Artifact parsnp_2.0.6+dfsg-1+bd1_arm64-2024-11-04T14:48:45Z

Metadata
bd_uninstallable: null
filename: parsnp_2.0.6+dfsg-1+bd1_arm64-2024-11-04T14:48:45Z.build
source: parsnp
version: 2.0.6+dfsg-1

File

parsnp_2.0.6+dfsg-1+bd1_arm64-2024-11-04T14:48:45Z.build
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sbuild (Debian sbuild) 0.86.3~bpo12+1 (03 November 2024) on debusine-worker-arm64-demeter-05.freexian.com

+==============================================================================+
| parsnp 2.0.6+dfsg-1+bd1 (arm64)              Mon, 04 Nov 2024 14:48:45 +0000 |
+==============================================================================+

Package: parsnp
Version: 2.0.6+dfsg-1+bd1
Source Version: 2.0.6+dfsg-1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: any

I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/942323/system.tar.xz to /tmp/tmp.sbuild.zkd68pYmhs...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Chroot Setup Commands                                                        |
+------------------------------------------------------------------------------+


rm -f /etc/resolv.conf
----------------------


I: Finished running 'rm -f /etc/resolv.conf'.

Finished processing commands.
--------------------------------------------------------------------------------
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/libpython3-all-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/libpython3-all-dev_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/libpython3-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/libpython3-dev_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/libpython3-stdlib_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3-all-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3-all-dev_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3-all-venv_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3-all_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3-dbg_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3-dev_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3-full_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3-minimal_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3-nopie_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3-venv_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3_3.12.6-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/2to3_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/idle_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3-doc_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/python3-examples_3.12.6-1+debusine1_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/cython3-dbgsym_3.0.11+dfsg-1+debusine1_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zgecz58b/cython3_3.0.11+dfsg-1+debusine1_arm64.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/parsnp-nhsHTN/resolver-riX15P' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 file:/build/parsnp-nhsHTN/resolver-A3FOfF/apt_archive ./ InRelease
Ign:1 file:/build/parsnp-nhsHTN/resolver-A3FOfF/apt_archive ./ InRelease
Get:2 file:/build/parsnp-nhsHTN/resolver-A3FOfF/apt_archive ./ Release [609 B]
Get:2 file:/build/parsnp-nhsHTN/resolver-A3FOfF/apt_archive ./ Release [609 B]
Get:3 file:/build/parsnp-nhsHTN/resolver-A3FOfF/apt_archive ./ Release.gpg
Ign:3 file:/build/parsnp-nhsHTN/resolver-A3FOfF/apt_archive ./ Release.gpg
Get:4 file:/build/parsnp-nhsHTN/resolver-A3FOfF/apt_archive ./ Packages [23.7 kB]
Get:5 http://deb.debian.org/debian sid InRelease [202 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9944 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 Components [4921 kB]
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Reading package lists...
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Building dependency tree...
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The following packages will be upgraded:
  bsdextrautils bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 login
  mount util-linux
9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 2129 kB of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 http://deb.debian.org/debian sid/main arm64 bsdutils arm64 1:2.40.2-10 [104 kB]
Get:2 http://deb.debian.org/debian sid/main arm64 bsdextrautils arm64 2.40.2-10 [96.5 kB]
Get:3 http://deb.debian.org/debian sid/main arm64 libblkid1 arm64 2.40.2-10 [162 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 libmount1 arm64 2.40.2-10 [190 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 libsmartcols1 arm64 2.40.2-10 [135 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 mount arm64 2.40.2-10 [153 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libuuid1 arm64 2.40.2-10 [35.5 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 util-linux arm64 2.40.2-10 [1173 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 login arm64 1:4.16.0-2+really2.40.2-10 [79.8 kB]
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+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Local sources
-------------

