Uses of Interface
org.forester.go.GoTerm
Packages that use GoTerm
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Uses of GoTerm in org.forester.go
Classes in org.forester.go that implement GoTermMethods in org.forester.go that return GoTermModifier and TypeMethodDescriptionstatic GoTerm
GoUtils.getPenultimateGoTerm
(GoTerm go_term, Map<GoId, GoTerm> map) static GoTerm
GoUtils.getUltimateGoTerm
(GoTerm go_term, Map<GoId, GoTerm> map) Methods in org.forester.go that return types with arguments of type GoTermModifier and TypeMethodDescriptionGoUtils.createGoIdToGoTermMap
(List<GoTerm> go_terms) GoUtils.getAllSuperGoTerms
(GoId go_id, List<GoTerm> go_terms) GoUtils.getAllSuperGoTerms
(GoId go_id, Map<GoId, GoTerm> goid_to_term_map) GoUtils.getAllSuperGoTerms
(GoTerm go_term, Map<GoId, GoTerm> goid_to_term_map) OBOparser.parse()
Methods in org.forester.go with parameters of type GoTermModifier and TypeMethodDescriptionint
Compares based on GO id.GoUtils.getAllSuperGoTerms
(GoTerm go_term, Map<GoId, GoTerm> goid_to_term_map) static GoTerm
GoUtils.getPenultimateGoTerm
(GoTerm go_term, Map<GoId, GoTerm> map) static GoTerm
GoUtils.getUltimateGoTerm
(GoTerm go_term, Map<GoId, GoTerm> map) Method parameters in org.forester.go with type arguments of type GoTermModifier and TypeMethodDescriptionstatic LinkedHashMap
<GoId, Integer> GoUtils.countCategories
(List<GoTerm> categories, List<GoTerm> experiment_set, Map<GoId, GoTerm> all_go_terms) This is for counting the how many times each GO term in 'categories' is a (direct or indirect) super term of the GO terms in 'experiment_set'.static LinkedHashMap
<GoId, Integer> GoUtils.countCategories
(List<GoTerm> categories, List<GoTerm> experiment_set, Map<GoId, GoTerm> all_go_terms) This is for counting the how many times each GO term in 'categories' is a (direct or indirect) super term of the GO terms in 'experiment_set'.static LinkedHashMap
<GoId, Integer> GoUtils.countCategoriesId
(List<GoId> categories, List<GoId> experiment_set, Map<GoId, GoTerm> all_go_terms) GoUtils.createGoIdToGoTermMap
(List<GoTerm> go_terms) GoUtils.getAllSuperGoIds
(GoId go_id, Map<GoId, GoTerm> goid_to_term_map) GoUtils.getAllSuperGoTerms
(GoId go_id, List<GoTerm> go_terms) GoUtils.getAllSuperGoTerms
(GoId go_id, Map<GoId, GoTerm> goid_to_term_map) GoUtils.getAllSuperGoTerms
(GoTerm go_term, Map<GoId, GoTerm> goid_to_term_map) static GoTerm
GoUtils.getPenultimateGoTerm
(GoTerm go_term, Map<GoId, GoTerm> map) static GoTerm
GoUtils.getUltimateGoTerm
(GoTerm go_term, Map<GoId, GoTerm> map) -
Uses of GoTerm in org.forester.ws.seqdb
Methods in org.forester.ws.seqdb that return types with arguments of type GoTermModifier and TypeMethodDescriptionEbiDbEntry.getGoTerms()
SequenceDatabaseEntry.getGoTerms()
UniProtEntry.getGoTerms()