Uses of Interface
org.forester.util.DescriptiveStatistics
Packages that use DescriptiveStatistics
Package
Description
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Uses of DescriptiveStatistics in org.forester.archaeopteryx.phylogeny.data
Methods in org.forester.archaeopteryx.phylogeny.data with parameters of type DescriptiveStatisticsModifier and TypeMethodDescriptionstatic RenderableVector
RenderableVector.createInstance
(List<Double> values, DescriptiveStatistics stats, Configuration configuration) -
Uses of DescriptiveStatistics in org.forester.msa
Methods in org.forester.msa that return DescriptiveStatisticsModifier and TypeMethodDescriptionstatic DescriptiveStatistics
MsaMethods.calcBasicGapinessStatistics
(Msa msa) static final DescriptiveStatistics
MsaMethods.calcNumberOfGapsStats
(Msa msa) static final DescriptiveStatistics
MsaMethods.calculateEffectiveLengthStatistics
(Msa msa) static final DescriptiveStatistics
MsaMethods.calculateIdentityRatio
(int from, int to, Msa msa) -
Uses of DescriptiveStatistics in org.forester.pccx
Constructors in org.forester.pccx with parameters of type DescriptiveStatisticsModifierConstructorDescriptionExternalNodeBasedCoverage
(DescriptiveStatistics stats, double average_raw_score, CoverageCalculationOptions options) -
Uses of DescriptiveStatistics in org.forester.phylogeny
Methods in org.forester.phylogeny that return DescriptiveStatisticsModifier and TypeMethodDescriptionstatic DescriptiveStatistics
PhylogenyMethods.calculateBranchLengthStatistics
(Phylogeny phy) static DescriptiveStatistics
PhylogenyMethods.calculateNumberOfDescendantsPerNodeStatistics
(Phylogeny phy) Methods in org.forester.phylogeny that return types with arguments of type DescriptiveStatisticsModifier and TypeMethodDescriptionstatic List
<DescriptiveStatistics> PhylogenyMethods.calculateConfidenceStatistics
(Phylogeny phy) -
Uses of DescriptiveStatistics in org.forester.surfacing
Methods in org.forester.surfacing that return DescriptiveStatisticsModifier and TypeMethodDescriptionstatic DescriptiveStatistics
SurfacingUtil.calculateDescriptiveStatisticsForMeanValues
(Set<DomainSimilarity> similarities) DomainLengths.calculateMeanBasedStatistics()
Returns descriptive statistics based on the arithmetic means for each species.DomainLengthsTable.calculateMeanBasedStatisticsForAllSpecies()
DomainLengthsTable.calculateMeanBasedStatisticsForDomain
(String domain_id) DomainLengthsTable.calculateMeanBasedStatisticsForSpecies
(Species species) DomainLengths.getLengthStatistic
(Species species) DomainLengthsTable.getLengthStatistic
(String domain_id, Species species) BasicGenomeWideCombinableDomains.getPerGenomeDomainPromiscuityStatistics()
GenomeWideCombinableDomains.getPerGenomeDomainPromiscuityStatistics()
This should return a statistic for per domain promiscuity in a genome.Methods in org.forester.surfacing that return types with arguments of type DescriptiveStatisticsMethods in org.forester.surfacing with parameters of type DescriptiveStatisticsModifier and TypeMethodDescriptionstatic void
SurfacingUtil.domainsPerProteinsStatistics
(String genome, List<Protein> protein_list, DescriptiveStatistics all_genomes_domains_per_potein_stats, SortedMap<Integer, Integer> all_genomes_domains_per_potein_histo, SortedSet<String> domains_which_are_always_single, SortedSet<String> domains_which_are_sometimes_single_sometimes_not, SortedSet<String> domains_which_never_single, Writer writer) -
Uses of DescriptiveStatistics in org.forester.util
Classes in org.forester.util that implement DescriptiveStatisticsConstructors in org.forester.util with parameters of type DescriptiveStatistics