/tmp/debusine-fetch-exec-upload-zgecz58b/parsnp_2.0.6+dfsg-1.dsc exists in /tmp/debusine-fetch-exec-upload-zgecz58b; copying to chroot
I: NOTICE: Log filtering will replace 'build/parsnp-nhsHTN/parsnp-2.0.6+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/parsnp-nhsHTN' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, libmuscle-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, libmuscle-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [699 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [731 B]
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Get:1 file:/<<BUILDDIR>>/resolver-A3FOfF/apt_archive ./ InRelease
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Get:3 file:/<<BUILDDIR>>/resolver-A3FOfF/apt_archive ./ Release.gpg
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Reading package lists...
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Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev build-essential cpp cpp-14
  cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz fakeroot g++ g++-14
  g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
  gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libc-dev-bin
  libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64 libexpat1
  libexpat1-dev libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev
  libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore
  liblsan0 libmpc3 libmpfr6 libmuscle-dev libmuscle1 libncursesw6 libnsl2
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
  libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13
  libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib
  libstdc++-14-dev libtirpc-common libtirpc3t64 libtool libtsan2 libubsan1
  linux-libc-dev m4 media-types po-debconf python3 python3-all python3-all-dev
  python3-autocommand python3-dev python3-inflect python3-jaraco.context
  python3-jaraco.functools python3-jaraco.text python3-minimal
  python3-more-itertools python3-pkg-resources python3-setuptools
  python3-typeguard python3-typing-extensions python3-zipp python3.12
  python3.12-dev python3.12-minimal python3.13 python3.13-dev
  python3.13-minimal rpcsvc-proto zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
  cpp-14-doc cython-doc dh-make flit python3-build python3-installer
  python3-wheel gcc-14-doc gcc-multilib manpages-dev flex bison gdb gcc-doc
  gdb-aarch64-linux-gnu libc-devtools glibc-doc libstdc++-14-doc libtool-doc
  gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl python3-doc
  python3-tk python3-venv python-setuptools-doc python3.12-venv python3.12-doc
  binfmt-support python3.13-venv python3.13-doc
Recommended packages:
  manpages manpages-dev libarchive-cpio-perl javascript-common libgpm2
  libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev build-essential cpp cpp-14
  cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cython3 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz fakeroot g++ g++-14
  g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
  gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libc-dev-bin
  libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64 libexpat1
  libexpat1-dev libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev
  libhwasan0 libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore
  liblsan0 libmpc3 libmpfr6 libmuscle-dev libmuscle1 libncursesw6 libnsl2
  libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.12-dev
  libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 libpython3.13
  libpython3.13-dev libpython3.13-minimal libpython3.13-stdlib
  libstdc++-14-dev libtirpc-common libtirpc3t64 libtool libtsan2 libubsan1
  linux-libc-dev m4 media-types po-debconf python3 python3-all python3-all-dev
  python3-autocommand python3-dev python3-inflect python3-jaraco.context
  python3-jaraco.functools python3-jaraco.text python3-minimal
  python3-more-itertools python3-pkg-resources python3-setuptools
  python3-typeguard python3-typing-extensions python3-zipp python3.12
  python3.12-dev python3.12-minimal python3.13 python3.13-dev
  python3.13-minimal rpcsvc-proto sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded.
Need to get 89.9 MB/92.7 MB of archives.
After this operation, 387 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B]
Get:2 file:/<<BUILDDIR>>/resolver-A3FOfF/apt_archive ./ python3-minimal 3.12.6-1+debusine1 [26.8 kB]
Get:3 file:/<<BUILDDIR>>/resolver-A3FOfF/apt_archive ./ libpython3-stdlib 3.12.6-1+debusine1 [9732 B]
Get:4 file:/<<BUILDDIR>>/resolver-A3FOfF/apt_archive ./ python3 3.12.6-1+debusine1 [27.8 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-1 [807 kB]
Get:6 file:/<<BUILDDIR>>/resolver-A3FOfF/apt_archive ./ cython3 3.0.11+dfsg-1+debusine1 [2724 kB]
Get:7 file:/<<BUILDDIR>>/resolver-A3FOfF/apt_archive ./ libpython3-dev 3.12.6-1+debusine1 [9992 B]
Get:8 file:/<<BUILDDIR>>/resolver-A3FOfF/apt_archive ./ libpython3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:9 file:/<<BUILDDIR>>/resolver-A3FOfF/apt_archive ./ python3-all 3.12.6-1+debusine1 [1056 B]
Get:10 file:/<<BUILDDIR>>/resolver-A3FOfF/apt_archive ./ python3-dev 3.12.6-1+debusine1 [26.1 kB]
Get:11 file:/<<BUILDDIR>>/resolver-A3FOfF/apt_archive ./ python3-all-dev 3.12.6-1+debusine1 [1084 B]
Get:12 http://deb.debian.org/debian sid/main arm64 libexpat1 arm64 2.6.3-2 [90.1 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 python3.12-minimal arm64 3.12.7-1 [1941 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 media-types all 10.1.0 [26.9 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 libncursesw6 arm64 6.5-2+b1 [125 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libpython3.12-stdlib arm64 3.12.7-1 [1901 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 python3.12 arm64 3.12.7-1 [671 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 libpython3.13-minimal arm64 3.13.0-1 [849 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 python3.13-minimal arm64 3.13.0-1 [1835 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 m4 arm64 1.4.19-4 [277 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 autoconf all 2.72-3 [493 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 autopoint all 0.22.5-2 [723 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:29 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.5-1 [2443 kB]
Get:30 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:31 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:33 http://deb.debian.org/debian sid/main arm64 libisl23 arm64 0.27-1 [601 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 libmpfr6 arm64 4.2.1-1+b2 [680 kB]
Get:35 http://deb.debian.org/debian sid/main arm64 libmpc3 arm64 1.3.1-1+b3 [50.5 kB]
Get:36 http://deb.debian.org/debian sid/main arm64 cpp-14-aarch64-linux-gnu arm64 14.2.0-8 [9166 kB]
Get:37 http://deb.debian.org/debian sid/main arm64 cpp-14 arm64 14.2.0-8 [1284 B]
