " Executive: skipping unrecognized object \"%s\" of type %d.\n",
| ^~
In function ‘int ExecutiveSetNamedEntries(PyMOLGlobals*, PyObject*, int, int, int)’,
inlined from ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’ at layer3/Executive.cpp:5706:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 321 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5075:11: note: in expansion of macro ‘PRINTFB’
5075 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’:
layer3/Executive.cpp:5101:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
5101 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
| ^~
In function ‘int ExecutiveSetNamedEntries(PyMOLGlobals*, PyObject*, int, int, int)’,
inlined from ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’ at layer3/Executive.cpp:5706:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 304 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5100:9: note: in expansion of macro ‘PRINTFB’
5100 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
contrib/champ/os_memory.c: In function ‘OSMemoryZero’:
contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
55 | while(count&&(((int)p)&mask)) {
| ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’:
contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
137 | hash=(int)rec;
| ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’:
contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
150 | hash=(int)rec;
| ^
I: pybuild base:311: /usr/bin/python3 setup.py build
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c: In function ‘write_psf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:782:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
782 | if (strlen(atoms[i].type) > fw) {
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function]
103 | static int fortread_4(void *dest, int n, int swap, FILE *fd) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function]
55 | static int fort_get_endian_reclen(int reclen, int word0, int word1,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function]
36 | static int fort_eat_recmark(FILE *ifp, int recmarklen) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function]
124 | static void swap8_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
271 | if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
273 | if(ok) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
411 | if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
| ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
413 | return ok;
| ^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
224 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
174 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
180 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
189 | for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
194 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
84 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
77 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
275 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
289 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
199 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
209 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
127 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
138 | fgets(line, LINESIZE, mol2->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
74 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(line, LINESIZE, fd); // Read and ignore the mol_name
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
82 | fgets(line, LINESIZE, fd); // Read the molecule info
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fgets(line, LINESIZE, fd); // Read and ignore the mol_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(line, LINESIZE, fd); // Read the charge_type
| ~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
435 | fscanf(file, " " DBLFMT, &prm->Charges[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
444 | fscanf(file, " " DBLFMT, &prm->Masses[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
510 | fscanf(file, " " DBLFMT, &prm->Rk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
517 | fscanf(file, " " DBLFMT, &prm->Req[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
524 | fscanf(file, " " DBLFMT, &prm->Tk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
531 | fscanf(file, " " DBLFMT, &prm->Teq[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
538 | fscanf(file, " " DBLFMT, &prm->Pk[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
545 | fscanf(file, " " DBLFMT, &prm->Pn[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
552 | fscanf(file, " " DBLFMT, &prm->Phase[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
559 | fscanf(file, " " DBLFMT, &prm->Solty[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
567 | fscanf(file, " " DBLFMT, &prm->Cn1[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
575 | fscanf(file, " " DBLFMT, &prm->Cn2[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
756 | fscanf(file, " " DBLFMT, &prm->HB12[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
763 | fscanf(file, " " DBLFMT, &prm->HB6[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
771 | fscanf(file, " " DBLFMT, &H[i]);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
853 | fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
854 | &prm->Box[0], &prm->Box[1], &prm->Box[2]);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:23: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
867 | fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
868 | &prm->Natcap, &prm->Cutcap,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~
869 | &prm->Xcap, &prm->Ycap, &prm->Zcap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_readline’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:279:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
279 | for (i = 0; i < strlen(line); ++i) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
233 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
247 | fread(brick, sizeof(char), 512, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fscanf(fd, "%3s", keyWord);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
86 | fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
93 | fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
100 | fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fread(fileHeader, sizeof(short), 19, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
109 | fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
110 | &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
123 | fscanf(fd, " %s %f", keyWord, &prod);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
128 | fscanf(fd, " %s %f", keyWord, &plus);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
135 | fscanf(fd, " %s %f", keyWord, &sigma);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
970 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
971 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1113 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1114 | fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1511 | fread(skip, 1, 8, fp);
| ^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
619 | fscanf(data->file, "%*s %f %f %f", &x, &y, &z);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
282 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
150 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
71 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
75 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
103 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable]
596 | molfile_qm_hessian_t *hessian_data;
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘count_orbitals’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1165 | fscanf(data->file, " Ene= %f\n", &orbenergy);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1166 | fscanf(data->file, " Spin= %s\n", spin);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1167 | fscanf(data->file, " Occup= %f\n", &occu);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
840 | fgets(readbuf, 1024, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘open_molden_read’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
224 | fscanf(data->file, "%d", &natm);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
426 | fgets(buf, n, mf->f);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_structure’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:350:7: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
350 | strncpy(atom->type, atname, sizeof(atom->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:351:7: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
351 | strncpy(atom->name, atname, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:317:7: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
317 | strncpy(atom->name, atname, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:326:7: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 1023 [-Wstringop-truncation]
326 | strncpy(data->atoms[i].type, atname, sizeof(data->atoms[i].type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
326 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
339 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
344 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
349 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
363 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
373 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
266 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
268 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
272 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
295 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
305 | fgets(line, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
169 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
179 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
182 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
210 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
213 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
224 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
226 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
230 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
234 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
245 | fgets(line, LINESIZE, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
127 | sprintf(atom->resname, "%d", resid);
| ^~
In function ‘read_car_structure_line’,
inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
127 | sprintf(atom->resname, "%d", resid);
| ^~~~
In file included from /usr/include/stdio.h:970,
from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
In function ‘sprintf’,
inlined from ‘read_car_structure_line’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:5,
inlined from ‘read_car_structure’ at contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:277:12:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 8
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
239 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
242 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
238 | for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
150 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
71 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
75 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
81 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
103 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
111 | static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
304 | fgets(symData, 81, fd);
| ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
360 | strncpy(tmptype, atom->type, sizeof(atom->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
232 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
246 | for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
249 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
256 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
195 | for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
198 | if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
203 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
73 | for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable]
48 | double timesteprst;
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
67 | fgets(title, 82, fd);
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
70 | fgets(line, 82, fd);
| ^~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
91 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
116 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
132 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
149 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
155 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
161 | fgets(line, 80, infile); //one more read to keep us in sync
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
170 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
217 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
256 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
283 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
228 | for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
233 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
237 | for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
252 | for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘open_vaspxdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
89 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
97 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
111 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
121 | fgets(lineptr, LINESIZE, poscar);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:31:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:144:5: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 52 [-Wstringop-truncation]
144 | strncpy(numstr, record + 30, 8);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:149:5: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 44 [-Wstringop-truncation]
149 | strncpy(numstr+10, record + 38, 8);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:154:5: warning: ‘__builtin_strncpy’ output may be truncated copying 8 bytes from a string of length 36 [-Wstringop-truncation]
154 | strncpy(numstr+20, record + 46, 8);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
159 | strncpy(numstr+30, record + 54, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
164 | strncpy(numstr+40, record + 60, 6);
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
1006 | static int have_keyline(FILE *file, const char *keystring1,
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: ‘goto_keyline’ defined but not used [-Wunused-function]
962 | static int goto_keyline(FILE *file, ...) {
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: ‘eatwhitelines’ defined but not used [-Wunused-function]
846 | static void eatwhitelines(FILE *file) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: ‘eatline’ defined but not used [-Wunused-function]
835 | static void eatline(FILE * fd, int n)
| ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
711 | static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: ‘angular_momentum_expon’ defined but not used [-Wunused-function]
540 | static void angular_momentum_expon(int *ang_mom_expon,
| ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
507 | static void del_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
490 | static void replace_wavefunction(qm_timestep_t *ts, int n) {
| ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: ‘add_wavefunction’ defined but not used [-Wunused-function]
471 | static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
| ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: ‘init_qmdata’ defined but not used [-Wunused-function]
437 | static qmdata_t* init_qmdata() {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘read_pdb_structure’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:299:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 70 [-Wstringop-truncation]
