sbuild (Debian sbuild) 0.85.11~bpo12+1 (31 August 2024) on debusine-worker-arm64-demeter-09.freexian.com
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| pairtools 1.0.3-1+bd1 (arm64) Fri, 01 Nov 2024 04:41:08 +0000 |
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Package: pairtools
Version: 1.0.3-1+bd1
Source Version: 1.0.3-1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
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I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
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| Chroot Setup Commands |
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rm -f /etc/resolv.conf
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Get:1 file:/build/pairtools-FPzgWM/resolver-ViGnin/apt_archive ./ InRelease
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Get:3 http://deb.debian.org/debian sid InRelease [202 kB]
Get:2 file:/build/pairtools-FPzgWM/resolver-ViGnin/apt_archive ./ Release [609 B]
Get:4 file:/build/pairtools-FPzgWM/resolver-ViGnin/apt_archive ./ Release.gpg
Ign:4 file:/build/pairtools-FPzgWM/resolver-ViGnin/apt_archive ./ Release.gpg
Get:5 file:/build/pairtools-FPzgWM/resolver-ViGnin/apt_archive ./ Packages [49.5 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9934 kB]
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The following packages will be upgraded:
coreutils dash debianutils diffutils e2fsprogs grep gzip libacl1
libaudit-common libaudit1 libcap2 libcom-err2 libdebconfclient0
libext2fs2t64 libgmp10 libgnutls30t64 liblz4-1 libss2 logsave
19 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Get:3 http://deb.debian.org/debian sid/main arm64 dash arm64 0.5.12-9+b1 [91.4 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 diffutils arm64 1:3.10-1+b1 [373 kB]
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Get:6 http://deb.debian.org/debian sid/main arm64 gzip arm64 1.12-1.1+b1 [131 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 logsave arm64 1.47.1-1+b1 [22.9 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 libext2fs2t64 arm64 1.47.1-1+b1 [203 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 e2fsprogs arm64 1.47.1-1+b1 [560 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 libacl1 arm64 2.3.2-2+b1 [32.2 kB]
Get:11 http://deb.debian.org/debian sid/main arm64 libaudit-common all 1:4.0.1-2 [12.3 kB]
Get:12 http://deb.debian.org/debian sid/main arm64 libaudit1 arm64 1:4.0.1-2 [53.8 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 libcap2 arm64 1:2.66-5+b1 [27.2 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libdebconfclient0 arm64 0.272+b1 [10.5 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 libgmp10 arm64 2:6.3.0+dfsg-2+b2 [535 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libgnutls30t64 arm64 3.8.6-2+b1 [1355 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 liblz4-1 arm64 1.9.4-3+b1 [55.8 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libss2 arm64 1.47.1-1+b1 [27.5 kB]
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Processing triggers for libc-bin (2.40-3) ...
Processing triggers for debianutils (5.20+b1) ...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Local sources
-------------
/tmp/debusine-fetch-exec-upload-wjlnjb5x/pairtools_1.0.3-1.dsc exists in /tmp/debusine-fetch-exec-upload-wjlnjb5x; copying to chroot
I: NOTICE: Log filtering will replace 'build/pairtools-FPzgWM/pairtools-1.0.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/pairtools-FPzgWM' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, cython3, python3-setuptools, python3-bioframe, python3-click, python3-exceptiongroup, python3-numpy, python3-pandas, python3-pysam (>= 0.20.0+ds-3~), python3-pytest, python3-scipy, libhts-dev, python3-yaml, build-essential, fakeroot, dumb-init
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, cython3, python3-setuptools, python3-bioframe, python3-click, python3-exceptiongroup, python3-numpy, python3-pandas, python3-pysam (>= 0.20.0+ds-3~), python3-pytest, python3-scipy, libhts-dev, python3-yaml, build-essential, fakeroot, dumb-init
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Ign:3 file:/<<BUILDDIR>>/resolver-ViGnin/apt_archive ./ Release.gpg
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev binutils
binutils-aarch64-linux-gnu binutils-common blt bsdextrautils build-essential
bzip2 ca-certificates cpp cpp-14 cpp-14-aarch64-linux-gnu
cpp-aarch64-linux-gnu cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism dpkg-dev dumb-init dwz fakeroot file
fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-14
g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libasan8 libatomic1
libbinutils libblas3 libbrotli-dev libbrotli1 libbz2-dev libc-dev-bin
libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0
libdpkg-perl libelf1t64 libevent-2.1-7t64 libexpat1 libexpat1-dev
libfakeroot libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libfribidi0 libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5
libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64
libgnutls-openssl27t64 libgnutls28-dev libgomp1 libgprofng0 libgraphite2-3
libgssapi-krb5-2 libharfbuzz0b libhts-dev libhts3t64 libhtscodecs2
libhwasan0 libicu72 libidn2-dev libimagequant0 libisl23 libitm1 libjansson4
libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 liblzma-dev
libmagic-mgc libmagic1t64 libmpc3 libmpfr6 libncursesw6 libnghttp2-14
libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16
libngtcp2-crypto-gnutls-dev libngtcp2-crypto-gnutls8 libngtcp2-dev libnsl2
libopenjp2-7 libp11-kit-dev libperl5.40 libpipeline1 libpkgconf3
libpng16-16t64 libpsl-dev libpsl5t64 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0
libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db
libsframe1 libsharpyuv0 libsqlite3-0 libssh2-1-dev libssh2-1t64 libssl-dev
libstdc++-14-dev libtasn1-6-dev libtcl8.6 libtiff6 libtirpc-common
libtirpc3t64 libtk8.6 libtool libtsan2 libubsan1 libuchardet0 libunbound8
libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1
libyaml-0-2 libzstd-dev linux-libc-dev m4 make man-db media-types netbase
nettle-dev openssl patch perl perl-modules-5.40 pkgconf pkgconf-bin
po-debconf python-matplotlib-data python3 python3-all python3-all-dev
python3-appdirs python3-attr python3-autocommand python3-bioframe
python3-brotli python3-certifi python3-chardet python3-charset-normalizer
python3-click python3-colorama python3-contourpy python3-cycler
python3-dateutil python3-decorator python3-dev python3-exceptiongroup
python3-fonttools python3-fs python3-idna python3-inflect python3-iniconfig