Get:38 http://deb.debian.org/debian sid/main arm64 cpp-aarch64-linux-gnu arm64 4:14.2.0-1 [4832 B]
Get:39 http://deb.debian.org/debian sid/main arm64 cpp arm64 4:14.2.0-1 [1568 B]
Get:40 http://deb.debian.org/debian sid/main arm64 libcc1-0 arm64 14.2.0-8 [42.2 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 libitm1 arm64 14.2.0-8 [24.2 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-8 [2579 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-8 [1161 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-8 [2386 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-8 [1039 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-8 [1442 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 libgcc-14-dev arm64 14.2.0-8 [2365 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8 [17.7 MB]
Get:49 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-8 [519 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 gcc-aarch64-linux-gnu arm64 4:14.2.0-1 [1440 B]
Get:51 http://deb.debian.org/debian sid/main arm64 gcc arm64 4:14.2.0-1 [5136 B]
Get:52 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-8 [2267 kB]
Get:53 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8 [10.1 MB]
Get:54 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-8 [20.2 kB]
Get:55 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:56 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:57 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:58 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:59 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-8 [517 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:61 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:63 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:68 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.4.0-1 [36.9 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:73 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 python3-zipp all 3.20.2-1 [10.3 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 python3-setuptools all 75.2.0-1 [731 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 dh-python all 6.20241024 [109 kB]
Get:79 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:80 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:81 http://deb.debian.org/debian sid/main arm64 libexpat1-dev arm64 2.6.3-2 [142 kB]
Get:82 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:83 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:84 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB]
Get:85 http://deb.debian.org/debian sid/main arm64 libmuscle1 arm64 3.7+4565-8+b1 [236 kB]
Get:86 http://deb.debian.org/debian sid/main arm64 libmuscle-dev arm64 3.7+4565-8+b1 [296 kB]
Get:87 http://deb.debian.org/debian sid/main arm64 libpython3.12t64 arm64 3.12.7-1 [1982 kB]
Get:88 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get:89 http://deb.debian.org/debian sid/main arm64 libpython3.12-dev arm64 3.12.7-1 [4793 kB]
Get:90 http://deb.debian.org/debian sid/main arm64 libpython3.13-stdlib arm64 3.13.0-1 [1920 kB]
Get:91 http://deb.debian.org/debian sid/main arm64 libpython3.13 arm64 3.13.0-1 [1960 kB]
Get:92 http://deb.debian.org/debian sid/main arm64 libpython3.13-dev arm64 3.13.0-1 [4668 kB]
Get:93 http://deb.debian.org/debian sid/main arm64 python3.13 arm64 3.13.0-1 [730 kB]
Get:94 http://deb.debian.org/debian sid/main arm64 python3.12-dev arm64 3.12.7-1 [505 kB]
Get:95 http://deb.debian.org/debian sid/main arm64 python3.13-dev arm64 3.13.0-1 [504 kB]
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Setting up python3.13 (3.13.0-1) ...
Setting up libjs-sphinxdoc (7.4.7-4) ...
Setting up cpp-14-aarch64-linux-gnu (14.2.0-8) ...
Setting up libnsl2:arm64 (1.3.0-3+b3) ...
Setting up libc6-dev:arm64 (2.40-3) ...
Setting up libgcc-14-dev:arm64 (14.2.0-8) ...
Setting up libstdc++-14-dev:arm64 (14.2.0-8) ...
Setting up libpython3.12-stdlib:arm64 (3.12.7-1) ...
Setting up python3.12 (3.12.7-1) ...
Setting up libpython3.12t64:arm64 (3.12.7-1) ...
Setting up cpp-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up libexpat1-dev:arm64 (2.6.3-2) ...
Setting up cpp-14 (14.2.0-8) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up cpp (4:14.2.0-1) ...
Setting up gcc-14-aarch64-linux-gnu (14.2.0-8) ...
Setting up libpython3-stdlib:arm64 (3.12.6-1+debusine1) ...
Setting up gcc-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up g++-14-aarch64-linux-gnu (14.2.0-8) ...
Setting up python3 (3.12.6-1+debusine1) ...
Setting up libpython3.12-dev:arm64 (3.12.7-1) ...
Setting up python3-zipp (3.20.2-1) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up gcc-14 (14.2.0-8) ...
Setting up libpython3.13-dev:arm64 (3.13.0-1) ...
Setting up python3.12-dev (3.12.7-1) ...
Setting up cython3 (3.0.11+dfsg-1+debusine1) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up g++-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up g++-14 (14.2.0-8) ...
Setting up python3-more-itertools (10.5.0-1) ...
Setting up libpython3-dev:arm64 (3.12.6-1+debusine1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up libtool (2.4.7-8) ...
Setting up python3.13-dev (3.13.0-1) ...
Setting up python3-typeguard (4.4.0-1) ...
Setting up python3-all (3.12.6-1+debusine1) ...
Setting up gcc (4:14.2.0-1) ...
Setting up dh-autoreconf (20) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up libpython3-all-dev:arm64 (3.12.6-1+debusine1) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-dev (3.12.6-1+debusine1) ...
Setting up g++ (4:14.2.0-1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up build-essential (12.12) ...
Setting up python3-pkg-resources (75.2.0-1) ...
Setting up python3-all-dev (3.12.6-1+debusine1) ...
Setting up python3-setuptools (75.2.0-1) ...
Setting up debhelper (13.20) ...
Setting up dh-python (6.20241024) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for libc-bin (2.40-3) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-26-cloud-arm64 #1 SMP Debian 6.1.112-1 (2024-09-30) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 linux-libc-dev_6.11.5-1
Package versions: appstream_1.0.3-1+b1 apt_2.9.10 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-10 bsdutils_1:2.40.2-10 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-8 cpp-14-aarch64-linux-gnu_14.2.0-8 cpp-aarch64-linux-gnu_4:14.2.0-1 cython3_3.0.11+dfsg-1+debusine1 dash_0.5.12-9+b1 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20+b1 dh-autoreconf_20 dh-python_6.20241024 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1+b1 diffutils_1:3.10-1+b1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 e2fsprogs_1.47.1-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-8 g++-14-aarch64-linux-gnu_14.2.0-8 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-8 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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