299 | strncpy(name, record + 12, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:304:3: warning: ‘__builtin_strncpy’ output may be truncated copying 1 byte from a string of length 66 [-Wstringop-truncation]
304 | strncpy(altloc, record + 16, 1);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:308:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 65 [-Wstringop-truncation]
308 | strncpy(resname, record + 17, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:317:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 60 [-Wstringop-truncation]
317 | strncpy(resid, record + 22, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:159:5: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 28 [-Wstringop-truncation]
159 | strncpy(numstr+30, record + 54, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:164:5: warning: ‘__builtin_strncpy’ output may be truncated copying 6 bytes from a string of length 22 [-Wstringop-truncation]
164 | strncpy(numstr+40, record + 60, 6);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:330:5: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 10 [-Wstringop-truncation]
330 | strncpy(segname, record + 72, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:339:5: warning: ‘__builtin_strncpy’ output may be truncated copying 2 bytes from a string of length 6 [-Wstringop-truncation]
339 | strncpy(elementsymbol, record + 76, 2);
| ^
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
139 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
144 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘open_vaspxml_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
86 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
92 | fgets(lineptr, LINESIZE, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable]
103 | int i, numatoms;
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h: In function ‘open_pdb_read’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘write_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:190:5: warning: ‘__builtin_strncpy’ output may be truncated copying 9 bytes from a string of length 32 [-Wstringop-truncation]
190 | strncpy(date, record + 50, 9);
| ^
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:206:55: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
206 | if (fwrite(tmp, sizeof(double), 3*n, namdbin->fd) != 3*n) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/readpdb.h:200:5: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 20 [-Wstringop-truncation]
200 | strncpy(pdbcode, record + 62, 4);
| ^
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
78 | fread(&filen, sizeof(namdbin_int32), 1, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
519 | if (rc != iov[i].iov_len)
| ^~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
65 | static void swap8_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
46 | static void swap4_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable]
443 | int i, uid;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable]
484 | int i, count, atomdata, pos, idx, xyzcount, j;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable]
503 | char oldChain[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
803 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable]
807 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
811 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable]
822 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable]
884 | int test = parser->nbonds + bnum;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
984 | int bondTable[32];
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable]
988 | int i, pos, j, k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
991 | char modelNum[8];
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable]
1002 | molfile_atom_t * atom;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable]
1409 | FILE* fd;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
243 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
252 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
328 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
346 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
355 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
419 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
175 | fgets(readbuf, 1023, cube->fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
181 | fgets(readbuf, 1023, cube->fd); // skip second header line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
326 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
337 | fgets(readbuf, 1023, cube->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
339 | fscanf(cube->fd, "%d", &cube->nsets);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
344 | fscanf(cube->fd, "%d", &orb);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
349 | fgets(readbuf, 1023, cube->fd); // gobble up rest of line
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
194 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
203 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
59 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_structure’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:730:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
730 | if (len > sizeof(name)) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c: In function ‘read_mmtk_cdf_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c:1060:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
1060 | for (i=0; i<(3 * mmtk->atom_numberdim); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
286 | fread(datablock, total * sizeof(float), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_read_bonds’:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:147:48: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
147 | sprintf(message, "vtfplugin:%d: error: %s: \"%s\"\n",
| ^~
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function ‘vtf_open_file_read’:
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:538:9: warning: ‘__builtin___strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
538 | strncat(msg, keyword, 200);
| ^
contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:629:7: warning: ‘__builtin___strncat_chk’ output may be truncated copying 200 bytes from a string of length 254 [-Wstringop-truncation]
629 | strncat(msg, keyword, 200);
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h: In function ‘fio_readv’:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:519:14: warning: comparison of integer expressions of different signedness: ‘fio_size_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
519 | if (rc != iov[i].iov_len)
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdheader’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:191:57: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
191 | } else if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:204:54: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
204 | if (input_integer[0] == 84 && input_integer[1] == dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:222:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
222 | if (input_integer[0] != dcdcordmagic) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:399:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
399 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:416:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
416 | if ((input_integer[0]+input_integer[1]) != ((*N)-(*NAMNF))*4) {
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:621:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
621 | if (tmpbuf[i] != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:625:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
625 | if ((tmpbuf[2*i]+tmpbuf[2*i+1]) != sizeof(float)*N) return DCD_BADFORMAT;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable]
546 | fio_size_t readlen; /* number of bytes actually read */
| ^~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
96 | static void swap2_aligned(void *v, long ndata) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
32 | static void swap2_unaligned(void *v, long ndata) {
| ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
609 | static int fio_write_str(fio_fd fd, const char *str) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
605 | static int fio_read_int32(fio_fd fd, int *i) {
| ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
459 | static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
96 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
104 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
119 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
131 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
153 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
162 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
171 | fgets(line, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’:
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
64 | fread(magicchar,sizeof(char),4,fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fread(&igarb,sizeof(int),1,fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c: In function ‘read_tinker_structure’:
contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c:103:5: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
103 | strncpy(atom->name, buffer, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
371 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
306 | fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
102 | fread(&headersize, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
78 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
204 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
257 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
275 | fgets(buf, 85, file);
| ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
289 | fscanf(file, " %d", &cur);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parmstruct* read_parm7_header(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
368 | fgets(sdum, 512, file);
| ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
371 | fscanf(file, "%s\n", sdum); // "%FLAG"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
378 | fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
385 | fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
| ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
399 | fgets(prm->title, sizeof(prm->title), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
427 | fgets(sdum, sizeof(sdum), file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
439 | fscanf(file,parm7,
| ~~~~~~^~~~~~~~~~~~
440 | &prm->Natom, &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
441 | &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
442 | &prm->Jparm, &prm->Nparm);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
443 | fscanf(file, parm7,
| ~~~~~~^~~~~~~~~~~~~
444 | &prm->Nnb, &prm->Nres, &prm->Mbona, &prm->Mtheta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
445 | &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
446 | &prm->Natyp, &prm->Nphb);
| ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
447 | fscanf(file, parm7, &prm->Ifpert, &prm->Nbper, &prm->Ngper,
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
448 | &prm->Ndper, &prm->Mbper, &prm->Mgper, &prm->Mdper,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
449 | &prm->IfBox, &prm->Nmxrs, &prm->IfCap);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
451 | fscanf(file,"%8d",&prm->Numextra); //BB
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
87 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
97 | fscanf(file, "%s\n", buf);
| ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
288 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
297 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
365 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
387 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
395 | fgets(nextline, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
455 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
241 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
250 | fgets(line, LINESIZE, bgf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
72 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:23: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
714 | sprintf(sub, "%03x/", i);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:22: note: directive argument in the range [0, 2147483646]
714 | sprintf(sub, "%03x/", i);
| ^~~~~~~
In file included from /usr/include/stdio.h:970,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
In function ‘int sprintf(char*, const char*, ...)’,
inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:9:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘void DDmkdir(const std::string&, mode_t, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:30: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
722 | sprintf(subsub, "%03x", j);
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:29: note: directive argument in the range [0, 2147483646]
722 | sprintf(subsub, "%03x", j);
| ^~~~~~
In function ‘int sprintf(char*, const char*, ...)’,
inlined from ‘void DDmkdir(const std::string&, mode_t, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:13:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
69 | fread(intHeader, sizeof(int), 5, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
82 | fread(floatHeader, sizeof(float), 6, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
292 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
295 | if (NULL == fgets(fbuffer, 1024, data->file))
| ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
669 | fgets(fbuffer, 1024, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
554 | fgets(fbuffer, 1024, data->file);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:362:5: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
362 | strncpy(atom->name, buf, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:267:5: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 4095 [-Wstringop-truncation]
267 | strncpy(atom->name, buf, sizeof(atom->name));
| ^
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable]
459 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable]
1407 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable]
1541 | int i,j,k;
| ^
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
675 | sprintf(answer, "%03x/", d1);
| ^
In function ‘int sprintf(char*, const char*, ...)’,
inlined from ‘std::string DDreldir(const std::string&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:13,
inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘std::string framefile(const std::string&, size_t, size_t, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:35: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~
In function ‘std::string DDreldir(const std::string&, int, int)’,
inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:29: note: directive argument in the range [0, 2147483646]
673 | sprintf(answer, "%03x/%03x/", d1, d2);
| ^~~~~~~~~~~~
In function ‘int sprintf(char*, const char*, ...)’,
inlined from ‘std::string DDreldir(const std::string&, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:13,
inlined from ‘std::string framefile(const std::string&, size_t, size_t, int, int)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:779:23:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9
30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
31 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
32 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1629 | fread (&len, sizeof(int), 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
