Uses of Class
org.forester.io.parsers.nhx.NHXFormatException
Packages that use NHXFormatException
Package
Description
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Uses of NHXFormatException in org.forester.io.parsers.nexus
Methods in org.forester.io.parsers.nexus that throw NHXFormatException -
Uses of NHXFormatException in org.forester.io.parsers.nhx
Methods in org.forester.io.parsers.nhx that throw NHXFormatExceptionModifier and TypeMethodDescriptionfinal Phylogeny
NHXParser.next()
static final Phylogeny[]
static final void
NHXParser.parseNHX
(String s, PhylogenyNode node_to_annotate, NHXParser.TAXONOMY_EXTRACTION taxonomy_extraction, boolean replace_underscores, boolean allow_errors_in_distance_to_parent, boolean replace_bell) final void
NHXParser.reset()
final void
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Uses of NHXFormatException in org.forester.phylogeny
Methods in org.forester.phylogeny that throw NHXFormatExceptionModifier and TypeMethodDescriptionstatic PhylogenyNode
PhylogenyNode.createInstanceFromNhxString
(String nhx) static PhylogenyNode
PhylogenyNode.createInstanceFromNhxString
(String nhx, NHXParser.TAXONOMY_EXTRACTION taxonomy_extraction) static PhylogenyNode
PhylogenyNode.createInstanceFromNhxString
(String nhx, NHXParser.TAXONOMY_EXTRACTION taxonomy_extraction, boolean replace_underscores) -
Uses of NHXFormatException in org.forester.phylogeny.data
Constructors in org.forester.phylogeny.data that throw NHXFormatException -
Uses of NHXFormatException in org.forester.tools
Methods in org.forester.tools that throw NHXFormatExceptionModifier and TypeMethodDescriptionstatic String
PhylogenyDecorator.decorate
(Phylogeny phylogeny, Map<String, String> map, PhylogenyDecorator.FIELD field, boolean extract_bracketed_scientific_name, boolean extract_bracketed_tax_code, boolean picky, boolean cut_name_after_space, boolean trim_after_tilde, boolean verbose)