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Hash: SHA512

Format: 3.0 (quilt)
Source: parsnp
Binary: parsnp
Architecture: any
Version: 2.0.6+dfsg-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: https://harvest.readthedocs.org/en/latest/content/parsnp.html
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/parsnp
Vcs-Git: https://salsa.debian.org/med-team/parsnp.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, libmuscle-dev
Package-List:
 parsnp deb science optional arch=any
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Dgit: b1f33fab8a21d578529f45157debacecaf0d9e3c debian archive/debian/2.0.6+dfsg-1 https://git.dgit.debian.org/parsnp

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gpgv: Signature made Sun Nov  3 15:53:42 2024 UTC
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv:                issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./parsnp_2.0.6+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting parsnp in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking parsnp_2.0.6+dfsg.orig.tar.xz
dpkg-source: info: unpacking parsnp_2.0.6+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying add_missing_interpreter_line.patch
dpkg-source: info: applying proper_calls_to_tools.patch
dpkg-source: info: applying drop_m64.patch
dpkg-source: info: applying fix_build_with_as-needed.patch
dpkg-source: info: applying non-versioned-libs.patch
dpkg-source: info: applying blhc-fix.patch
dpkg-source: info: applying py3-parsnp-libs.patch

Check disk space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 2.0.6+dfsg-1+bd1

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=debusine-worker

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -mDebusine Rebuild <debusine@example.net> -B -rfakeroot
dpkg-buildpackage: info: source package parsnp
dpkg-buildpackage: info: source version 2.0.6+dfsg-1+bd1
dpkg-buildpackage: info: source distribution sid
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
configure.ac:23: warning: AC_OUTPUT should be used without arguments.
configure.ac:23: You should run autoupdate.
configure.ac:3: installing './compile'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
src/Makefile.am:4: warning: source file './ext/iniFile.cpp' is in a subdirectory,
src/Makefile.am:4: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least one source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled.  For now, the corresponding output
automake: object file(s) will be placed in the top-level directory.  However, this
automake: behavior may change in a future Automake major version, with object
automake: files being placed in the same subdirectory as the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibilities.
src/Makefile.am: installing './depcomp'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7
	./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-libmuscle=/usr/include/libMUSCLE-3.7
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for libMUSCLE/muscle.h... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: executing depfiles commands
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a
	make -j8
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making all in src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I.   -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-MuscleInterface.o `test -f 'MuscleInterface.cpp' || echo './'`MuscleInterface.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I.   -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-parsnp.o `test -f 'parsnp.cpp' || echo './'`parsnp.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I.   -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-LCB.o `test -f 'LCB.cpp' || echo './'`LCB.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I.   -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-LCR.o `test -f 'LCR.cpp' || echo './'`LCR.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I.   -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-TMum.o `test -f 'TMum.cpp' || echo './'`TMum.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I.   -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-Converter.o `test -f 'Converter.cpp' || echo './'`Converter.cpp
g++ -DPACKAGE_NAME=\"parsnp\" -DPACKAGE_TARNAME=\"parsnp\" -DPACKAGE_VERSION=\"1.6.1\" -DPACKAGE_STRING=\"parsnp\ 1.6.1\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"parsnp\" -DVERSION=\"1.6.1\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -I.   -I/usr/include/libMUSCLE-3.7 -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parsnp_core-iniFile.o `test -f './ext/iniFile.cpp' || echo './'`./ext/iniFile.cpp
parsnp.cpp: In member function ‘void Aligner::writeOutput(std::string, std::vector<float>&)’:
parsnp.cpp:955:28: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 9 [-Wformat-overflow=]
  955 |                 sprintf(b,"%d",(int)z+1);// C-style string formed without null
      |                            ^~
parsnp.cpp:955:27: note: directive argument in the range [-2147483647, 2147483647]
  955 |                 sprintf(b,"%d",(int)z+1);// C-style string formed without null
      |                           ^~~~
In file included from /usr/include/stdio.h:970,
                 from /usr/include/c++/14/cstdio:42,
                 from /usr/include/c++/14/ext/string_conversions.h:45,
                 from /usr/include/c++/14/bits/basic_string.h:4154,
                 from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /usr/include/c++/14/iostream:41,
                 from parsnp.hh:14,
                 from parsnp.cpp:54:
In function ‘int sprintf(char*, const char*, ...)’,
    inlined from ‘void Aligner::writeOutput(std::string, std::vector<float>&)’ at parsnp.cpp:955:24:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 9
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -fopenmp -O2 -funroll-all-loops -fomit-frame-pointer -ftree-vectorize -std=gnu++0x -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard  -Wl,-z,relro -Wl,-z,now -o parsnp_core parsnp_core-MuscleInterface.o parsnp_core-parsnp.o parsnp_core-LCB.o parsnp_core-LCR.o parsnp_core-TMum.o parsnp_core-Converter.o parsnp_core-iniFile.o  -fopenmp -lstdc++ -lpthread -L/usr/include/libMUSCLE-3.7/lib -lMUSCLE
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Nothing to be done for 'all-am'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a
	make -j8 check "TESTSUITEFLAGS=-j8 --verbose" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making check in src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install --destdir=debian/parsnp/ -a
	make -j8 install DESTDIR=/<<BUILDDIR>>/parsnp-2.0.6\+dfsg/debian/parsnp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making install in src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
make[3]: Nothing to be done for 'install-data-am'.
 /usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/parsnp../bin'
  /usr/bin/install -c parsnp_core '/<<PKGBUILDDIR>>/debian/parsnp../bin'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -a
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installexamples -a
   dh_installman -a
   dh_python3 -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   debian/rules override_dh_fixperms
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_fixperms
chmod -x debian/parsnp/usr/share/parsnp/template.ini
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'parsnp' in '../parsnp_2.0.6+dfsg-1+bd1_arm64.deb'.
dpkg-deb: building package 'parsnp-dbgsym' in '../parsnp-dbgsym_2.0.6+dfsg-1+bd1_arm64.deb'.
 dpkg-genbuildinfo --build=any -O../parsnp_2.0.6+dfsg-1+bd1_arm64.buildinfo
 dpkg-genchanges --build=any -mDebusine Rebuild <debusine@example.net> -O../parsnp_2.0.6+dfsg-1+bd1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-11-04T14:50:34Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