1631 | fread (str, len, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2057 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2063 | fread (ptr, 1, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2069 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2075 | fread (ptr, 2, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2081 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2087 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2093 | fread (ptr, 4, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
2099 | fread (ptr, 8, 1, fp);
| ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘char* recreate_command_line(int, char**)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1334:11: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=]
1334 | line[0] = '\0';
| ~~~~~~~~^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1333:26: note: destination object of size 0 allocated by ‘malloc’
1333 | line = (char *) malloc (sizeof(char) * len);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
238 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
408 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
442 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
444 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
446 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
448 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
450 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
473 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
508 | fgets(readbuf, 256, xsf->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
160 | static int get_pte_idx_from_string(const char *label) {
| ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c: In function ‘read_xyz_structure’:
contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:133:7: warning: ‘__builtin_strncpy’ output may be truncated copying 16 bytes from a string of length 1023 [-Wstringop-truncation]
133 | strncpy(atom->name, buffer, sizeof(atom->name));
| ^
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable]
1904 | int last_ctnumber = -1;
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable]
166 | char *name, *type;
| ^~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [8, 12] into destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [16, 20] into destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [24, 28] into destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [32, 36] into destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [40, 44] into destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1497:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:11: note: at offset [48, 52] into destination object ‘nx’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [8, 12] into destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [16, 20] into destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [24, 28] into destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [32, 36] into destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [40, 44] into destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1498:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:15: note: at offset [48, 52] into destination object ‘ny’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 4 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [8, 12] into destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [16, 20] into destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [24, 28] into destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [32, 36] into destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [40, 44] into destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
In function ‘void swap4_unaligned(void*, long int)’,
inlined from ‘void {anonymous}::Blob::get_float(float*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:615:36,
inlined from ‘void {anonymous}::Blob::get_int32(int32_t*) const’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:606:10,
inlined from ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’ at contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1499:24:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:54:16: warning: writing 8 bytes into a region of size 0 [-Wstringop-overflow=]
54 | dataptr[0] = dataptr[3];
| ~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘int handle_posn_momentum_v1({anonymous}::BlobMap&, uint32_t, bool, const float*, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:1494:19: note: at offset [48, 52] into destination object ‘nz’ of size 4
1494 | int32_t nx, ny, nz;
| ^~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:109:3: warning: ‘__builtin_strncpy’ output may be truncated copying 80 bytes from a string of length 81 [-Wstringop-truncation]
109 | strncpy(tmp, record, PQR_RECORD_LENGTH);
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘read_pqr_structure’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:137:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 68 [-Wstringop-truncation]
137 | strncpy(name, record+12, 4); name[4] = 0;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:138:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 63 [-Wstringop-truncation]
138 | strncpy(resname, record+17, 4); resname[4] = 0;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:139:3: warning: ‘__builtin_strncpy’ output may be truncated copying 1 byte from a string of length 59 [-Wstringop-truncation]
139 | strncpy(chain, record+21, 1); chain[1] = 0;
| ^
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:140:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4 bytes from a string of length 58 [-Wstringop-truncation]
140 | strncpy(resid, record+22, 4); resid[4] = 0;
| ^
layer0/Texture.cpp: In function ‘bool TextureIsCharTextured(PyMOLGlobals*, int, float*)’:
layer0/Texture.cpp:130:9: warning: unused variable ‘use_shader’ [-Wunused-variable]
130 | short use_shader = (short) SettingGetGlobal_b(G, cSetting_use_shaders);
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
240 | fgets(readbuf, 13, edm->fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
44 | fgets(readbuf, 1024, fd); // go on to next line
| ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
79 | fread(&dataBegin, sizeof(int), 1, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘angular_momentum_expon’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:545:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
545 | for (i=0; i<strlen(ang_mom_str); i++) {
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
1106 | char word[3][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
2264 | char word[7][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
3573 | char word[6][BUFSIZ];
| ^~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
840 | fgets(readbuf, 1024, fd);
| ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: ‘print_input_data’ defined but not used [-Wunused-function]
1002 | static void print_input_data(qmdata_t *data) {
| ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
133 | static int get_pte_idx(const char *label)
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
109 | static float get_pte_vdw_radius(const int idx)
| ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
102 | static float get_pte_mass(const int idx)
| ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
95 | static const char *get_pte_label(const int idx)
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
1097 | static void whereami(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
1077 | static void thisline(FILE *file) {
| ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
1028 | static int fpexpftoc(char *ftocstr) {
| ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
901 | static char *strtoupper(char *s) {
| ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
895 | static int iswhiteline(char *s) {
| ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
585 | static void print_matrix4(const float mat[16]) {
| ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘read_gamess_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:615:3: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
615 | strncpy(sys_data->basis_string, data->basis_string,
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:620:3: warning: ‘__builtin_strncpy’ output may be truncated copying 4096 bytes from a string of length 8191 [-Wstringop-truncation]
620 | strncpy(sys_data->runtitle, data->runtitle, sizeof(sys_data->runtitle));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:621:3: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
621 | strncpy(sys_data->geometry, data->geometry, sizeof(sys_data->geometry));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:622:3: warning: ‘__builtin_strncpy’ output may be truncated copying 81 bytes from a string of length 8191 [-Wstringop-truncation]
622 | strncpy(sys_data->version_string, data->version_string,
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_coordinates’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
1618 | strncpy(atm->type, atname, sizeof(atm->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1618:5: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_options’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1422:5: warning: ‘__builtin___strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
1422 | strncat(data->basis_string, &data->gbasis[3], 1);
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1411:5: warning: ‘__builtin___strncat_chk’ output may be truncated copying 1 byte from a string of length 9 [-Wstringop-truncation]
1411 | strncat(data->basis_string, &data->gbasis[2], 1);
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_input_structure’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1682:5: warning: ‘__builtin_strncpy’ output may be truncated copying 11 bytes from a string of length 8191 [-Wstringop-truncation]
1682 | strncpy(atm->type, atname, sizeof(atm->type));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1981:3: warning: ‘__builtin_strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
1981 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_contrl_firefly’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1818:3: warning: ‘__builtin_strncpy’ specified bound 8192 equals destination size [-Wstringop-truncation]
1818 | strncpy(data->geometry, trimright(temp+7), sizeof(data->geometry));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_proc_mem.isra’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1279:5: warning: ‘__builtin_strncpy’ output may be truncated copying 256 bytes from a string of length 8191 [-Wstringop-truncation]
1279 | strncpy(data->memory,&word[2][0],sizeof(data->memory));
| ^
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1272:5: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
1272 | strncpy(data->memory,trimright(temp),sizeof(data->memory));
| ^
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘get_traj_frame.isra’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:819:5: warning: ‘__builtin_strncpy’ output may be truncated copying 10 bytes from a string of length 10 [-Wstringop-truncation]
819 | strncpy((*atoms)[i].type, (*atoms)[indexmap[i]].type, 10);
| ^
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
278 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
297 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
319 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
357 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
223 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
241 | fgets(line, LINESIZE, mdf->file);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
164 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
176 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
183 | fgets(line, LINESIZE, fd);
| ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
186 | fread(line3, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’
284 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
285 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’
291 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’
305 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
306 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’
307 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’
311 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’
313 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’
318 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
319 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’
320 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’
328 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
329 | fread(line, 1, 80, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’
330 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’
354 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
355 | fread(vertex, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’
356 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’
357 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
358 | fread(access, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’
359 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’
360 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
361 | fread(normal, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’
362 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’
371 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
372 | fread(triangle, 3 * sizeof(int), ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’
373 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’
374 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
375 | fread(properties, 3 * sizeof(float), nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’
394 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
395 | fread(striangle, sizeof(short), 3 * ntriangles, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’
396 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
280 | #define TRASH fread(trash, 4, 1, infile)
| ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’
397 | TRASH;
| ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
398 | fread(properties, sizeof(float), 3 * nvert, infile);
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’:
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ^~~~~~~~~
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
38 | std::fscanf(fp, "%*zu%zu", &vmRSS);
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer1/SymOp.cpp: In member function ‘std::string pymol::SymOp::to_string() const’:
layer1/SymOp.cpp:37:32: warning: ‘%d’ directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
37 | std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
| ^~~~~~~~~~~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14/cstdio:42,
from /usr/include/c++/14/ext/string_conversions.h:45,
from /usr/include/c++/14/bits/basic_string.h:4154,
from /usr/include/c++/14/string:54,
from layer1/SymOp.h:9,
from layer1/SymOp.cpp:7:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘std::string pymol::SymOp::to_string() const’ at layer1/SymOp.cpp:37:16:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 6 and 17 bytes into a destination of size 8
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
In file included from include/tnt/tnt.h:45,
from layer0/ccealignmodule.cpp:39:
In member function ‘void TNT::Array1D<T>::set_(T*, T*, const T&) [with T = double]’,
inlined from ‘TNT::Array1D<T>::Array1D(int, const T&) [with T = double]’ at include/tnt/tnt_array1d.h:119:6,
inlined from ‘PyObject* findBest(pcePoint, pcePoint, pathCache, int, int, int)’ at layer0/ccealignmodule.cpp:506:28:
include/tnt/tnt_array1d.h:283:20: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744056529682432 and 18446744073709551608 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
283 | *p = a;
| ~~~^~~
layer1/Ray.cpp: In function ‘void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)’:
layer1/Ray.cpp:1535:20: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
1535 | "%s"
| ^~
......