python3-jaraco.context python3-jaraco.functools python3-jaraco.text
python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
python3-minimal python3-more-itertools python3-mpmath python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-pil
python3-pil.imagetk python3-pkg-resources python3-pluggy python3-pyparsing
python3-pysam python3-pytest python3-requests python3-scipy
python3-setuptools python3-six python3-sympy python3-tk python3-typeguard
python3-typing-extensions python3-tz python3-ufolib2 python3-urllib3
python3-yaml python3-zipp python3.12 python3.12-dev python3.12-minimal
python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk
readline-common rpcsvc-proto sensible-utils tk8.6-blt2.5 unicode-data
x11-common xz-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc binutils-doc gprofng-gui
blt-demo bzip2-doc cpp-doc gcc-14-locales cpp-14-doc cython-doc dh-make flit
python3-build python3-installer python3-wheel debian-keyring gcc-14-doc
gcc-multilib manpages-dev flex bison gdb gcc-doc gdb-aarch64-linux-gnu
gettext-doc libasprintf-dev libgettextpo-dev groff libc-devtools glibc-doc
libcurl4-doc libidn-dev libkrb5-dev libldap2-dev gnupg | sq | sqop
| pgpainless-cli | sequoia-chameleon-gnupg git bzr gdbm-l10n
low-memory-monitor gmp-doc libgmp10-doc libmpfr-dev dns-root-data gnutls-bin
gnutls-doc krb5-doc krb5-user libjs-jquery-ui-docs liblcms2-utils
liblzma-doc libnghttp2-doc p11-kit-doc libssl-doc libstdc++-14-doc tcl8.6
tk8.6 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc make-doc
apparmor less www-browser ed diffutils-doc perl-doc
libterm-readline-gnu-perl | libterm-readline-perl-perl
libtap-harness-archive-perl libmail-box-perl python3-doc python3-venv
python-attr-doc python-charset-normalizer-doc python-cycler-doc
python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript
gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc
python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5
python3-sip python3-tornado texlive-extra-utils texlive-latex-extra
python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python-pandas-doc
python3-statsmodels python-pil-doc python-pyparsing-doc python3-cryptography
python3-openssl python3-socks python-requests-doc python-scipy-doc
python-setuptools-doc texlive-fonts-extra python-sympy-doc tix
python3-tk-dbg python3.12-venv python3.12-doc binfmt-support python3.13-venv
python3.13-doc readline-doc
Recommended packages:
gnupg | sq | sqop | pgpainless-cli | sequoia-chameleon-gnupg
libalgorithm-merge-perl curl | wget | lynx bzip2-doc manpages manpages-dev
libfile-fcntllock-perl liblocale-gettext-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs javascript-common
krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules
libtasn1-doc libltdl-dev libmail-sendmail-perl python3-bs4 python3-cssselect
python3-html5lib python3-bottleneck python3-numexpr python3-odf
python3-openpyxl python3-tables python3-jinja2 python3-olefile
python3-pygments isympy-common
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev binutils
binutils-aarch64-linux-gnu binutils-common blt bsdextrautils build-essential
bzip2 ca-certificates cpp cpp-14 cpp-14-aarch64-linux-gnu
cpp-aarch64-linux-gnu cython3 debhelper dh-autoreconf dh-python
dh-strip-nondeterminism dpkg-dev dumb-init dwz fakeroot file
fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx g++ g++-14
g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libasan8 libatomic1
libbinutils libblas3 libbrotli-dev libbrotli1 libbz2-dev libc-dev-bin
libc6-dev libcc1-0 libcrypt-dev libctf-nobfd0 libctf0 libcurl3t64-gnutls
libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0
libdpkg-perl libelf1t64 libevent-2.1-7t64 libexpat1 libexpat1-dev
libfakeroot libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libfribidi0 libgcc-14-dev libgdbm-compat4t64 libgdbm6t64 libgfortran5
libglib2.0-0t64 libgmp-dev libgmpxx4ldbl libgnutls-dane0t64
libgnutls-openssl27t64 libgnutls28-dev libgomp1 libgprofng0 libgraphite2-3
libgssapi-krb5-2 libharfbuzz0b libhts-dev libhts3t64 libhtscodecs2
libhwasan0 libicu72 libidn2-dev libimagequant0 libisl23 libitm1 libjansson4
libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
liblapack3 liblbfgsb0 liblcms2-2 libldap-2.5-0 liblerc4 liblsan0 liblzma-dev
libmagic-mgc libmagic1t64 libmpc3 libmpfr6 libncursesw6 libnghttp2-14
libnghttp2-dev libnghttp3-9 libnghttp3-dev libngtcp2-16
libngtcp2-crypto-gnutls-dev libngtcp2-crypto-gnutls8 libngtcp2-dev libnsl2
libopenjp2-7 libp11-kit-dev libperl5.40 libpipeline1 libpkgconf3
libpng16-16t64 libpsl-dev libpsl5t64 libpython3-all-dev libpython3-dev
libpython3-stdlib libpython3.12-dev libpython3.12-minimal
libpython3.12-stdlib libpython3.12t64 libpython3.13 libpython3.13-dev
libpython3.13-minimal libpython3.13-stdlib libqhull-r8.0 libraqm0
libreadline8t64 librtmp-dev librtmp1 libsasl2-2 libsasl2-modules-db
libsframe1 libsharpyuv0 libsqlite3-0 libssh2-1-dev libssh2-1t64 libssl-dev
libstdc++-14-dev libtasn1-6-dev libtcl8.6 libtiff6 libtirpc-common
libtirpc3t64 libtk8.6 libtool libtsan2 libubsan1 libuchardet0 libunbound8
libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1
libyaml-0-2 libzstd-dev linux-libc-dev m4 make man-db media-types netbase
nettle-dev openssl patch perl perl-modules-5.40 pkgconf pkgconf-bin
po-debconf python-matplotlib-data python3 python3-all python3-all-dev
python3-appdirs python3-attr python3-autocommand python3-bioframe
python3-brotli python3-certifi python3-chardet python3-charset-normalizer
python3-click python3-colorama python3-contourpy python3-cycler
python3-dateutil python3-decorator python3-dev python3-exceptiongroup
python3-fonttools python3-fs python3-idna python3-inflect python3-iniconfig
python3-jaraco.context python3-jaraco.functools python3-jaraco.text
python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
python3-minimal python3-more-itertools python3-mpmath python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-pil
python3-pil.imagetk python3-pkg-resources python3-pluggy python3-pyparsing
python3-pysam python3-pytest python3-requests python3-scipy
python3-setuptools python3-six python3-sympy python3-tk python3-typeguard
python3-typing-extensions python3-tz python3-ufolib2 python3-urllib3
python3-yaml python3-zipp python3.12 python3.12-dev python3.12-minimal
python3.12-tk python3.13 python3.13-dev python3.13-minimal python3.13-tk
readline-common rpcsvc-proto sbuild-build-depends-main-dummy sensible-utils
tk8.6-blt2.5 unicode-data x11-common xz-utils zlib1g-dev
0 upgraded, 277 newly installed, 0 to remove and 0 not upgraded.
