deb_control_files:
- control
- md5sums
deb_fields:
Architecture: arm64
Depends: libboost-iostreams1.83.0 (>= 1.83.0), libbpp-core4t64 (>= 2.4.1), libbpp-phyl-omics3t64
(>= 2.4.1), libbpp-phyl12t64 (>= 2.4.1), libbpp-seq-omics3t64 (>= 2.4.1), libbpp-seq12t64
(>= 2.4.1), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1)
Description: |-
process genome alignment in the Multiple Alignment Format
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
Homepage: https://jydu.github.io/maffilter/
Installed-Size: '1369'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: maffilter
Priority: optional
Section: science
Source: maffilter (1.3.1+dfsg-6)
Suggests: maffilter-examples
Version: 1.3.1+dfsg-6+b1
srcpkg_name: maffilter
srcpkg_version: 1.3.1+dfsg-6