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~
layer1/Ray.cpp:1530:18: note: ‘sprintf’ output between 116 and 2993 bytes into a destination of size 1024
1530 | sprintf(buffer,
| ~~~~~~~^~~~~~~~
1531 | "Transform {\n"
| ~~~~~~~~~~~~~~~
1532 | " translation %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1533 | " rotation %8.6f %8.6f %8.6f %8.6f\n"
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1534 | " children [\n"
| ~~~~~~~~~~~~~~~
1535 | "%s"
| ~~~~
1536 | " ]\n"
| ~~~~~~
1537 | "}\n",
| ~~~~~~
1538 | vert2[0] - mid[0],
| ~~~~~~~~~~~~~~~~~~
1539 | vert2[1] - mid[1],
| ~~~~~~~~~~~~~~~~~~
1540 | vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
from /usr/include/c++/14/bits/specfun.h:43,
from /usr/include/c++/14/cmath:3898,
from /usr/include/c++/14/math.h:36,
from layer0/os_std.h:24,
from layer1/Scene.cpp:18:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = float; typename decay<_Tp2>::type = float]’:
layer1/Scene.cpp:1485:24: required from here
1485 | return std::make_pair(clip.m_front, clip.m_back);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
1132 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
layer2/ObjectMolecule.cpp: In function ‘CoordSet* ObjectMoleculeMOLStr2CoordSet.constprop(PyMOLGlobals*, const char*, AtomInfoType**, const char**)’:
layer2/ObjectMolecule.cpp:7603:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
7603 | " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
| ^~ ~~~~~~~
In file included from layer2/ObjectMolecule.cpp:49:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 34 and 289 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:7602:3: note: in expansion of macro ‘PRINTFB’
7602 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
layer2/ObjectMolecule.cpp: In member function ‘virtual void ObjectMolecule::update()’:
layer2/ObjectMolecule.cpp:10629:82: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
10629 | " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 68 and 333 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMolecule.cpp:10628:13: note: in expansion of macro ‘PRINTFB’
10628 | PRINTFB(G, FB_ObjectMolecule, FB_Blather)
| ^~~~~~~
layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)’:
layer2/ObjectMolecule.cpp:10755:43: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
10755 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~
10756 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~
layer2/ObjectMolecule.cpp:10755:21: note: directive argument in the range [-2147483647, 2147483647]
10755 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp:10755:14: note: ‘sprintf’ output between 78 and 2036 bytes into a destination of size 1024
10755 | sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
10756 | buffer, v[0], v[1], v[2], state + 1, mode, 0);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/SceneMouse.cpp: In function ‘void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)’:
layer1/SceneMouse.cpp:453:32: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
453 | " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G);
| ^~ ~~~~
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14/cstdio:42,
from /usr/include/c++/14/ext/string_conversions.h:45,
from /usr/include/c++/14/bits/basic_string.h:4154,
from /usr/include/c++/14/string:54,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from include/pymol/zstring_view.h:12,
from layer1/SceneMouse.h:4,
from layer1/SceneMouse.cpp:1:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)’ at layer1/SceneMouse.cpp:452:11:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output 21 or more bytes (assuming 276) into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘void ObjectMapDump(const ObjectMap*, const char*, int, int)’:
layer2/ObjectMap.cpp:5983:24: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
5983 | " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
| ^~
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.12/Python.h:24,
from layer0/os_python.h:34,
from layer2/ObjectMap.cpp:21:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘void ObjectMapDump(const ObjectMap*, const char*, int, int)’ at layer2/ObjectMap.cpp:5982:5:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output 30 or more bytes (assuming 285) into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule2.cpp: In function ‘int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)’:
layer2/ObjectMolecule2.cpp:335:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
335 | " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
| ^~
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.12/Python.h:24,
from layer0/os_python.h:34,
from layer2/ObjectMolecule2.cpp:24:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)’ at layer2/ObjectMolecule2.cpp:334:7:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 26 and 291 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1717:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
1717 | " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
| ^~
In file included from /usr/include/stdio.h:970,
from /usr/include/c++/14/cstdio:42,
from /usr/include/c++/14/ext/string_conversions.h:45,
from /usr/include/c++/14/bits/basic_string.h:4154,
from /usr/include/c++/14/string:54,
from layer3/Selector.cpp:20:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’ at layer3/Selector.cpp:1716:19:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 59 and 324 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2962:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2962 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2961:5,
inlined from ‘ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4804:25,
inlined from ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’ at layer2/ObjectMap.cpp:4836:28:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2971:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2971 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2970:5,
inlined from ‘ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4804:25,
inlined from ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’ at layer2/ObjectMap.cpp:4836:28:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2977:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
2977 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:2976:5,
inlined from ‘ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4804:25,
inlined from ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’ at layer2/ObjectMap.cpp:4836:28:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’:
layer2/ObjectMap.cpp:3059:22: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
3059 | " PHIStrToMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:3058:5,
inlined from ‘ObjectMap* ObjectMapReadPHIStr(PyMOLGlobals*, ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4804:25,
inlined from ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’ at layer2/ObjectMap.cpp:4836:28:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:4291:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4291 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4290:3:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:4291:18: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
4291 | " ObjectMap: %s\n", cc ENDFB(I->G);
| ^~ ~~
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’ at layer2/ObjectMap.cpp:4290:3:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function ‘void EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)’:
layer3/Editor.cpp:1935:29: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
1935 | " Editor: grabbing (%s).", name ENDFB(G);
| ^~ ~~~~
In file included from layer3/Editor.cpp:42:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Editor.cpp:1934:7: note: in expansion of macro ‘PRINTFB’
1934 | PRINTFB(G, FB_Editor, FB_Blather)
| ^~~~~~~
layer3/Editor.cpp: In function ‘void EditorDefineExtraPks(PyMOLGlobals*)’:
layer3/Editor.cpp:337:29: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
337 | sprintf(buffer, "(byres %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:337:12: note: ‘sprintf’ output between 9 and 264 bytes into a destination of size 256
337 | sprintf(buffer, "(byres %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:339:31: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
339 | sprintf(buffer, "(bychain %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:339:12: note: ‘sprintf’ output between 11 and 266 bytes into a destination of size 256
339 | sprintf(buffer, "(bychain %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:341:32: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
341 | sprintf(buffer, "(byobject %s)", name);
| ^~ ~~~~
layer3/Editor.cpp:341:12: note: ‘sprintf’ output between 12 and 267 bytes into a destination of size 256
341 | sprintf(buffer, "(byobject %s)", name);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’:
layer2/ObjectSlice.cpp:639:42: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
639 | "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
| ^~
In file included from layer2/ObjectSlice.cpp:44:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 51 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:638:9: note: in expansion of macro ‘PRINTFB’
638 | PRINTFB(I->G, FB_ObjectSlice, FB_Errors)
| ^~~~~~~
layer2/ObjectSlice.cpp:650:39: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
650 | " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 28 and 283 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSlice.cpp:649:11: note: in expansion of macro ‘PRINTFB’
649 | PRINTFB(I->G, FB_ObjectSlice, FB_Blather)
| ^~~~~~~
layer2/ObjectMesh.cpp: In member function ‘virtual void ObjectMesh::update()’:
layer2/ObjectMesh.cpp:503:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
503 | "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
| ^~
In file included from layer2/ObjectMesh.cpp:41:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 305 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:502:9: note: in expansion of macro ‘PRINTFB’
502 | PRINTFB(I->G, FB_ObjectMesh, FB_Errors)
| ^~~~~~~
layer2/ObjectMesh.cpp:536:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
536 | " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 27 and 282 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:535:13: note: in expansion of macro ‘PRINTFB’
535 | PRINTFB(G, FB_ObjectMesh, FB_Details)
| ^~~~~~~
layer2/ObjectMesh.cpp: In function ‘void ObjectMeshDump(ObjectMesh*, const char*, int, int)’:
layer2/ObjectMesh.cpp:330:27: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
330 | " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output 31 or more bytes (assuming 286) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectMesh.cpp:329:7: note: in expansion of macro ‘PRINTFB’
329 | PRINTFB(I->G, FB_ObjectMesh, FB_Actions)
| ^~~~~~~
layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’:
layer2/ObjectSurface.cpp:269:30: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
269 | " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
| ^~
In file included from layer2/ObjectSurface.cpp:45:
layer0/Feedback.h:274:15: note: ‘snprintf’ output 34 or more bytes (assuming 289) into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:268:7: note: in expansion of macro ‘PRINTFB’
268 | PRINTFB(I->G, FB_ObjectSurface, FB_Actions)
| ^~~~~~~
In file included from layer1/Setting.h:27,
from layer1/PyMOLObject.h:25,
from layer3/Executive.h:25,
from layer3/Executive.cpp:37:
layer0/Result.h: In constructor ‘pymol::Result<ResultT>::Result(type) [with ResultT = std::pair<float, float>]’:
layer0/Result.h:99:3: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
99 | Result(type r) : m_result(std::move(r)) {}
| ^~~~~~
layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::update()’:
layer2/ObjectSurface.cpp:494:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
494 | " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer2/ObjectSurface.cpp:493:13: note: in expansion of macro ‘PRINTFB’
493 | PRINTFB(I->G, FB_ObjectSurface, FB_Details)
| ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)’:
layer3/Executive.cpp:9017:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
9017 | " Remove: eliminated %d atoms in model \"%s\".\n",
| ^~
In file included from layer3/Executive.cpp:93:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 42 and 307 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9016:15: note: in expansion of macro ‘PRINTFB’
9016 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:11440:28: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11440 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
11441 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11440:17: note: directive argument in the range [1, 2147483647]
11440 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 560 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11439:15: note: in expansion of macro ‘PRINTF’
11439 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function ‘PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)’:
layer3/Executive.cpp:11521:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11521 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~
11522 | name, nSet, obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11521:15: note: directive argument in the range [1, 2147483647]
11521 | " Getting: %s for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 38 and 556 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11520:13: note: in expansion of macro ‘PRINTF’
11520 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:11621:62: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 217 [-Wformat-truncation=]
11621 | " Setting: %s set for %d bonds in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 306) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11620:17: note: in expansion of macro ‘PRINTF’
11620 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:11700:26: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
11700 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~
11701 | name, nSet, rec->obj->Name ENDF(G);
| ~~~~
layer3/Executive.cpp:11700:15: note: directive argument in the range [1, 2147483647]
11700 | " Setting: %s unset for %d bonds in object \"%s\".\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 44 and 562 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11699:13: note: in expansion of macro ‘PRINTF’
11699 | PRINTF
| ^~~~~~
layer2/ObjectVolume.cpp: In function ‘ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)’:
layer2/ObjectVolume.cpp:80:33: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
80 | "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
| ^~
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.12/Python.h:24,
from layer0/os_python.h:34,
from layer2/ObjectVolume.cpp:20:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)’ at layer2/ObjectVolume.cpp:79:5:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 46 and 301 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)’:
layer3/Executive.cpp:12242:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12242 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12243 | name, value2, obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12242:19: note: directive argument in the range [1, 2147483647]
12242 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12241:17: note: in expansion of macro ‘PRINTF’
12241 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12234:30: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12234 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12235 | name, value2, obj->Name ENDF(G);
| ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12233:17: note: in expansion of macro ‘PRINTF’
12233 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12213:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12213 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12213:11: note: in expansion of macro ‘PRINTF’
12213 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:12145:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12145 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
12146 | name, op.i4, rec->obj->Name ENDF(G);
| ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12144:23: note: in expansion of macro ‘PRINTF’
12144 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12113:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12113 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
12114 | name, value2, nObj, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12113:21: note: directive argument in the range [1, 2147483647]
12113 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12113:21: note: directive argument in the range [1, 2147483647]
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1338 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12112:19: note: in expansion of macro ‘PRINTF’
12112 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12110:32: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12110 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~ ~~~~
layer3/Executive.cpp:12110:21: note: directive argument in the range [1, 2147483647]
12110 | " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1320 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12109:19: note: in expansion of macro ‘PRINTF’
12109 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12177:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12177 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
12178 | name, value2, rec->obj->Name, state + 1 ENDF(G);
| ~~~~
layer3/Executive.cpp:12177:25: note: directive argument in the range [1, 2147483647]
12177 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12176:23: note: in expansion of macro ‘PRINTF’
12176 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12169:36: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12169 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
12170 | name, value2, rec->obj->Name ENDF(G);
| ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12168:23: note: in expansion of macro ‘PRINTF’
12168 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12073:29: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
12073 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~ ~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12073:11: note: in expansion of macro ‘PRINTF’
12073 | PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function ‘bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)’:
layer3/Executive.cpp:5952:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
5952 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 84 and 339 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5951:7: note: in expansion of macro ‘PRINTFB’
5951 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:5961:43: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
5961 | " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 311 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5960:7: note: in expansion of macro ‘PRINTFB’
5960 | PRINTFB(G, FB_Executive, FB_Details)
| ^~~~~~~
layer3/Executive.cpp:5952:46: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
5952 | " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 84 and 339 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5951:7: note: in expansion of macro ‘PRINTFB’
5951 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/PlugIOManager.cpp: In function ‘pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)’:
layer3/PlugIOManager.cpp:941:65: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
941 | " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
| ^~
In file included from /usr/include/stdio.h:970,
from /usr/include/python3.12/Python.h:24,
from layer0/os_python.h:34,
from layer3/PlugIOManager.cpp:21:
In function ‘int snprintf(char*, size_t, const char*, ...)’,
inlined from ‘pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)’ at layer3/PlugIOManager.cpp:940:7:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 58 and 313 bytes into a destination of size 255
68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
69 | __glibc_objsize (__s), __fmt,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
70 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)’:
layer3/Executive.cpp:9381:67: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
9381 | " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 314 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9380:17: note: in expansion of macro ‘PRINTFB’
9380 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9393:59: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
9393 | " Unbond: %d bonds removed from model \"%s\".\n",
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 41 and 306 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9392:17: note: in expansion of macro ‘PRINTFB’
9392 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp:9368:53: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
9368 | " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 35 and 300 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9367:17: note: in expansion of macro ‘PRINTFB’
9367 | PRINTFB(G, FB_Editor, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:12354:68: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
12354 | " Setting: %s unset for %d atoms in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 44 or more bytes (assuming 299) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12353:21: note: in expansion of macro ‘PRINTF’
12353 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12376:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12376 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~
layer3/Executive.cpp:12376:25: note: directive argument in the range [1, 2147483647]
12376 | " Setting: %s unset in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 41 or more bytes (assuming 305) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12375:23: note: in expansion of macro ‘PRINTF’
12375 | PRINTF
| ^~~~~~
layer3/Executive.cpp:12370:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
12370 | " Setting: %s unset in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 32 or more bytes (assuming 287) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:12369:23: note: in expansion of macro ‘PRINTF’
12369 | PRINTF
| ^~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15489:55: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
15489 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ^~
15490 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~
layer3/Executive.cpp:15489:26: note: ‘sprintf’ output between 32 and 1057 bytes into a destination of size 1024
15489 | sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15490 | order_input, (location == -2) ? "upper" : "current");
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:11893:70: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 217 [-Wformat-truncation=]
11893 | " Setting: %s set for %d atoms in object \"%s\".\n",
| ^~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 42 or more bytes (assuming 297) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11892:25: note: in expansion of macro ‘PRINTF’
11892 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11804:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11804 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~
11805 | name, value, nObj, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11804:21: note: directive argument in the range [1, 2147483647]
11804 | " Setting: %s set to %s in %d objects, state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:11804:21: note: directive argument in the range [1, 2147483647]
layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1084) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11803:19: note: in expansion of macro ‘PRINTF’
11803 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11801:42: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11801 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~ ~~~~~
layer3/Executive.cpp:11801:21: note: directive argument in the range [1, 2147483647]
11801 | " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1066) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11800:19: note: in expansion of macro ‘PRINTF’
11800 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11925:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11925 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~
11926 | name, value, rec->obj->Name, state + 1 ENDF(G);
| ~~~~~
layer3/Executive.cpp:11925:25: note: directive argument in the range [1, 2147483647]
11925 | " Setting: %s set to %s in object \"%s\", state %d.\n",
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 43 or more bytes (assuming 1330) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11924:23: note: in expansion of macro ‘PRINTF’
11924 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11918:46: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11918 | " Setting: %s set to %s in object \"%s\".\n",
| ^~
11919 | name, value, rec->obj->Name ENDF(G);
| ~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 34 or more bytes (assuming 1312) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11917:23: note: in expansion of macro ‘PRINTF’
11917 | PRINTF
| ^~~~~~
layer3/Executive.cpp:11760:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 237 [-Wformat-truncation=]
11760 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~ ~~~~~
layer0/Feedback.h:282:53: note: ‘snprintf’ output 21 or more bytes (assuming 1044) into a destination of size 255
282 | #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:11760:11: note: in expansion of macro ‘PRINTF’
11760 | PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
| ^~~~~~
layer3/Executive.cpp: In function ‘void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)’:
layer3/Executive.cpp:14465:37: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
14465 | " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 73 and 328 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14464:7: note: in expansion of macro ‘PRINTFB’
14464 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:14460:36: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
14460 | " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 61 and 316 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:14459:7: note: in expansion of macro ‘PRINTFB’
14459 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp:14491:11: warning: ‘char* strcpy(char*, const char*)’ writing between 1 and 256 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=]
14491 | strcpy(rec->name, obj->Name);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
cc1plus: note: destination object is likely at address zero
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)’:
layer3/Executive.cpp:9681:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
9681 | " Executive: object %s created.\n", oDst->Name ENDFB(G);
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:9680:3: note: in expansion of macro ‘PRINTFB’
9680 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)’:
layer3/Executive.cpp:2266:40: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
2266 | " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name
| ^~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 36 and 546 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:2265:17: note: in expansion of macro ‘PRINTFB’
2265 | PRINTFB(G, FB_Executive, FB_Actions)
| ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<std::vector<DiscardedRec> > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)’:
layer3/Executive.cpp:3523:41: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
3523 | " Warning: Invalid characters in '%s' have been replaced or stripped\n",
| ^~
3524 | name ENDFB(G);
| ~~~~
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 67 and 322 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:3522:5: note: in expansion of macro ‘PRINTFB’
3522 | PRINTFB(G, FB_Executive, FB_Warnings)
| ^~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’:
layer3/Executive.cpp:5076:57: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
5076 | " Executive: skipping unrecognized object \"%s\" of type %d.\n",
| ^~
In function ‘int ExecutiveSetNamedEntries(PyMOLGlobals*, PyObject*, int, int, int)’,
inlined from ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’ at layer3/Executive.cpp:5706:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 321 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5075:11: note: in expansion of macro ‘PRINTFB’
5075 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’:
layer3/Executive.cpp:5101:58: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
5101 | "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
| ^~
In function ‘int ExecutiveSetNamedEntries(PyMOLGlobals*, PyObject*, int, int, int)’,
inlined from ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’ at layer3/Executive.cpp:5706:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 304 bytes into a destination of size 255
274 | (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
| ^
layer3/Executive.cpp:5100:9: note: in expansion of macro ‘PRINTFB’
5100 | PRINTFB(G, FB_Executive, FB_Errors)
| ^~~~~~~
contrib/champ/os_memory.c: In function ‘OSMemoryZero’:
contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
55 | while(count&&(((int)p)&mask)) {
| ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’:
contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
137 | hash=(int)rec;
| ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’:
contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
150 | hash=(int)rec;
| ^
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
echo "FIXME: Test ends up with: AttributeError: module 'pymol' has no attribute 'start_pymol'"
FIXME: Test ends up with: AttributeError: module 'pymol' has no attribute 'start_pymol'
echo "Unfortunately upstream has removed the script that was used for testing from upstream source"
Unfortunately upstream has removed the script that was used for testing from upstream source
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pymol
/usr/lib/python3/dist-packages/setuptools/command/sdist.py:121: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`.