Need to get 184 MB/219 MB of archives.
After this operation, 1023 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1008 B]
Get:2 file:/<<BUILDDIR>>/resolver-ViGnin/apt_archive ./ python3-minimal 3.12.6-1+debusine1 [26.8 kB]
Get:3 file:/<<BUILDDIR>>/resolver-ViGnin/apt_archive ./ libpython3-stdlib 3.12.6-1+debusine1 [9732 B]
Get:4 file:/<<BUILDDIR>>/resolver-ViGnin/apt_archive ./ python3 3.12.6-1+debusine1 [27.8 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 perl-modules-5.40 all 5.40.0-6 [3022 kB]
Get:6 file:/<<BUILDDIR>>/resolver-ViGnin/apt_archive ./ cython3 3.0.11+dfsg-1+debusine1 [2724 kB]
Get:7 file:/<<BUILDDIR>>/resolver-ViGnin/apt_archive ./ libpython3-dev 3.12.6-1+debusine1 [9992 B]
Get:8 file:/<<BUILDDIR>>/resolver-ViGnin/apt_archive ./ libpython3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:9 file:/<<BUILDDIR>>/resolver-ViGnin/apt_archive ./ python3-all 3.12.6-1+debusine1 [1056 B]
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Get:12 file:/<<BUILDDIR>>/resolver-ViGnin/apt_archive ./ python3-numpy 1:1.26.4+ds-11+bd1 [3816 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 libgdbm6t64 arm64 1.24-2 [74.0 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libgdbm-compat4t64 arm64 1.24-2 [50.3 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 libperl5.40 arm64 5.40.0-6 [4149 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 perl arm64 5.40.0-6 [267 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.3-2 [90.1 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 netbase all 6.4 [12.8 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2 [124 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB]
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Get:25 http://deb.debian.org/debian sid/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B]
Get:26 http://deb.debian.org/debian sid/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB]
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Get:28 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 readline-common all 8.2-5 [69.3 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 libreadline8t64 arm64 8.2-5 [159 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 libsqlite3-0 arm64 3.46.1-1 [852 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB]
Get:35 file:/<<BUILDDIR>>/resolver-ViGnin/apt_archive ./ python3-scipy 1.13.1-5+nocheck1 [18.1 MB]
Get:36 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-1 [671 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 libpython3.13-minimal arm64 3.13.0-1 [849 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 python3.13-minimal arm64 3.13.0-1 [1835 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 sensible-utils all 0.0.24 [24.8 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 bzip2 arm64 1.0.8-6 [39.5 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 openssl arm64 3.3.2-2 [1347 kB]
Get:42 file:/<<BUILDDIR>>/resolver-ViGnin/apt_archive ./ python3-pandas-lib 2.2.3+dfsg-4+bd1 [6028 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 ca-certificates all 20240203 [158 kB]
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Get:51 file:/<<BUILDDIR>>/resolver-ViGnin/apt_archive ./ python3-pysam 0.22.1+ds-2+debusine1 [3880 kB]
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Get:74 http://deb.debian.org/debian sid/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 libxau6 arm64 1:1.0.9-1+b1 [18.1 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 libxdmcp6 arm64 1:1.1.2-3+b1 [24.3 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 libxcb1 arm64 1.17.0-2 [143 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 libx11-data all 2:1.8.7-1 [328 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 libx11-6 arm64 2:1.8.7-1+b1 [775 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 libxrender1 arm64 1:0.9.10-1.1+b1 [27.0 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 libxft2 arm64 2.3.6-1+b1 [51.0 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 x11-common all 1:7.7+23.1 [216 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 libxss1 arm64 1:1.2.3-1+b1 [17.0 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B]
Get:91 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.5-1 [2443 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:96 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:97 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b1 [674 kB]
Get:98 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b2 [50.2 kB]
Get:99 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-7 [9164 kB]
Get:100 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-7 [1280 B]
Get:101 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:102 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:103 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-7 [42.2 kB]
Get:104 http://deb.debian.org/debian sid/main arm64 libgomp1 arm64 14.2.0-7 [124 kB]
Get:105 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-7 [24.2 kB]
Get:106 http://deb.debian.org/debian sid/main arm64 libatomic1 arm64 14.2.0-7 [10.1 kB]
Get:107 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-7 [2578 kB]
Get:108 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-7 [1162 kB]
Get:109 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-7 [2386 kB]
Get:110 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-7 [1040 kB]
Get:111 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-7 [1442 kB]
Get:112 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-7 [2365 kB]
Get:113 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-7 [17.7 MB]
Get:114 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-7 [517 kB]
Get:115 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:116 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:117 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-7 [2265 kB]
Get:118 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-7 [10.1 MB]
Get:119 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-7 [20.0 kB]
Get:120 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:121 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:122 http://deb.debian.org/debian sid/main arm64 make arm64 4.3-4.1+b1 [372 kB]
Get:123 http://deb.debian.org/debian sid/main arm64 libdpkg-perl all 1.22.11 [644 kB]
Get:124 http://deb.debian.org/debian sid/main arm64 patch arm64 2.7.6-7+b1 [118 kB]
Get:125 http://deb.debian.org/debian sid/main arm64 dpkg-dev all 1.22.11 [1332 kB]
Get:126 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:127 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:128 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-7 [517 kB]
Get:129 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:130 http://deb.debian.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:131 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:132 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:133 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:134 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:135 http://deb.debian.org/debian sid/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB]