parsnp_2.0.6+dfsg-1+bd1_arm64.changes:
--------------------------------------

Format: 1.8
Date: Mon, 04 Nov 2024 14:50:03 +0000
Source: parsnp (2.0.6+dfsg-1)
Binary: parsnp parsnp-dbgsym
Binary-Only: yes
Architecture: arm64
Version: 2.0.6+dfsg-1+bd1
Distribution: sid
Urgency: low
Maintainer: Debusine Rebuild <debusine@example.net>
Changed-By: Debusine Rebuild <debusine@example.net>
Description:
 parsnp     - rapid core genome multi-alignment
Changes:
 parsnp (2.0.6+dfsg-1+bd1) sid; urgency=low, binary-only=yes
 .
   * Append +bd1 to version number; no source changes
   * Binary-only non-maintainer upload for arm64; no source changes.
   * Rebuild for python3.13
Checksums-Sha1:
 58dc09e423e79689f275d01f872b0d828f3be7a5 1227272 parsnp-dbgsym_2.0.6+dfsg-1+bd1_arm64.deb
 be40c7e18288da9c76eaf4eb701c642c81db97be 7179 parsnp_2.0.6+dfsg-1+bd1_arm64.buildinfo
 c149efa5c03b27eff9b6d422cbf050f03bc4aa49 199868 parsnp_2.0.6+dfsg-1+bd1_arm64.deb
Checksums-Sha256:
 db731f1b819cfc9bc1b63b3a4ff1e96752d9bf1384f70eb8c9566b6856e28a9b 1227272 parsnp-dbgsym_2.0.6+dfsg-1+bd1_arm64.deb
 a712db22a86d2422a2e5d99e1b5b9a08313b54714420848549535b23bda7f6d1 7179 parsnp_2.0.6+dfsg-1+bd1_arm64.buildinfo
 b887d19a58913d2a1526fb3a932b088533685dddfa325cd1c542b63d5201aa69 199868 parsnp_2.0.6+dfsg-1+bd1_arm64.deb
Files:
 cca95a09d0d792b4f1dd9f224d3e60e8 1227272 debug optional parsnp-dbgsym_2.0.6+dfsg-1+bd1_arm64.deb
 f43291cd28edfbeb1863e133bf125a0c 7179 science optional parsnp_2.0.6+dfsg-1+bd1_arm64.buildinfo
 083a9b9d2f144c2137c047250a8bdc61 199868 science optional parsnp_2.0.6+dfsg-1+bd1_arm64.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: parsnp (2.0.6+dfsg-1)
Binary: parsnp parsnp-dbgsym
Architecture: arm64
Version: 2.0.6+dfsg-1+bd1
Binary-Only-Changes:
 parsnp (2.0.6+dfsg-1+bd1) sid; urgency=low, binary-only=yes
 .
   * Append +bd1 to version number; no source changes
   * Binary-only non-maintainer upload for arm64; no source changes.
   * Rebuild for python3.13
 .
  -- Debusine Rebuild <debusine@example.net>  Mon, 04 Nov 2024 14:50:03 +0000
Checksums-Md5:
 cca95a09d0d792b4f1dd9f224d3e60e8 1227272 parsnp-dbgsym_2.0.6+dfsg-1+bd1_arm64.deb
 083a9b9d2f144c2137c047250a8bdc61 199868 parsnp_2.0.6+dfsg-1+bd1_arm64.deb
Checksums-Sha1:
 58dc09e423e79689f275d01f872b0d828f3be7a5 1227272 parsnp-dbgsym_2.0.6+dfsg-1+bd1_arm64.deb
 c149efa5c03b27eff9b6d422cbf050f03bc4aa49 199868 parsnp_2.0.6+dfsg-1+bd1_arm64.deb
Checksums-Sha256:
 db731f1b819cfc9bc1b63b3a4ff1e96752d9bf1384f70eb8c9566b6856e28a9b 1227272 parsnp-dbgsym_2.0.6+dfsg-1+bd1_arm64.deb
 b887d19a58913d2a1526fb3a932b088533685dddfa325cd1c542b63d5201aa69 199868 parsnp_2.0.6+dfsg-1+bd1_arm64.deb
Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Mon, 04 Nov 2024 14:50:34 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
Installed-Build-Depends:
 autoconf (= 2.72-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.22.5-2),
 autotools-dev (= 20220109.1),
 base-files (= 13.5),
 base-passwd (= 3.6.5),
 bash (= 5.2.32-1+b2),
 binutils (= 2.43.1-5),
 binutils-aarch64-linux-gnu (= 2.43.1-5),
 binutils-common (= 2.43.1-5),
 bsdextrautils (= 2.40.2-10),
 bsdutils (= 1:2.40.2-10),
 build-essential (= 12.12),
 bzip2 (= 1.0.8-6),
 coreutils (= 9.5-1+b1),
 cpp (= 4:14.2.0-1),
 cpp-14 (= 14.2.0-8),
 cpp-14-aarch64-linux-gnu (= 14.2.0-8),
 cpp-aarch64-linux-gnu (= 4:14.2.0-1),
 cython3 (= 3.0.11+dfsg-1+debusine1),
 dash (= 0.5.12-9+b1),
 debconf (= 1.5.87),
 debhelper (= 13.20),
 debianutils (= 5.20+b1),
 dh-autoreconf (= 20),
 dh-python (= 6.20241024),
 dh-strip-nondeterminism (= 1.14.0-1),
 diffutils (= 1:3.10-1+b1),
 dpkg (= 1.22.11),
 dpkg-dev (= 1.22.11),
 dwz (= 0.15-1+b1),
 file (= 1:5.45-3+b1),
 findutils (= 4.10.0-3),
 g++ (= 4:14.2.0-1),
 g++-14 (= 14.2.0-8),
 g++-14-aarch64-linux-gnu (= 14.2.0-8),
 g++-aarch64-linux-gnu (= 4:14.2.0-1),
 gcc (= 4:14.2.0-1),
 gcc-14 (= 14.2.0-8),
 gcc-14-aarch64-linux-gnu (= 14.2.0-8),
 gcc-14-base (= 14.2.0-8),
 gcc-aarch64-linux-gnu (= 4:14.2.0-1),
 gettext (= 0.22.5-2),
 gettext-base (= 0.22.5-2),
 grep (= 3.11-4+b1),
 groff-base (= 1.23.0-5),
 gzip (= 1.12-1.1+b1),
 hostname (= 3.25),
 init-system-helpers (= 1.67),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.2-2+b1),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 14.2.0-8),
 libatomic1 (= 14.2.0-8),
 libattr1 (= 1:2.5.2-2),
 libaudit-common (= 1:4.0.1-2),
 libaudit1 (= 1:4.0.1-2),
 libbinutils (= 2.43.1-5),
 libblkid1 (= 2.40.2-10),