!!
********************************************************************************
Custom 'build_py' does not implement 'get_data_files_without_manifest'.
Please extend command classes from setuptools instead of distutils.
See https://peps.python.org/pep-0632/ for details.
********************************************************************************
!!
self._add_data_files(self._safe_data_files(build_py))
I: pybuild base:311: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-pymol
/usr/lib/python3/dist-packages/setuptools/command/sdist.py:121: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`.
!!
********************************************************************************
Custom 'build_py' does not implement 'get_data_files_without_manifest'.
Please extend command classes from setuptools instead of distutils.
See https://peps.python.org/pep-0632/ for details.
********************************************************************************
!!
self._add_data_files(self._safe_data_files(build_py))
debian/rules override_dh_install-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_numpy3
dh_install
rm -rf debian/python*pymol/usr/bin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installexamples -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_lintian -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress -Xpdb
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'python3-pymol' in '../python3-pymol_3.0.0+dfsg-1+bd1_arm64.deb'.
dpkg-deb: building package 'python3-pymol-dbgsym' in '../python3-pymol-dbgsym_3.0.0+dfsg-1+bd1_arm64.deb'.
dpkg-genbuildinfo --build=any -O../pymol_3.0.0+dfsg-1+bd1_arm64.buildinfo
dpkg-genchanges --build=any -mDebusine Rebuild <debusine@example.net> -O../pymol_3.0.0+dfsg-1+bd1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-10-24T20:18:29Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
pymol_3.0.0+dfsg-1+bd1_arm64.changes:
-------------------------------------
Format: 1.8
Date: Thu, 24 Oct 2024 20:15:07 +0000
Source: pymol (3.0.0+dfsg-1)
Binary: python3-pymol python3-pymol-dbgsym
Binary-Only: yes
Architecture: arm64
Version: 3.0.0+dfsg-1+bd1
Distribution: sid
Urgency: low
Maintainer: Debusine Rebuild <debusine@example.net>
Changed-By: Debusine Rebuild <debusine@example.net>
Description:
python3-pymol - Molecular Graphics System (Python 3 modules)
Changes:
pymol (3.0.0+dfsg-1+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
Checksums-Sha1:
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Checksums-Sha256:
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Files:
78ca6ad2923cb3383e9aa4b2dc5090e9 14059 science optional pymol_3.0.0+dfsg-1+bd1_arm64.buildinfo
3a467aa87d4e6d9d558cb669dbe057d7 43156384 debug optional python3-pymol-dbgsym_3.0.0+dfsg-1+bd1_arm64.deb
9191002dcf796a3f0d898d8ca08f55da 6514212 python optional python3-pymol_3.0.0+dfsg-1+bd1_arm64.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: pymol (3.0.0+dfsg-1)
Binary: python3-pymol python3-pymol-dbgsym
Architecture: arm64
Version: 3.0.0+dfsg-1+bd1
Binary-Only-Changes:
pymol (3.0.0+dfsg-1+bd1) sid; urgency=low, binary-only=yes
.
* Append +bd1 to version number; no source changes
* Binary-only non-maintainer upload for arm64; no source changes.
* Rebuild for python3.13
.
-- Debusine Rebuild <debusine@example.net> Thu, 24 Oct 2024 20:15:07 +0000
Checksums-Md5:
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Thu, 24 Oct 2024 20:18:28 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.5),
bash (= 5.2.32-1+b2),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-9),
bsdutils (= 1:2.40.2-9),
build-essential (= 12.12),
bzip2 (= 1.0.8-6),
coreutils (= 9.5-1),
cpp (= 4:14.2.0-1),
cpp-14 (= 14.2.0-7),
cpp-14-aarch64-linux-gnu (= 14.2.0-7),
cpp-aarch64-linux-gnu (= 4:14.2.0-1),
dash (= 0.5.12-9),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.20),
dh-autoreconf (= 20),
dh-python (= 6.20240824),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.11),
dpkg-dev (= 1.22.11),
dwz (= 0.15-1+b1),
file (= 1:5.45-3),
findutils (= 4.10.0-3),
fontconfig (= 2.15.0-1.1),
fontconfig-config (= 2.15.0-1.1),
fonts-dejavu-core (= 2.37-8),
fonts-dejavu-mono (= 2.37-8),
fonts-lmodern (= 2.005-1),
freeglut3-dev (= 3.4.0-1+b1),
g++ (= 4:14.2.0-1),
g++-14 (= 14.2.0-7),
g++-14-aarch64-linux-gnu (= 14.2.0-7),
g++-aarch64-linux-gnu (= 4:14.2.0-1),
gcc (= 4:14.2.0-1),
gcc-14 (= 14.2.0-7),
gcc-14-aarch64-linux-gnu (= 14.2.0-7),
gcc-14-base (= 14.2.0-7),
gcc-aarch64-linux-gnu (= 4:14.2.0-1),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1),
hdf5-helpers (= 1.10.10+repack-4),
hostname (= 3.25),
icu-devtools (= 72.1-5),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2),
libaec-dev (= 1.1.3-1),
libaec0 (= 1.1.3-1),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-7),
libatomic1 (= 14.2.0-7),
libattr1 (= 1:2.5.2-2),
libaudit-common (= 1:4.0.1-1),
libaudit1 (= 1:4.0.1-1),
libavahi-client3 (= 0.8-13+b2),
libavahi-common-data (= 0.8-13+b2),
libavahi-common3 (= 0.8-13+b2),
libbinutils (= 2.43.1-5),
libblas3 (= 3.12.0-3),
libblkid1 (= 2.40.2-9),
libbrotli-dev (= 1.1.0-2+b4),
libbrotli1 (= 1.1.0-2+b4),
libbsd0 (= 0.12.2-2),
libbz2-1.0 (= 1.0.8-6),
libbz2-dev (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcairo2 (= 1.18.2-2),
libcap-ng0 (= 0.8.5-3),
libcap2 (= 1:2.66-5),
libcc1-0 (= 14.2.0-7),
libcom-err2 (= 1.47.1-1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libcups2t64 (= 2.4.10-2),
libcurl3t64-gnutls (= 8.10.1-2),
libcurl4-gnutls-dev (= 8.10.1-2),
libcurl4t64 (= 8.10.1-2),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdbus-1-3 (= 1.14.10-4+b1),
libdebconfclient0 (= 0.272),
libdebhelper-perl (= 13.20),
libdouble-conversion3 (= 3.3.0-1+b1),
libdpkg-perl (= 1.22.11),
libdrm-amdgpu1 (= 2.4.123-1),
libdrm-common (= 2.4.123-1),
libdrm-radeon1 (= 2.4.123-1),
libdrm2 (= 2.4.123-1),
libedit2 (= 3.1-20240808-1),
libegl-dev (= 1.7.0-1+b1),
libegl-mesa0 (= 24.2.4-1),
libegl1 (= 1.7.0-1+b1),
libelf1t64 (= 0.192-4),
libevdev2 (= 1.13.3+dfsg-1),
libevent-2.1-7t64 (= 2.1.12-stable-10),
libexpat1 (= 2.6.3-1),
libexpat1-dev (= 2.6.3-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libfontconfig1 (= 2.15.0-1.1),
libfreetype-dev (= 2.13.3+dfsg-1),
libfreetype6 (= 2.13.3+dfsg-1),
libgbm1 (= 24.2.4-1),
libgcc-14-dev (= 14.2.0-7),
libgcc-s1 (= 14.2.0-7),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgfortran5 (= 14.2.0-7),