Get:136 http://deb.debian.org/debian sid/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB]
Get:137 http://deb.debian.org/debian sid/main arm64 gettext arm64 0.22.5-2 [1532 kB]
Get:138 http://deb.debian.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:139 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:140 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:141 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:142 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:143 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:144 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.4.0-1 [36.9 kB]
Get:145 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:146 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:147 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:148 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB]
Get:149 http://deb.debian.org/debian sid/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get:150 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:151 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 75.2.0-1 [731 kB]
Get:152 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20241024 [109 kB]
Get:153 http://deb.debian.org/debian sid/main arm64 dumb-init arm64 1.2.5-3 [13.4 kB]
Get:154 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:155 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:156 http://deb.debian.org/debian sid/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB]
Get:157 http://deb.debian.org/debian sid/main arm64 libblas3 arm64 3.12.0-3+b1 [98.9 kB]
Get:158 http://deb.debian.org/debian sid/main arm64 libbrotli-dev arm64 1.1.0-2+b5 [308 kB]
Get:159 http://deb.debian.org/debian sid/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB]
Get:160 http://deb.debian.org/debian sid/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB]
Get:161 http://deb.debian.org/debian sid/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB]
Get:162 http://deb.debian.org/debian sid/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB]
Get:163 http://deb.debian.org/debian sid/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB]
Get:164 http://deb.debian.org/debian sid/main arm64 libnghttp3-9 arm64 1.4.0-1 [59.5 kB]
Get:165 http://deb.debian.org/debian sid/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB]
Get:166 http://deb.debian.org/debian sid/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB]
Get:167 http://deb.debian.org/debian sid/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB]
Get:168 http://deb.debian.org/debian sid/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b4 [56.7 kB]
Get:169 http://deb.debian.org/debian sid/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get:170 http://deb.debian.org/debian sid/main arm64 libcurl3t64-gnutls arm64 8.10.1-2 [328 kB]
Get:171 http://deb.debian.org/debian sid/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB]
Get:172 http://deb.debian.org/debian sid/main arm64 libunbound8 arm64 1.22.0-1 [553 kB]
Get:173 http://deb.debian.org/debian sid/main arm64 libgnutls-dane0t64 arm64 3.8.6-2+b1 [437 kB]
Get:174 http://deb.debian.org/debian sid/main arm64 libgnutls-openssl27t64 arm64 3.8.6-2+b1 [437 kB]
Get:175 http://deb.debian.org/debian sid/main arm64 libidn2-dev arm64 2.3.7-2 [122 kB]
Get:176 http://deb.debian.org/debian sid/main arm64 libp11-kit-dev arm64 0.25.5-2 [208 kB]
Get:177 http://deb.debian.org/debian sid/main arm64 libtasn1-6-dev arm64 4.19.0-3+b2 [96.2 kB]
Get:178 http://deb.debian.org/debian sid/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b2 [329 kB]
Get:179 http://deb.debian.org/debian sid/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b2 [621 kB]
Get:180 http://deb.debian.org/debian sid/main arm64 nettle-dev arm64 3.10-1 [1323 kB]
Get:181 http://deb.debian.org/debian sid/main arm64 libgnutls28-dev arm64 3.8.6-2+b1 [1398 kB]
Get:182 http://deb.debian.org/debian sid/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB]
Get:183 http://deb.debian.org/debian sid/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB]
Get:184 http://deb.debian.org/debian sid/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB]
Get:185 http://deb.debian.org/debian sid/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB]
Get:186 http://deb.debian.org/debian sid/main arm64 libnghttp3-dev arm64 1.4.0-1 [85.3 kB]
Get:187 http://deb.debian.org/debian sid/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.6.0-1 [23.7 kB]
Get:188 http://deb.debian.org/debian sid/main arm64 libngtcp2-dev arm64 1.6.0-1 [165 kB]
Get:189 http://deb.debian.org/debian sid/main arm64 libpsl-dev arm64 0.21.2-1.1 [77.7 kB]
Get:190 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB]
Get:191 http://deb.debian.org/debian sid/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b4 [67.3 kB]
Get:192 http://deb.debian.org/debian sid/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB]
Get:193 http://deb.debian.org/debian sid/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB]
Get:194 http://deb.debian.org/debian sid/main arm64 libzstd-dev arm64 1.5.6+dfsg-1 [330 kB]
Get:195 http://deb.debian.org/debian sid/main arm64 libcurl4-gnutls-dev arm64 8.10.1-2 [456 kB]
Get:196 http://deb.debian.org/debian sid/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB]
Get:197 http://deb.debian.org/debian sid/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB]
Get:198 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-2 [142 kB]
Get:199 http://deb.debian.org/debian sid/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB]
Get:200 http://deb.debian.org/debian sid/main arm64 libgfortran5 arm64 14.2.0-7 [361 kB]
Get:201 http://deb.debian.org/debian sid/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB]
Get:202 http://deb.debian.org/debian sid/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB]
Get:203 http://deb.debian.org/debian sid/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB]
Get:204 http://deb.debian.org/debian sid/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB]
Get:205 http://deb.debian.org/debian sid/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB]
Get:206 http://deb.debian.org/debian sid/main arm64 liblzma-dev arm64 5.6.3-1 [312 kB]
Get:207 http://deb.debian.org/debian sid/main arm64 libhts-dev arm64 1.20+ds-2 [1626 kB]
Get:208 http://deb.debian.org/debian sid/main arm64 libimagequant0 arm64 2.18.0-1+b1 [34.6 kB]
Get:209 http://deb.debian.org/debian sid/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB]
Get:210 http://deb.debian.org/debian sid/main arm64 libjpeg62-turbo arm64 1:2.1.5-3 [172 kB]
Get:211 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:212 http://deb.debian.org/debian sid/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:213 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:214 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB]
Get:215 http://deb.debian.org/debian sid/main arm64 liblapack3 arm64 3.12.0-3+b1 [1812 kB]
