deb_control_files:
- control
- md5sums
deb_fields:
Architecture: arm64
Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libhts3t64 (>= 1.17), libstdc++6 (>=
13.1), perl:any, r-base-core, bowtie | bowtie2, python3
Description: "RNA-Seq by Expectation-Maximization\n RSEM is a software package for\
\ estimating gene and isoform expression\n levels from RNA-Seq data. The RSEM\
\ package provides an user-friendly\n interface, supports threads for parallel\
\ computation of the EM\n algorithm, single-end and paired-end read data, quality\
\ scores,\n variable-length reads and RSPD estimation. In addition, it provides\n\
\ posterior mean and 95% credibility interval estimates for expression\n levels.\
\ For visualization, It can generate BAM and Wiggle files in both\n transcript-coordinate\
\ and genomic-coordinate. Genomic-coordinate files\n can be visualized by both\
\ UCSC Genome browser and Broad Institute\u2019s\n Integrative Genomics Viewer\
\ (IGV). Transcript-coordinate files can be\n visualized by IGV. RSEM also has\
\ its own scripts to generate transcript\n read depth plots in pdf format. The\
\ unique feature of RSEM is, the read\n depth plots can be stacked, with read\
\ depth contributed to unique reads\n shown in black and contributed to multi-reads\
\ shown in red. In addition,\n models learned from data can also be visualized.\
\ Last but not least,\n RSEM contains a simulator."
Homepage: https://deweylab.github.io/RSEM/
Installed-Size: '37276'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: rsem
Priority: optional
Section: science
Source: rsem (1.3.3+dfsg-3)
Suggests: r-bioc-ebseq, hisat2
Version: 1.3.3+dfsg-3+b2
srcpkg_name: rsem
srcpkg_version: 1.3.3+dfsg-3