libgl-dev (= 1.7.0-1+b1),
libgl1 (= 1.7.0-1+b1),
libgl1-mesa-dev (= 24.2.4-1),
libgl1-mesa-dri (= 24.2.4-1),
libglapi-mesa (= 24.2.4-1),
libgles-dev (= 1.7.0-1+b1),
libgles1 (= 1.7.0-1+b1),
libgles2 (= 1.7.0-1+b1),
libglew-dev (= 2.2.0-4+b2),
libglew2.2 (= 2.2.0-4+b2),
libglib2.0-0t64 (= 2.82.2-1),
libglm-dev (= 0.9.9.8+ds-7),
libglu1-mesa (= 9.0.2-1.1+b1),
libglu1-mesa-dev (= 9.0.2-1.1+b1),
libglut-dev (= 3.4.0-1+b1),
libglut3.12 (= 3.4.0-1+b1),
libglvnd-core-dev (= 1.7.0-1+b1),
libglvnd-dev (= 1.7.0-1+b1),
libglvnd0 (= 1.7.0-1+b1),
libglx-dev (= 1.7.0-1+b1),
libglx-mesa0 (= 24.2.4-1),
libglx0 (= 1.7.0-1+b1),
libgmp-dev (= 2:6.3.0+dfsg-2+b1),
libgmp10 (= 2:6.3.0+dfsg-2+b1),
libgmpxx4ldbl (= 2:6.3.0+dfsg-2+b1),
libgnutls-dane0t64 (= 3.8.6-2),
libgnutls-openssl27t64 (= 3.8.6-2),
libgnutls28-dev (= 3.8.6-2),
libgnutls30t64 (= 3.8.6-2),
libgomp1 (= 14.2.0-7),
libgprofng0 (= 2.43.1-5),
libgraphite2-3 (= 1.3.14-2),
libgssapi-krb5-2 (= 1.21.3-3),
libgudev-1.0-0 (= 238-5),
libharfbuzz0b (= 10.0.1-1),
libhdf5-103-1t64 (= 1.10.10+repack-4),
libhdf5-cpp-103-1t64 (= 1.10.10+repack-4),
libhdf5-dev (= 1.10.10+repack-4),
libhdf5-fortran-102t64 (= 1.10.10+repack-4),
libhdf5-hl-100t64 (= 1.10.10+repack-4),
libhdf5-hl-cpp-100t64 (= 1.10.10+repack-4),
libhdf5-hl-fortran-100t64 (= 1.10.10+repack-4),
libhogweed6t64 (= 3.10-1),
libhwasan0 (= 14.2.0-7),
libice-dev (= 2:1.0.10-1+b1),
libice6 (= 2:1.0.10-1+b1),
libicu-dev (= 72.1-5),
libicu72 (= 72.1-5),
libidn2-0 (= 2.3.7-2),
libidn2-dev (= 2.3.7-2),
libinput-bin (= 1.26.2-1),
libinput10 (= 1.26.2-1),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-7),
libjansson4 (= 2.14-2+b2),
libjpeg-dev (= 1:2.1.5-3),
libjpeg62-turbo (= 1:2.1.5-3),
libjpeg62-turbo-dev (= 1:2.1.5-3),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-sphinxdoc (= 7.4.7-3),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
libk5crypto3 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-4),
libkpathsea6 (= 2024.20240313.70630+ds-4),
libkrb5-3 (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
liblapack3 (= 3.12.0-3),
libldap-2.5-0 (= 2.5.18+dfsg-3+b1),
libllvm19 (= 1:19.1.2-1),
liblsan0 (= 14.2.0-7),
liblzma-dev (= 5.6.2-2),
liblzma5 (= 5.6.2-2),
libmagic-mgc (= 1:5.45-3),
libmagic1t64 (= 1:5.45-3),
libmd0 (= 1.1.0-2),
libmd4c0 (= 0.5.2-2+b1),
libmount1 (= 2.40.2-9),
libmpc3 (= 1.3.1-1+b2),
libmpfi0 (= 1.5.4+ds-3),
libmpfr6 (= 4.2.1-1+b1),
libmtdev1t64 (= 1.1.6-1.2),
libncursesw6 (= 6.5-2),
libnetcdf-dev (= 1:4.9.2-7),
libnetcdf19t64 (= 1:4.9.2-7),
libnettle8t64 (= 3.10-1),
libnghttp2-14 (= 1.63.0-1),
libnghttp2-dev (= 1.63.0-1),
libnghttp3-9 (= 1.4.0-1),
libnghttp3-dev (= 1.4.0-1),
libngtcp2-16 (= 1.6.0-1),
libngtcp2-crypto-gnutls-dev (= 1.6.0-1),
libngtcp2-crypto-gnutls8 (= 1.6.0-1),
libngtcp2-dev (= 1.6.0-1),
libnsl2 (= 1.3.0-3+b2),
libopengl-dev (= 1.7.0-1+b1),
libopengl0 (= 1.7.0-1+b1),
libp11-kit-dev (= 0.25.5-2),
libp11-kit0 (= 0.25.5-2),
libpam-modules (= 1.5.3-7),
libpam-modules-bin (= 1.5.3-7),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7),
libpaper-utils (= 1.1.29+b1),
libpaper1 (= 1.1.29+b1),
libpcre2-16-0 (= 10.42-4+b1),
libpcre2-8-0 (= 10.42-4+b1),
libperl5.40 (= 5.40.0-6),
libpipeline1 (= 1.5.8-1),
libpixman-1-0 (= 0.42.2-1+b1),
libpkgconf3 (= 1.8.1-4),
libpng-dev (= 1.6.44-2),
libpng16-16t64 (= 1.6.44-2),
libpotrace0 (= 1.16-2+b1),
libpsl-dev (= 0.21.2-1.1),
libpsl5t64 (= 0.21.2-1.1),
libptexenc1 (= 2024.20240313.70630+ds-4),
libpython3-all-dev (= 3.12.6-1+debusine1),
libpython3-dev (= 3.12.6-1+debusine1),
libpython3-stdlib (= 3.12.6-1+debusine1),
libpython3.12-dev (= 3.12.7-1),
libpython3.12-minimal (= 3.12.7-1),
libpython3.12-stdlib (= 3.12.7-1),
libpython3.12t64 (= 3.12.7-1),
libpython3.13 (= 3.13.0-1),
libpython3.13-dev (= 3.13.0-1),
libpython3.13-minimal (= 3.13.0-1),
libpython3.13-stdlib (= 3.13.0-1),
libqt5core5t64 (= 5.15.13+dfsg-4),
libqt5dbus5t64 (= 5.15.13+dfsg-4),
libqt5designer5 (= 5.15.13-4+b1),
libqt5gui5t64 (= 5.15.13+dfsg-4),
libqt5help5 (= 5.15.13-4+b1),
libqt5network5t64 (= 5.15.13+dfsg-4),
libqt5opengl5t64 (= 5.15.13+dfsg-4),
libqt5printsupport5t64 (= 5.15.13+dfsg-4),
libqt5sql5t64 (= 5.15.13+dfsg-4),
libqt5test5t64 (= 5.15.13+dfsg-4),
libqt5widgets5t64 (= 5.15.13+dfsg-4),
libqt5xml5t64 (= 5.15.13+dfsg-4),
libreadline8t64 (= 8.2-5),
librtmp-dev (= 2.4+20151223.gitfa8646d.1-2+b4),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b4),
libsasl2-2 (= 2.1.28+dfsg1-8),
libsasl2-modules-db (= 2.1.28+dfsg1-8),
libseccomp2 (= 2.5.5-1+b1),
libselinux1 (= 3.7-3),
libsensors-config (= 1:3.6.0-10),
libsensors5 (= 1:3.6.0-10),
libsframe1 (= 2.43.1-5),
libsm-dev (= 2:1.2.3-1+b1),
libsm6 (= 2:1.2.3-1+b1),
libsmartcols1 (= 2.40.2-9),
libsqlite3-0 (= 3.46.1-1),
libssh2-1-dev (= 1.11.1-1),
libssh2-1t64 (= 1.11.1-1),
libssl-dev (= 3.3.2-1),
libssl3t64 (= 3.3.2-1),
libstdc++-14-dev (= 14.2.0-7),
libstdc++6 (= 14.2.0-7),
libsynctex2 (= 2024.20240313.70630+ds-4),
libsystemd0 (= 256.7-2),
libsz2 (= 1.1.3-1),
libtasn1-6 (= 4.19.0-3+b2),
libtasn1-6-dev (= 4.19.0-3+b2),
libteckit0 (= 2.5.12+ds1-1),
libtexlua53-5 (= 2024.20240313.70630+ds-4),
libtinfo6 (= 6.5-2),
libtirpc-common (= 1.3.4+ds-1.3),
libtirpc3t64 (= 1.3.4+ds-1.3),
libtool (= 2.4.7-7),
libtsan2 (= 14.2.0-7),
libubsan1 (= 14.2.0-7),
libuchardet0 (= 0.0.8-1+b1),
libudev1 (= 256.7-2),
libunbound8 (= 1.22.0-1),
libunistring5 (= 1.2-1),
libuuid1 (= 2.40.2-9),
libvulkan1 (= 1.3.296.0-1),
libwacom-common (= 2.13.0-1),
libwacom9 (= 2.13.0-1),
libwayland-client0 (= 1.23.0-1),
libwayland-server0 (= 1.23.0-1),
libx11-6 (= 2:1.8.7-1+b1),
libx11-data (= 2:1.8.7-1),
libx11-dev (= 2:1.8.7-1+b1),
libx11-xcb1 (= 2:1.8.7-1+b1),
libxau-dev (= 1:1.0.9-1+b1),
libxau6 (= 1:1.0.9-1+b1),
libxaw7 (= 2:1.0.14-1+b2),
libxcb-dri2-0 (= 1.17.0-2),
libxcb-dri3-0 (= 1.17.0-2),
libxcb-glx0 (= 1.17.0-2),
libxcb-icccm4 (= 0.4.2-1),
libxcb-image0 (= 0.4.0-2+b1),
libxcb-keysyms1 (= 0.4.0-1+b3),
libxcb-present0 (= 1.17.0-2),
libxcb-randr0 (= 1.17.0-2),
libxcb-render-util0 (= 0.3.9-1+b2),
libxcb-render0 (= 1.17.0-2),
libxcb-shape0 (= 1.17.0-2),
libxcb-shm0 (= 1.17.0-2),
libxcb-sync1 (= 1.17.0-2),
libxcb-util1 (= 0.4.0-1+b2),
libxcb-xfixes0 (= 1.17.0-2),
libxcb-xinerama0 (= 1.17.0-2),
libxcb-xinput0 (= 1.17.0-2),
libxcb-xkb1 (= 1.17.0-2),
libxcb1 (= 1.17.0-2),
libxcb1-dev (= 1.17.0-2),
libxdmcp-dev (= 1:1.1.2-3+b1),
libxdmcp6 (= 1:1.1.2-3+b1),
libxext-dev (= 2:1.3.4-1+b2),
libxext6 (= 2:1.3.4-1+b2),