Get:216 http://deb.debian.org/debian sid/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB]
Get:217 http://deb.debian.org/debian sid/main arm64 liblcms2-2 arm64 2.16-2 [151 kB]
Get:218 http://deb.debian.org/debian sid/main arm64 liblerc4 arm64 4.0.0+ds-4+b2 [154 kB]
Get:219 http://deb.debian.org/debian sid/main arm64 libopenjp2-7 arm64 2.5.0-2+b3 [177 kB]
Get:220 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:221 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:222 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:223 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:224 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:225 http://deb.debian.org/debian sid/main arm64 libqhull-r8.0 arm64 2020.2-6+b1 [226 kB]
Get:226 http://deb.debian.org/debian sid/main arm64 libraqm0 arm64 0.10.1-1+b1 [13.7 kB]
Get:227 http://deb.debian.org/debian sid/main arm64 libsharpyuv0 arm64 1.4.0-0.1 [111 kB]
Get:228 http://deb.debian.org/debian sid/main arm64 libwebp7 arm64 1.4.0-0.1 [267 kB]
Get:229 http://deb.debian.org/debian sid/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB]
Get:230 http://deb.debian.org/debian sid/main arm64 libwebpdemux2 arm64 1.4.0-0.1 [110 kB]
Get:231 http://deb.debian.org/debian sid/main arm64 libwebpmux3 arm64 1.4.0-0.1 [122 kB]
Get:232 http://deb.debian.org/debian sid/main arm64 libxslt1.1 arm64 1.1.35-1.1 [221 kB]
Get:233 http://deb.debian.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.5-1+b1 [49.0 kB]
Get:234 http://deb.debian.org/debian sid/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB]
Get:235 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:236 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:237 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
Get:238 http://deb.debian.org/debian sid/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB]
Get:239 http://deb.debian.org/debian sid/main arm64 python3-attr all 24.2.0-1 [68.4 kB]
Get:240 http://deb.debian.org/debian sid/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB]
Get:241 http://deb.debian.org/debian sid/main arm64 python3-pil arm64 10.4.0-1 [480 kB]
Get:242 http://deb.debian.org/debian sid/main arm64 python3.12-tk arm64 3.12.7-1 [110 kB]
Get:243 http://deb.debian.org/debian sid/main arm64 python3.13-tk arm64 3.13.0-1 [101 kB]
Get:244 http://deb.debian.org/debian sid/main arm64 python3-tk arm64 3.12.6-1 [9428 B]
Get:245 http://deb.debian.org/debian sid/main arm64 python3-pil.imagetk arm64 10.4.0-1 [79.4 kB]
Get:246 http://deb.debian.org/debian sid/main arm64 python3-pyparsing all 3.1.2-1 [146 kB]
Get:247 http://deb.debian.org/debian sid/main arm64 python3-contourpy arm64 1.3.0-2 [191 kB]
Get:248 http://deb.debian.org/debian sid/main arm64 python3-cycler all 0.12.1-1 [9496 B]
Get:249 http://deb.debian.org/debian sid/main arm64 python3-brotli arm64 1.1.0-2+b5 [307 kB]
Get:250 http://deb.debian.org/debian sid/main arm64 python3-tz all 2024.1-2 [30.9 kB]
Get:251 http://deb.debian.org/debian sid/main arm64 python3-six all 1.16.0-7 [16.4 kB]
Get:252 http://deb.debian.org/debian sid/main arm64 python3-fs all 2.4.16-4 [95.4 kB]
Get:253 http://deb.debian.org/debian sid/main arm64 python3-lxml arm64 5.3.0-1 [1096 kB]
Get:254 http://deb.debian.org/debian sid/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b4 [25.1 kB]
Get:255 http://deb.debian.org/debian sid/main arm64 python3-decorator all 5.1.1-5 [15.1 kB]
Get:256 http://deb.debian.org/debian sid/main arm64 python3-mpmath all 1.3.0-1 [419 kB]
Get:257 http://deb.debian.org/debian sid/main arm64 python3-sympy all 1.13.3-1 [4147 kB]
Get:258 http://deb.debian.org/debian sid/main arm64 python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB]
Get:259 http://deb.debian.org/debian sid/main arm64 unicode-data all 15.1.0-1 [8547 kB]
Get:260 http://deb.debian.org/debian sid/main arm64 python3-fonttools arm64 4.54.1-4 [1356 kB]
Get:261 http://deb.debian.org/debian sid/main arm64 python3-kiwisolver arm64 1.4.7-2 [56.7 kB]
Get:262 http://deb.debian.org/debian sid/main arm64 python3-packaging all 24.1-1 [45.8 kB]
Get:263 http://deb.debian.org/debian sid/main arm64 python3-matplotlib arm64 3.8.3-3 [5509 kB]
Get:264 http://deb.debian.org/debian sid/main arm64 python3-pandas all 2.2.3+dfsg-4 [3096 kB]
Get:265 http://deb.debian.org/debian sid/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B]
Get:266 http://deb.debian.org/debian sid/main arm64 python3-charset-normalizer arm64 3.4.0-1 [112 kB]
Get:267 http://deb.debian.org/debian sid/main arm64 python3-idna all 3.8-2 [41.6 kB]
Get:268 http://deb.debian.org/debian sid/main arm64 python3-urllib3 all 2.0.7-2 [111 kB]
Get:269 http://deb.debian.org/debian sid/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB]
Get:270 http://deb.debian.org/debian sid/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB]
Get:271 http://deb.debian.org/debian sid/main arm64 python3-bioframe all 0.4.1-1 [71.6 kB]
Get:272 http://deb.debian.org/debian sid/main arm64 python3-colorama all 0.4.6-4 [36.2 kB]
Get:273 http://deb.debian.org/debian sid/main arm64 python3-click all 8.1.7-2 [94.3 kB]
Get:274 http://deb.debian.org/debian sid/main arm64 python3-exceptiongroup all 1.2.2-1 [19.7 kB]
Get:275 http://deb.debian.org/debian sid/main arm64 python3-iniconfig all 1.1.1-2 [6396 B]
Get:276 http://deb.debian.org/debian sid/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB]
Get:277 http://deb.debian.org/debian sid/main arm64 python3-pytest all 8.3.3-1 [249 kB]
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Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up gcc-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ...
Setting up g++-14-aarch64-linux-gnu (14.2.0-7) ...
Setting up libpython3.12-stdlib:arm64 (3.12.7-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up blt (2.5.3+dfsg-7+b1) ...
Setting up python3.12 (3.12.7-1) ...
Setting up gcc-14 (14.2.0-7) ...
Setting up libpython3.12t64:arm64 (3.12.7-1) ...
Setting up libpython3.13-dev:arm64 (3.13.0-1) ...
Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b4) ...
Setting up libssh2-1-dev:arm64 (1.11.1-1) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up g++-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up g++-14 (14.2.0-7) ...
Setting up libpython3-stdlib:arm64 (3.12.6-1+debusine1) ...
Setting up libtool (2.4.7-7) ...
Setting up python3.13-dev (3.13.0-1) ...
Setting up python3 (3.12.6-1+debusine1) ...
Setting up libpython3.12-dev:arm64 (3.12.7-1) ...
Setting up python3-zipp (3.20.2-1) ...
Setting up libcurl4-gnutls-dev:arm64 (8.10.1-2) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up python3-tz (2024.1-2) ...
Setting up gcc (4:14.2.0-1) ...
Setting up python3-six (1.16.0-7) ...
Setting up dh-autoreconf (20) ...
Setting up python3-pil:arm64 (10.4.0-1) ...
Setting up python3-decorator (5.1.1-5) ...
Setting up python3-packaging (24.1-1) ...
Setting up python3-pyparsing (3.1.2-1) ...
Setting up python3-certifi (2024.8.30+dfsg-1) ...
Setting up python3-brotli (1.1.0-2+b5) ...
Setting up python3-cycler (0.12.1-1) ...
Setting up python3-kiwisolver (1.4.7-2) ...
