deb_control_files:
- control
- md5sums
deb_fields:
Architecture: amd64
Breaks: libfastahack0 (<< 1.0.0+dfsg-4)
Depends: libc6 (>= 2.38), libdisorder0 (>= 0.0.2), libfastahack0 (>= 0.0+git20160702.bbc645f),
libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1)
Description: |-
utility for indexing and sequence extraction from FASTA files
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
Homepage: https://github.com/ekg/fastahack
Installed-Size: '45'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: fastahack
Priority: optional
Replaces: libfastahack0 (<< 1.0.0+dfsg-4)
Section: science
Source: libfastahack (1.0.0+dfsg-11)
Version: 1.0.0+dfsg-11+b2
srcpkg_name: libfastahack
srcpkg_version: 1.0.0+dfsg-11