 libbz2-1.0 (= 1.0.8-6),
 libc-bin (= 2.40-3),
 libc-dev-bin (= 2.40-3),
 libc6 (= 2.40-3),
 libc6-dev (= 2.40-3),
 libcap-ng0 (= 0.8.5-3),
 libcap2 (= 1:2.66-5+b1),
 libcc1-0 (= 14.2.0-8),
 libcom-err2 (= 1.47.1-1+b1),
 libcrypt-dev (= 1:4.4.36-5),
 libcrypt1 (= 1:4.4.36-5),
 libctf-nobfd0 (= 2.43.1-5),
 libctf0 (= 2.43.1-5),
 libdb5.3t64 (= 5.3.28+dfsg2-9),
 libdebconfclient0 (= 0.273),
 libdebhelper-perl (= 13.20),
 libdpkg-perl (= 1.22.11),
 libelf1t64 (= 0.192-4),
 libexpat1 (= 2.6.3-2),
 libexpat1-dev (= 2.6.3-2),
 libffi8 (= 3.4.6-1),
 libfile-stripnondeterminism-perl (= 1.14.0-1),
 libgcc-14-dev (= 14.2.0-8),
 libgcc-s1 (= 14.2.0-8),
 libgdbm-compat4t64 (= 1.24-2),
 libgdbm6t64 (= 1.24-2),
 libgmp10 (= 2:6.3.0+dfsg-2+b2),
 libgomp1 (= 14.2.0-8),
 libgprofng0 (= 2.43.1-5),
 libgssapi-krb5-2 (= 1.21.3-3),
 libhwasan0 (= 14.2.0-8),
 libicu72 (= 72.1-5+b1),
 libisl23 (= 0.27-1),
 libitm1 (= 14.2.0-8),
 libjansson4 (= 2.14-2+b3),
 libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
 libjs-sphinxdoc (= 7.4.7-4),
 libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
 libk5crypto3 (= 1.21.3-3),
 libkeyutils1 (= 1.6.3-4),
 libkrb5-3 (= 1.21.3-3),
 libkrb5support0 (= 1.21.3-3),
 liblsan0 (= 14.2.0-8),
 liblzma5 (= 5.6.3-1+b1),
 libmagic-mgc (= 1:5.45-3+b1),
 libmagic1t64 (= 1:5.45-3+b1),
 libmd0 (= 1.1.0-2+b1),
 libmount1 (= 2.40.2-10),
 libmpc3 (= 1.3.1-1+b3),
 libmpfr6 (= 4.2.1-1+b2),
 libmuscle-dev (= 3.7+4565-8+b1),
 libmuscle1 (= 3.7+4565-8+b1),
 libncursesw6 (= 6.5-2+b1),
 libnsl2 (= 1.3.0-3+b3),
 libpam-modules (= 1.5.3-7+b1),
 libpam-modules-bin (= 1.5.3-7+b1),
 libpam-runtime (= 1.5.3-7),
 libpam0g (= 1.5.3-7+b1),
 libpcre2-8-0 (= 10.42-4+b2),
 libperl5.40 (= 5.40.0-6),
 libpipeline1 (= 1.5.8-1),
 libpython3-all-dev (= 3.12.6-1+debusine1),
 libpython3-dev (= 3.12.6-1+debusine1),
 libpython3-stdlib (= 3.12.6-1+debusine1),
 libpython3.12-dev (= 3.12.7-1),
 libpython3.12-minimal (= 3.12.7-1),
 libpython3.12-stdlib (= 3.12.7-1),
 libpython3.12t64 (= 3.12.7-1),
 libpython3.13 (= 3.13.0-1),
 libpython3.13-dev (= 3.13.0-1),
 libpython3.13-minimal (= 3.13.0-1),
 libpython3.13-stdlib (= 3.13.0-1),
 libreadline8t64 (= 8.2-5),
 libseccomp2 (= 2.5.5-1+b2),
 libselinux1 (= 3.7-3),
 libsframe1 (= 2.43.1-5),
 libsmartcols1 (= 2.40.2-10),
 libsqlite3-0 (= 3.46.1-1),
 libssl3t64 (= 3.3.2-2),
 libstdc++-14-dev (= 14.2.0-8),
 libstdc++6 (= 14.2.0-8),
 libsystemd0 (= 256.7-3),
 libtinfo6 (= 6.5-2+b1),
 libtirpc-common (= 1.3.4+ds-1.3),
 libtirpc3t64 (= 1.3.4+ds-1.3+b1),
 libtool (= 2.4.7-8),
 libtsan2 (= 14.2.0-8),
 libubsan1 (= 14.2.0-8),
 libuchardet0 (= 0.0.8-1+b2),
 libudev1 (= 256.7-3),
 libunistring5 (= 1.2-1+b1),
 libuuid1 (= 2.40.2-10),
 libxml2 (= 2.12.7+dfsg+really2.9.14-0.1),
 libzstd1 (= 1.5.6+dfsg-1+b1),
 linux-libc-dev (= 6.11.5-1),
 m4 (= 1.4.19-4),
 make (= 4.3-4.1+b1),
 man-db (= 2.13.0-1),
 mawk (= 1.3.4.20240905-1),
 media-types (= 10.1.0),
 ncurses-base (= 6.5-2),
 ncurses-bin (= 6.5-2+b1),
 netbase (= 6.4),
 openssl-provider-legacy (= 3.3.2-2),
 patch (= 2.7.6-7+b1),
 perl (= 5.40.0-6),
 perl-base (= 5.40.0-6),
 perl-modules-5.40 (= 5.40.0-6),
 po-debconf (= 1.0.21+nmu1),
 python3 (= 3.12.6-1+debusine1),
 python3-all (= 3.12.6-1+debusine1),
 python3-all-dev (= 3.12.6-1+debusine1),
 python3-autocommand (= 2.2.2-3),
 python3-dev (= 3.12.6-1+debusine1),
 python3-inflect (= 7.3.1-2),
 python3-jaraco.context (= 6.0.0-1),
 python3-jaraco.functools (= 4.1.0-1),
 python3-jaraco.text (= 4.0.0-1),
 python3-minimal (= 3.12.6-1+debusine1),
 python3-more-itertools (= 10.5.0-1),
 python3-pkg-resources (= 75.2.0-1),
 python3-setuptools (= 75.2.0-1),
 python3-typeguard (= 4.4.0-1),
 python3-typing-extensions (= 4.12.2-2),
 python3-zipp (= 3.20.2-1),
 python3.12 (= 3.12.7-1),
 python3.12-dev (= 3.12.7-1),
 python3.12-minimal (= 3.12.7-1),
 python3.13 (= 3.13.0-1),
 python3.13-dev (= 3.13.0-1),
 python3.13-minimal (= 3.13.0-1),
 readline-common (= 8.2-5),
 rpcsvc-proto (= 1.4.3-1+b1),
 sed (= 4.9-2+b1),
 sensible-utils (= 0.0.24),
 sysvinit-utils (= 3.11-1),
 tar (= 1.35+dfsg-3+b1),
 tzdata (= 2024b-3),
 util-linux (= 2.40.2-10),
 xz-utils (= 5.6.3-1+b1),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1),
 zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
 DEB_BUILD_OPTIONS="parallel=8"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 SOURCE_DATE_EPOCH="1730731803"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