Setting up python3-idna (3.8-2) ...
Setting up python3.12-dev (3.12.7-1) ...
Setting up cython3 (3.0.11+dfsg-1+debusine1) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up python3-urllib3 (2.0.7-2) ...
Setting up python3-pluggy (1.5.0-1) ...
Setting up g++ (4:14.2.0-1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up python3-lxml:arm64 (5.3.0-1) ...
Setting up python3-exceptiongroup (1.2.2-1) ...
Setting up build-essential (12.12) ...
Setting up python3-dateutil (2.9.0-3) ...
Setting up python3-mpmath (1.3.0-1) ...
Setting up python3-appdirs (1.4.4-4) ...
Setting up python3-more-itertools (10.5.0-1) ...
Setting up python3-iniconfig (1.1.1-2) ...
Setting up python3-sympy (1.13.3-1) ...
Setting up python3-attr (24.2.0-1) ...
Setting up python3-pysam (0.22.1+ds-2+debusine1) ...
Setting up libpython3-dev:arm64 (3.12.6-1+debusine1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up python3-colorama (0.4.6-4) ...
Setting up python3-lz4 (4.0.2+dfsg-1+b4) ...
Setting up python3-charset-normalizer (3.4.0-1) ...
Setting up python3-pytest (8.3.3-1) ...
Setting up python3-typeguard (4.4.0-1) ...
Setting up libhts-dev:arm64 (1.20+ds-2) ...
Setting up python3-all (3.12.6-1+debusine1) ...
Setting up python3-yaml (6.0.2-1+debusine1) ...
Setting up python3-tk:arm64 (3.12.6-1) ...
Setting up debhelper (13.20) ...
Setting up python3-click (8.1.7-2) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-pil.imagetk:arm64 (10.4.0-1) ...
Setting up libpython3-all-dev:arm64 (3.12.6-1+debusine1) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-dev (3.12.6-1+debusine1) ...
Setting up python3-pkg-resources (75.2.0-1) ...
Setting up python3-all-dev (3.12.6-1+debusine1) ...
Setting up python3-setuptools (75.2.0-1) ...
Setting up python3-fs (2.4.16-4) ...
Setting up python3-chardet (5.2.0+dfsg-1) ...
Setting up python3-requests (2.32.3+dfsg-1) ...
Setting up python3-numpy (1:1.26.4+ds-11+bd1) ...
Setting up python3-contourpy (1.3.0-2) ...
Setting up dh-python (6.20241024) ...
Setting up python3-scipy (1.13.1-5+nocheck1) ...
Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-4+bd1) ...
Setting up python3-pandas (2.2.3+dfsg-4) ...
Setting up python3-fonttools (4.54.1-4) ...
Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
Setting up python3-matplotlib (3.8.3-3) ...
Setting up python3-bioframe (0.4.1-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.40-3) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-7 gcc-14_14.2.0-7 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-7 libstdc++6_14.2.0-7 linux-libc-dev_6.11.5-1
Package versions: apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 blt_2.5.3+dfsg-7+b1 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-7 cpp-14-aarch64-linux-gnu_14.2.0-7 cpp-aarch64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-1+debusine1 dash_0.5.12-9+b1 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20+b1 dh-autoreconf_20 dh-python_6.20241024 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dumb-init_1.2.5-3 dwz_0.15-1+b1 e2fsprogs_1.47.1-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 fontconfig-config_2.15.0-1.1+b1 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lyx_2.4.2.1-1 g++_4:14.2.0-1 g++-14_14.2.0-7 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python3-exceptiongroup_1.2.2-1 python3-fonttools_4.54.1-4 python3-fs_2.4.16-4 python3-idna_3.8-2 python3-inflect_7.3.1-2 python3-iniconfig_1.1.1-2 python3-jaraco.context_6.0.0-1 python3-jaraco.functools_4.1.0-1 python3-jaraco.text_4.0.0-1 python3-kiwisolver_1.4.7-2 python3-lxml_5.3.0-1 python3-lz4_4.0.2+dfsg-1+b4 python3-matplotlib_3.8.3-3 python3-minimal_3.12.6-1+debusine1 python3-more-itertools_10.5.0-1 python3-mpmath_1.3.0-1 python3-numpy_1:1.26.4+ds-11+bd1 python3-packaging_24.1-1 python3-pandas_2.2.3+dfsg-4 python3-pandas-lib_2.2.3+dfsg-4+bd1 python3-pil_10.4.0-1 python3-pil.imagetk_10.4.0-1 python3-pkg-resources_75.2.0-1 python3-pluggy_1.5.0-1 python3-pyparsing_3.1.2-1 python3-pysam_0.22.1+ds-2+debusine1 python3-pytest_8.3.3-1 python3-requests_2.32.3+dfsg-1 python3-scipy_1.13.1-5+nocheck1 python3-setuptools_75.2.0-1 python3-six_1.16.0-7 python3-sympy_1.13.3-1 python3-tk_3.12.6-1 python3-typeguard_4.4.0-1 python3-typing-extensions_4.12.2-2 python3-tz_2024.1-2 python3-ufolib2_0.16.0+dfsg1-1 python3-urllib3_2.0.7-2 python3-yaml_6.0.2-1+debusine1 python3-zipp_3.20.2-1 python3.12_3.12.7-1 python3.12-dev_3.12.7-1 python3.12-minimal_3.12.7-1 python3.12-tk_3.12.7-1 python3.13_3.13.0-1 python3.13-dev_3.13.0-1 python3.13-minimal_3.13.0-1 python3.13-tk_3.13.0-1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.11-1 tar_1.35+dfsg-3 tk8.6-blt2.5_2.5.3+dfsg-7+b1 tzdata_2024b-3 unicode-data_15.1.0-1 util-linux_2.40.2-9 x11-common_1:7.7+23.1 xz-utils_5.6.3-1 zlib1g_1:1.3.dfsg+really1.3.1-1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: pairtools
Binary: python3-pairtools, python3-pairtools-examples
Architecture: any
Version: 1.0.3-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Antoni Villalonga <antoni@friki.cat>
Homepage: https://github.com/mirnylab/pairtools
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/pairtools
Vcs-Git: https://salsa.debian.org/med-team/pairtools.git
Testsuite: autopkgtest
Testsuite-Triggers: python3-pytest
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, cython3, python3-setuptools, python3-bioframe, python3-click, python3-exceptiongroup, python3-numpy, python3-pandas, python3-pysam (>= 0.20.0+ds-3~), python3-pytest <!nocheck>, python3-scipy, libhts-dev, python3-yaml <!nocheck>
Package-List:
python3-pairtools deb python optional arch=any
python3-pairtools-examples deb python optional arch=any
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Files:
efbc84583dc040e29d89ade8011af32b 1254538 pairtools_1.0.3.orig.tar.gz
f939bf4581a15151d20bed08c2063855 7084 pairtools_1.0.3-1.debian.tar.xz
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gpgv: Signature made Mon Dec 11 14:44:59 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./pairtools_1.0.3-1.dsc: no acceptable signature found
dpkg-source: info: extracting pairtools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking pairtools_1.0.3.orig.tar.gz
dpkg-source: info: unpacking pairtools_1.0.3-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying makefile
dpkg-source: info: applying fix-spelling
dpkg-source: info: applying tests-to-python3
dpkg-source: info: applying fix-pysam-ftbfs.patch
dpkg-source: info: applying do-not-run-coverage.patch
dpkg-source: info: applying no_install_depends_cython.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.0.3-1+bd1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
OLDPWD=/
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/<<PKGBUILDDIR>>
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package pairtools
dpkg-buildpackage: info: source version 1.0.3-1+bd1
dpkg-buildpackage: info: source distribution sid
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean --with numpy3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:311: python3.13 setup.py clean
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/pairtools/lib/regions.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling /<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.pyx because it changed.
