deb_control_files:
- control
- md5sums
deb_fields:
Architecture: arm64
Depends: python3 (<< 3.13), python3 (>= 3.12~), libblas3 | libblas.so.3, libboost-program-options1.83.0
(>= 1.83.0), libboost-serialization1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1
(>= 3.0), liblapack3 | liblapack.so.3, libpng16-16t64 (>= 1.6.2), libpython3.12t64
(>= 3.12.1), libspoa7.0.0 (>= 4.1.4), libstdc++6 (>= 14), ncbi-blast+
Description: "nanopore whole genome assembly (dynamic library)\n De novo assembly\
\ from Oxford Nanopore reads. The goal of the Shasta long\n read assembler is\
\ to rapidly produce accurate assembled sequence using\n as input DNA reads generated\
\ by Oxford Nanopore flow cells.\n .\n Computational methods used by the Shasta\
\ assembler include:\n .\n * Using a run-length representation of the read sequence.\
\ This makes\n the assembly process more resilient to errors in homopolymer\n\
\ repeat counts, which are the most common type of errors in Oxford\n Nanopore\
\ reads.\n .\n * Using in some phases of the computation a representation of\
\ the read\n sequence based on markers, a fixed subset of short k-mers (k \u2248\
\ 10).\n .\n Shasta assembly quality is comparable or better than assembly quality\n\
\ achieved by other long read assemblers.\n .\n This package contains the dynamic\
\ library that can be interfaced and\n imported within Python."
Homepage: https://github.com/chanzuckerberg/shasta
Installed-Size: '7742'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: python3-shasta
Priority: optional
Section: python
Source: shasta (0.12.0-1)
Version: 0.12.0-1+b2
srcpkg_name: shasta
srcpkg_version: 0.12.0-1