parsnp-dbgsym_2.0.6+dfsg-1+bd1_arm64.deb
----------------------------------------

 new Debian package, version 2.0.
 size 1227272 bytes: control archive=544 bytes.
     400 bytes,    12 lines      control
     106 bytes,     1 lines      md5sums
 Package: parsnp-dbgsym
 Source: parsnp (2.0.6+dfsg-1)
 Version: 2.0.6+dfsg-1+bd1
 Auto-Built-Package: debug-symbols
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1243
 Depends: parsnp (= 2.0.6+dfsg-1+bd1)
 Section: debug
 Priority: optional
 Description: debug symbols for parsnp
 Build-Ids: d1c4e5ee276c161bfbaae5933fff681eb3353926

drwxr-xr-x root/root         0 2024-11-04 14:50 ./
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/lib/
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/lib/debug/
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/lib/debug/.build-id/d1/
-rw-r--r-- root/root   1261736 2024-11-04 14:50 ./usr/lib/debug/.build-id/d1/c4e5ee276c161bfbaae5933fff681eb3353926.debug
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/share/
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/share/doc/
lrwxrwxrwx root/root         0 2024-11-04 14:50 ./usr/share/doc/parsnp-dbgsym -> parsnp


parsnp_2.0.6+dfsg-1+bd1_arm64.deb
---------------------------------

 new Debian package, version 2.0.
 size 199868 bytes: control archive=2892 bytes.
    1124 bytes,    19 lines      control
    5832 bytes,    62 lines      md5sums
     259 bytes,    12 lines   *  postinst             #!/bin/sh
     372 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: parsnp
 Source: parsnp (2.0.6+dfsg-1)
 Version: 2.0.6+dfsg-1+bd1
 Architecture: arm64
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1947
 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libmuscle1 (>= 3.7+4565), libstdc++6 (>= 14), python3:any, python3-biopython, python3-numpy, python3-pyspoa, python3-tqdm, fasttree, harvest-tools, mummer, phipack, python3, raxml, time
 Recommends: python3-dendropy
 Section: science
 Priority: optional
 Homepage: https://harvest.readthedocs.org/en/latest/content/parsnp.html
 Description: rapid core genome multi-alignment
  Parsnp was designed to align the core genome of hundreds to thousands of
  bacterial genomes within a few minutes to few hours. Input can be both
  draft assemblies and finished genomes, and output includes variant (SNP)
  calls, core genome phylogeny and multi-alignments. Parsnp leverages
  contextual information provided by multi-alignments surrounding SNP
  sites for filtration/cleaning, in addition to existing tools for
  recombination detection/filtration and phylogenetic reconstruction.