Compiling /<<PKGBUILDDIR>>/pairtools/lib/regions.pyx because it changed.
Compiling /<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.pyx because it changed.
[1/3] Cythonizing /<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.pyx
[2/3] Cythonizing /<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.pyx
[3/3] Cythonizing /<<PKGBUILDDIR>>/pairtools/lib/regions.pyx
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
I: pybuild base:311: python3.12 setup.py clean
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build' (and everything under it)
'build/bdist.linux-aarch64' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
rm -f pairtools/lib/*.c pairtools/lib/regions.cpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with numpy3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
dh_auto_configure -a -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py config
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.pxd
tree = Parsing.p_module(s, pxd, full_module_name)
/usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /<<PKGBUILDDIR>>/pairtools/lib/regions.pyx
tree = Parsing.p_module(s, pxd, full_module_name)
Compiling /<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.pyx because it changed.
Compiling /<<PKGBUILDDIR>>/pairtools/lib/regions.pyx because it changed.
Compiling /<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.pyx because it changed.
[1/3] Cythonizing /<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.pyx
[2/3] Cythonizing /<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.pyx
[3/3] Cythonizing /<<PKGBUILDDIR>>/pairtools/lib/regions.pyx
running config
I: pybuild base:311: python3.12 setup.py config
running config
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.13 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools
copying pairtools/_logging.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools
copying pairtools/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools
copying pairtools/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
copying pairtools/lib/dedup.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
copying pairtools/lib/scaling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
copying pairtools/lib/fileio.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
copying pairtools/lib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
copying pairtools/lib/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
copying pairtools/lib/pairsam_format.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
copying pairtools/lib/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
copying pairtools/lib/filterbycov.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
copying pairtools/lib/phase.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
copying pairtools/lib/headerops.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
copying pairtools/lib/select.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
copying pairtools/lib/restrict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/flip.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/dedup.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/header.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/sample.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/parse2.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/scaling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/merge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/split.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/sort.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/filterbycov.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/phase.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/markasdup.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/select.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
copying pairtools/cli/restrict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/cli
running build_ext
building 'pairtools.lib.parse_pysam' extension
creating build/temp.linux-aarch64-cpython-313/<<PKGBUILDDIR>>/pairtools/lib
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipairtools/lib -I/usr/lib/python3/dist-packages/pysam -I/usr/lib/python3/dist-packages/pysam/include/samtools -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.c -o build/temp.linux-aarch64-cpython-313/<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.o
/<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.c:3259:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
3259 | Py_UNICODE *as_pyunicodes;
| ^~~~~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib/parse_pysam.cpython-313-aarch64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabixproxies.cpython-313-aarch64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcfaidx.cpython-313-aarch64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcsamfile.cpython-313-aarch64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcvcf.cpython-313-aarch64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcbcf.cpython-313-aarch64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabix.cpython-313-aarch64-linux-gnu.so
building 'pairtools.lib.regions' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /<<PKGBUILDDIR>>/pairtools/lib/regions.cpp -o build/temp.linux-aarch64-cpython-313/<<PKGBUILDDIR>>/pairtools/lib/regions.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from /<<PKGBUILDDIR>>/pairtools/lib/regions.cpp:1302:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
/<<PKGBUILDDIR>>/pairtools/lib/regions.cpp:2634:21: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations]
2634 | Py_UNICODE *as_pyunicodes;
| ^~~~~~~~~~~~~
In file included from /usr/include/python3.13/unicodeobject.h:1014,
from /usr/include/python3.13/Python.h:79,
from /<<PKGBUILDDIR>>/pairtools/lib/regions.cpp:30:
/usr/include/python3.13/cpython/unicodeobject.h:10:37: note: declared here
10 | Py_DEPRECATED(3.13) typedef wchar_t Py_UNICODE;
| ^~~~~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/<<PKGBUILDDIR>>/pairtools/lib/regions.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib/regions.cpython-313-aarch64-linux-gnu.so
building 'pairtools.lib.dedup_cython' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.c -o build/temp.linux-aarch64-cpython-313/<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from /<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.c:1240:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/pairtools/lib/dedup_cython.cpython-313-aarch64-linux-gnu.so
I: pybuild base:311: /usr/bin/python3 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools
copying pairtools/_logging.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools
copying pairtools/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools
copying pairtools/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
copying pairtools/lib/dedup.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
copying pairtools/lib/scaling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
copying pairtools/lib/fileio.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
copying pairtools/lib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
copying pairtools/lib/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
copying pairtools/lib/pairsam_format.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
copying pairtools/lib/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
copying pairtools/lib/filterbycov.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
copying pairtools/lib/phase.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
copying pairtools/lib/headerops.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
copying pairtools/lib/select.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
copying pairtools/lib/restrict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/flip.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/dedup.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/header.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/sample.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/parse2.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/scaling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/merge.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/split.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/parse.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/sort.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/filterbycov.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/phase.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/markasdup.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/select.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