libxfixes3 (= 1:6.0.0-2+b1),
libxi6 (= 2:1.8.2-1),
libxkbcommon-x11-0 (= 1.6.0-1+b1),
libxkbcommon0 (= 1.6.0-1+b1),
libxml2-dev (= 2.13.3+dfsg-0exp2+bd1),
libxml2n (= 2.13.3+dfsg-0exp2+bd1),
libxmu6 (= 2:1.1.3-3+b2),
libxpm4 (= 1:3.5.17-1+b1),
libxrender1 (= 1:0.9.10-1.1+b1),
libxshmfence1 (= 1.3-1+b1),
libxt-dev (= 1:1.2.1-1.2),
libxt6t64 (= 1:1.2.1-1.2),
libxxf86vm1 (= 1:1.1.4-1+b3),
libz3-4 (= 4.8.12-3.1+b2),
libzstd-dev (= 1.5.6+dfsg-1),
libzstd1 (= 1.5.6+dfsg-1),
libzzip-0-13t64 (= 0.13.72+dfsg.1-1.3),
linux-libc-dev (= 6.11.4-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
media-types (= 10.1.0),
mesa-libgallium (= 24.2.4-1),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2),
netbase (= 6.4),
nettle-dev (= 3.10-1),
openssl-provider-legacy (= 3.3.2-1),
patch (= 2.7.6-7),
perl (= 5.40.0-6),
perl-base (= 5.40.0-6),
perl-modules-5.40 (= 5.40.0-6),
pkgconf (= 1.8.1-4),
pkgconf-bin (= 1.8.1-4),
po-debconf (= 1.0.21+nmu1),
python3 (= 3.12.6-1+debusine1),
python3-all (= 3.12.6-1+debusine1),
python3-all-dev (= 3.12.6-1+debusine1),
python3-autocommand (= 2.2.2-3),
python3-dev (= 3.12.6-1+debusine1),
python3-inflect (= 7.3.1-2),
python3-jaraco.context (= 6.0.0-1),
python3-jaraco.functools (= 4.1.0-1),
python3-jaraco.text (= 4.0.0-1),
python3-minimal (= 3.12.6-1+debusine1),
python3-more-itertools (= 10.5.0-1),
python3-numpy (= 1:1.26.4+ds-11+bootstrap1),
python3-opengl (= 3.1.7+dfsg-1),
python3-pkg-resources (= 75.2.0-1),
python3-pyqt5 (= 5.15.11+dfsg-1+debusine1),
python3-pyqt5.qtopengl (= 5.15.11+dfsg-1+debusine1),
python3-pyqt5.sip (= 12.15.0-1+debusine1),
python3-setuptools (= 75.2.0-1),
python3-typeguard (= 4.3.0-1),
python3-typing-extensions (= 4.12.2-2),
python3-zipp (= 3.20.2-1),
python3.12 (= 3.12.7-1),
python3.12-dev (= 3.12.7-1),
python3.12-minimal (= 3.12.7-1),
python3.13 (= 3.13.0-1),
python3.13-dev (= 3.13.0-1),
python3.13-minimal (= 3.13.0-1),
readline-common (= 8.2-5),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-2),
sensible-utils (= 0.0.24),
shared-mime-info (= 2.4-5+b1),
sysvinit-utils (= 3.11-1),
t1utils (= 1.41-4),
tar (= 1.35+dfsg-3),
tex-common (= 6.18),
texlive-base (= 2024.20240829-2),
texlive-binaries (= 2024.20240313.70630+ds-4),
texlive-latex-base (= 2024.20240829-2),
tzdata (= 2024b-3),
ucf (= 3.0043+nmu1),
util-linux (= 2.40.2-9),
x11-common (= 1:7.7+23.1),
x11proto-dev (= 2024.1-1),
xdg-utils (= 1.1.3-4.1),
xkb-data (= 2.42-1),
xorg-sgml-doctools (= 1:1.11-1.1),
xtrans-dev (= 1.4.0-1),
xz-utils (= 5.6.2-2),
zlib1g (= 1:1.3.dfsg+really1.3.1-1),
zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1)
Environment:
DEB_BUILD_OPTIONS="parallel=8"
LANG="C.UTF-8"
LC_COLLATE="C.UTF-8"
LC_CTYPE="C.UTF-8"
SOURCE_DATE_EPOCH="1729800907"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
python3-pymol-dbgsym_3.0.0+dfsg-1+bd1_arm64.deb
-----------------------------------------------
new Debian package, version 2.0.
size 43156384 bytes: control archive=768 bytes.
526 bytes, 12 lines control
515 bytes, 5 lines md5sums
Package: python3-pymol-dbgsym
Source: pymol (3.0.0+dfsg-1)
Version: 3.0.0+dfsg-1+bd1
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 43208
Depends: python3-pymol (= 3.0.0+dfsg-1+bd1)
Section: debug
Priority: optional
Description: debug symbols for python3-pymol
Build-Ids: 431d4c64ecfbfe9b4ce5b90b478b7dabbf5b0645 899b482df90d61755e61df5f59d44cba4ac90370 97511dd47cdba9a11e5b8e897eecce1c4387ce81 b5c901f297d1160576805f631a33c59dedaa8ccb
drwxr-xr-x root/root 0 2024-10-24 20:15 ./
drwxr-xr-x root/root 0 2024-10-24 20:15 ./usr/
drwxr-xr-x root/root 0 2024-10-24 20:15 ./usr/lib/
drwxr-xr-x root/root 0 2024-10-24 20:15 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-10-24 20:15 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-10-24 20:15 ./usr/lib/debug/.build-id/43/
-rw-r--r-- root/root 19368816 2024-10-24 20:15 ./usr/lib/debug/.build-id/43/1d4c64ecfbfe9b4ce5b90b478b7dabbf5b0645.debug
drwxr-xr-x root/root 0 2024-10-24 20:15 ./usr/lib/debug/.build-id/89/
-rw-r--r-- root/root 104736 2024-10-24 20:15 ./usr/lib/debug/.build-id/89/9b482df90d61755e61df5f59d44cba4ac90370.debug
drwxr-xr-x root/root 0 2024-10-24 20:15 ./usr/lib/debug/.build-id/97/
-rw-r--r-- root/root 19365272 2024-10-24 20:15 ./usr/lib/debug/.build-id/97/511dd47cdba9a11e5b8e897eecce1c4387ce81.debug
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python3-pymol_3.0.0+dfsg-1+bd1_arm64.deb
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Package: python3-pymol
Source: pymol (3.0.0+dfsg-1)
Version: 3.0.0+dfsg-1+bd1
Architecture: arm64
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 22336
Depends: python3-numpy (>= 1:1.25.0), python3-opengl, python3-pyqt5, python3-pyqt5.qtopengl, python3-numpy-abi9, python3 (<< 3.14), python3 (>= 3.12~), python3:any, libc6 (>= 2.38), libfreetype6 (>= 2.2.1), libgcc-s1 (>= 3.0), libgl1, libglew2.2 (>= 2.2.0-4+b2), libgomp1 (>= 4.9), libnetcdf19t64 (>= 3.6.1), libpng16-16t64 (>= 1.6.2), libstdc++6 (>= 13.1), libxml2n (>= 2.7.4), pymol-data (= 3.0.0+dfsg-1)
Section: python
Priority: optional
Homepage: https://www.pymol.org
Description: Molecular Graphics System (Python 3 modules)
PyMOL is a molecular graphics system targeted at medium to large
biomolecules like proteins. It can generate high-quality publication-ready
molecular graphics images and animations.
.
Features include:
* Visualization of molecules, molecular trajectories and surfaces
of crystallography data or orbitals
* Molecular builder and sculptor
* Internal raytracer and movie generator
* Fully extensible and scriptable via a Python interface
.
File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw,
CCP4 maps, XPLOR maps and Gaussian cube maps.
.
This package contains the Python 3 modules.
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lintian
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| Summary |
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Build Architecture: arm64
Build Type: any
Build-Space: 814600
Build-Time: 201
Distribution: sid
Host Architecture: arm64
Install-Time: 110
Job: /tmp/debusine-fetch-exec-upload-5__yt4dk/pymol_3.0.0+dfsg-1.dsc
Lintian: pass
Machine Architecture: arm64
Package: pymol
Package-Time: 377
Source-Version: 3.0.0+dfsg-1
Space: 814600
Status: successful
Version: 3.0.0+dfsg-1+bd1
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Finished at 2024-10-24T20:18:29Z
Build needed 00:06:17, 814600k disk space