deb_control_files:
- control
- md5sums
deb_fields:
Architecture: arm64
Depends: libc6 (>= 2.34), perl:any
Description: |-
clustering and assembling short reads for bioinformatics
Efficient tool for clustering and assembling short reads,
especially for RAD.
.
Rainbow is developed to provide an ultra-fast and memory-efficient
solution to clustering and assembling short reads produced by RAD-seq.
First, Rainbow clusters reads using a spaced seed method. Then, Rainbow
implements a heterozygote calling like strategy to divide potential
groups into haplotypes in a top-down manner. long a guided tree, it
iteratively merges sibling leaves in a bottom-up manner if they are
similar enough. Here, the similarity is defined by comparing the 2nd
reads of a RAD segment. This approach tries to collapse heterozygote
while discriminate repetitive sequences. At last, Rainbow uses a greedy
algorithm to locally assemble merged reads into contigs. Rainbow not
only outputs the optimal but also suboptimal assembly results. Based on
simulation and a real guppy RAD-seq data, it is shown that Rainbow is
more competent than the other tools in dealing with RAD-seq data.
Homepage: http://sourceforge.net/projects/bio-rainbow/
Installed-Size: '307'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: bio-rainbow
Priority: optional
Section: science
Source: bio-rainbow (2.0.4+dfsg-2)
Version: 2.0.4+dfsg-2+b1
srcpkg_name: bio-rainbow
srcpkg_version: 2.0.4+dfsg-2