copying pairtools/cli/restrict.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/cli
running build_ext
building 'pairtools.lib.parse_pysam' extension
creating build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pairtools/lib
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipairtools/lib -I/usr/lib/python3/dist-packages/pysam -I/usr/lib/python3/dist-packages/pysam/include/samtools -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.c -o build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.o
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pairtools/lib/parse_pysam.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib/parse_pysam.cpython-312-aarch64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabixproxies.cpython-312-aarch64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcfaidx.cpython-312-aarch64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcsamfile.cpython-312-aarch64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcvcf.cpython-312-aarch64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcbcf.cpython-312-aarch64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabix.cpython-312-aarch64-linux-gnu.so
building 'pairtools.lib.regions' extension
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /<<PKGBUILDDIR>>/pairtools/lib/regions.cpp -o build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pairtools/lib/regions.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from /<<PKGBUILDDIR>>/pairtools/lib/regions.cpp:1302:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pairtools/lib/regions.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib/regions.cpython-312-aarch64-linux-gnu.so
building 'pairtools.lib.dedup_cython' extension
aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.c -o build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.o
In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5,
from /<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.c:1240:
/usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/<<PKGBUILDDIR>>/pairtools/lib/dedup_cython.o -L/usr/lib/aarch64-linux-gnu -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib/dedup_cython.cpython-312-aarch64-linux-gnu.so
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test -- --system=custom --test-args="export CURPY={interpreter}; \
cd {build_dir} && {interpreter} -m pytest -v"
I: pybuild base:311: export CURPY=python3.13; cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build && python3.13 -m pytest -v
============================= test session starts ==============================
platform linux -- Python 3.13.0, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.13
cachedir: .pytest_cache
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build
configfile: pytest.ini
testpaths: tests
plugins: typeguard-4.4.0
collecting ... collected 17 items / 2 errors
==================================== ERRORS ====================================
___________________ ERROR collecting tests/test_headerops.py ___________________
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/tests/test_headerops.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_headerops.py:2: in <module>
from pairtools.lib import headerops
pairtools/lib/__init__.py:1: in <module>
from . import fileio
pairtools/lib/fileio.py:2: in <module>
import pipes
E ModuleNotFoundError: No module named 'pipes'
____________________ ERROR collecting tests/test_select.py _____________________
ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build/tests/test_select.py'.
Hint: make sure your test modules/packages have valid Python names.
Traceback:
/usr/lib/python3.13/importlib/__init__.py:88: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_select.py:6: in <module>
from pairtools.lib import pairsam_format
pairtools/lib/__init__.py:1: in <module>
from . import fileio
pairtools/lib/fileio.py:2: in <module>
import pipes
E ModuleNotFoundError: No module named 'pipes'
=========================== short test summary info ============================
ERROR tests/test_headerops.py
ERROR tests/test_select.py
!!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!!
============================== 2 errors in 0.51s ===============================
E: pybuild pybuild:389: test: plugin custom failed with: exit code=2: export CURPY=python3.13; cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/build && python3.13 -m pytest -v
I: pybuild base:311: export CURPY=python3.12; cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build && python3.12 -m pytest -v
============================= test session starts ==============================
platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 -- /usr/bin/python3.12
cachedir: .pytest_cache
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build
configfile: pytest.ini
testpaths: tests
plugins: typeguard-4.4.0
collecting ... collected 31 items
tests/test_dedup.py::test_mock_pairsam PASSED [ 3%]
tests/test_filterbycov.py::test_mock_pairs PASSED [ 6%]
tests/test_flip.py::test_flip PASSED [ 9%]
tests/test_header.py::test_generate PASSED [ 12%]
tests/test_headerops.py::test_make_standard_header PASSED [ 16%]
tests/test_headerops.py::test_samheaderops PASSED [ 19%]
tests/test_headerops.py::test_merge_pairheaders PASSED [ 22%]
tests/test_headerops.py::test_merge_different_pairheaders PASSED [ 25%]
tests/test_headerops.py::test_force_merge_pairheaders PASSED [ 29%]
tests/test_headerops.py::test_merge_samheaders PASSED [ 32%]
tests/test_headerops.py::test_merge_headers PASSED [ 35%]
tests/test_markasdup.py::test_mock_pairsam PASSED [ 38%]
tests/test_merge.py::test_mock_pairsam PASSED [ 41%]
tests/test_parse.py::test_python_version PASSED [ 45%]
tests/test_parse.py::test_mock_pysam PASSED [ 48%]
tests/test_parse.py::test_mock_pysam_parse_all PASSED [ 51%]
tests/test_parse2.py::test_mock_pysam_parse2_read PASSED [ 54%]
tests/test_parse2.py::test_mock_pysam_parse2_pair PASSED [ 58%]
tests/test_restrict.py::test_restrict PASSED [ 61%]
tests/test_scaling.py::test_scaling PASSED [ 64%]
tests/test_select.py::test_preserve PASSED [ 67%]
tests/test_select.py::test_equal PASSED [ 70%]
tests/test_select.py::test_csv PASSED [ 74%]
tests/test_select.py::test_wildcard PASSED [ 77%]
tests/test_select.py::test_regex PASSED [ 80%]
tests/test_select.py::test_chrom_subset PASSED [ 83%]
tests/test_select.py::test_remove_columns PASSED [ 87%]
tests/test_sort.py::test_mock_pairsam PASSED [ 90%]
tests/test_split.py::test_split PASSED [ 93%]
tests/test_stats.py::test_mock_pairsam PASSED [ 96%]
tests/test_stats.py::test_merge_stats PASSED [100%]
=============================== warnings summary ===============================
pairtools/lib/fileio.py:2
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib/fileio.py:2: DeprecationWarning: 'pipes' is deprecated and slated for removal in Python 3.13
import pipes
pairtools/lib/stats.py:928
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/pairtools/lib/stats.py:928: SyntaxWarning: invalid escape sequence '\w'
"""Extract the name of the tile for each read name in the series
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================= 31 passed, 2 warnings in 38.63s ========================
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.13 3.12" --system=custom "--test-args=export CURPY={interpreter}; cd {build_dir} && {interpreter} -m pytest -v" returned exit code 13
make[1]: *** [debian/rules:16: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:9: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2024-11-01T04:45:10Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: any
Build-Space: 21760
Build-Time: 85
Distribution: sid
Fail-Stage: build
Host Architecture: arm64
Install-Time: 116
Job: /tmp/debusine-fetch-exec-upload-wjlnjb5x/pairtools_1.0.3-1.dsc
Machine Architecture: arm64
Package: pairtools
Package-Time: 242
Source-Version: 1.0.3-1
Space: 21760
Status: attempted
Version: 1.0.3-1+bd1
--------------------------------------------------------------------------------
Finished at 2024-11-01T04:45:10Z
Build needed 00:04:02, 21760k disk space