deb_control_files:
- control
- md5sums
deb_fields:
Architecture: arm64
Conflicts: r-other-hms-dbmi-spp
Depends: r-api-4.0, r-cran-rcpp, r-bioc-rsamtools, r-cran-catools, r-cran-bh (>=
1.66), libbz2-1.0, libc6 (>= 2.38), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1),
zlib1g (>= 1:1.1.4)
Description: |-
GNU R ChIP-seq processing pipeline
R package for anlaysis of ChIP-seq and other functional sequencing data
* Assess overall DNA-binding signals in the data and select appropriate
quality of tag alignment.
* Discard or restrict positions with abnormally high number of tags.
* Calculate genome-wide profiles of smoothed tag density and save them
in WIG files for viewing in other browsers.
* Calculate genome-wide profiles providing conservative statistical
estimates of fold enrichment ratios along the genome. These can be
exported for browser viewing, or thresholded to determine regions of
significant enrichment/depletion.
* Determine statistically significant point binding positions
* Assess whether the set of point binding positions detected at a
current sequencing depth meets saturation criteria, and if does not,
estimate what sequencing depth would be required to do so.
Homepage: https://cran.r-project.org/package=spp
Installed-Size: '436'
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Package: r-cran-spp
Priority: optional
Provides: r-other-hms-dbmi-spp
Replaces: r-other-hms-dbmi-spp
Section: gnu-r
Source: r-cran-spp (1.16.0-2)
Version: 1.16.0-2+b1
srcpkg_name: r-cran-spp
srcpkg_version: 1.16.0-2