drwxr-xr-x root/root         0 2024-11-04 14:50 ./
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/bin/
-rwxr-xr-x root/root     76687 2024-11-04 14:50 ./usr/bin/parsnp
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/lib/
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/lib/parsnp/
-rwxr-xr-x root/root    329936 2024-11-04 14:50 ./usr/lib/parsnp/parsnp_core
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/lib/python3/
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/lib/python3/dist-packages/
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/lib/python3/dist-packages/parsnp/
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-rw-r--r-- root/root      2538 2024-09-28 19:02 ./usr/lib/python3/dist-packages/parsnp/logger.py
-rw-r--r-- root/root     29109 2024-09-28 19:02 ./usr/lib/python3/dist-packages/parsnp/partition.py
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/share/
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/share/doc/
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/share/doc/parsnp/
-rw-r--r-- root/root       265 2024-11-03 15:39 ./usr/share/doc/parsnp/NEWS.gz
-rw-r--r-- root/root      2139 2024-09-28 19:02 ./usr/share/doc/parsnp/README.md.gz
-rw-r--r-- root/root       278 2024-11-03 15:39 ./usr/share/doc/parsnp/README.test
-rw-r--r-- root/root       223 2024-11-04 14:50 ./usr/share/doc/parsnp/changelog.Debian.arm64.gz
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-rw-r--r-- root/root      2096 2024-11-03 15:39 ./usr/share/doc/parsnp/copyright
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/share/doc/parsnp/examples/
drwxr-xr-x root/root         0 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/
drwxr-xr-x root/root         0 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/
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-rw-r--r-- root/root     30598 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Bisha_1_2012.fna
-rw-r--r-- root/root     30626 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Buraidah_1_2013.fna
-rw-r--r-- root/root     30630 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/EMC_2012.fna
-rw-r--r-- root/root     30633 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/England-Qatar_2012.fna
-rw-r--r-- root/root     30614 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/England1.fna
-rw-r--r-- root/root     30436 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/FRA-UAE.fna
-rw-r--r-- root/root     30655 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_1_2013.fna
-rw-r--r-- root/root     30605 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al-Batin_2_2013.fna
-rw-r--r-- root/root     30605 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Hafr-Al_Batin_6_2013.fna
-rw-r--r-- root/root     30685 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Indiana-USA-1_Saudi_Arabia_2014.fna
-rw-r--r-- root/root     30430 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jeddah_1_2013.fna
-rw-r--r-- root/root     30545 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Jordan-N3_2012.fna
-rw-r--r-- root/root     30645 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KF192507.1.fna
-rw-r--r-- root/root     30645 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_1.fna
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-rw-r--r-- root/root     30642 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KFU-HKU_19Dam.fna
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-rw-r--r-- root/root     30627 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/KSA-CAMEL-363.fna
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-rw-r--r-- root/root     30635 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/NC_019843.2.fna
-rw-r--r-- root/root     30626 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Qatar3.fna
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-rw-r--r-- root/root     30607 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/genomes/Wadi-Ad-Dawasir_1_2013.fna
drwxr-xr-x root/root         0 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/ref/
-rw-r--r-- root/root     30614 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/ref/England1.fna
-rw-r--r-- root/root     62794 2024-09-28 19:02 ./usr/share/doc/parsnp/examples/mers_virus/ref/England1.gbk
-rw-r--r-- root/root       769 2024-11-03 15:39 ./usr/share/doc/parsnp/run-unit-test
drwxr-xr-x root/root         0 2024-11-04 14:50 ./usr/share/man/
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-rw-r--r-- root/root       395 2024-09-28 19:02 ./usr/share/parsnp/template.ini


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Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-lintian-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 856 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [856 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 856 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-lintian-dummy.
(Reading database ... 26027 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ...
Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Running lintian...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: arm64
Build Type: any
Build-Space: 26304
Build-Time: 30
Distribution: sid
Host Architecture: arm64
Install-Time: 39
Job: /tmp/debusine-fetch-exec-upload-zgecz58b/parsnp_2.0.6+dfsg-1.dsc
Lintian: pass
Machine Architecture: arm64
Package: parsnp
Package-Time: 109
Source-Version: 2.0.6+dfsg-1
Space: 26304
Status: successful
Version: 2.0.6+dfsg-1+bd1
--------------------------------------------------------------------------------
Finished at 2024-11-04T14:50:34Z
Build needed 00:01:49, 26304k disk space

Relations

Relation Direction Type Name
relates-to Source package parsnp_2.0.6+dfsg-1
relates-to Binary package libpython3-all-dbg_3.12.6-1+debusine1_arm64
relates-to Binary package libpython3-all-dev_3.12.6-1+debusine1_arm64
relates-to Binary package libpython3-dbg_3.12.6-1+debusine1_arm64
relates-to Binary package libpython3-dev_3.12.6-1+debusine1_arm64
relates-to Binary package libpython3-stdlib_3.12.6-1+debusine1_arm64
relates-to Binary package python3-all-dbg_3.12.6-1+debusine1_arm64
relates-to Binary package python3-all-dev_3.12.6-1+debusine1_arm64
relates-to Binary package python3-all-venv_3.12.6-1+debusine1_arm64
relates-to Binary package python3-all_3.12.6-1+debusine1_arm64
relates-to Binary package python3-dbg_3.12.6-1+debusine1_arm64
relates-to Binary package python3-dev_3.12.6-1+debusine1_arm64
relates-to Binary package python3-full_3.12.6-1+debusine1_arm64
relates-to Binary package python3-minimal_3.12.6-1+debusine1_arm64
relates-to Binary package python3-nopie_3.12.6-1+debusine1_arm64
relates-to Binary package python3-venv_3.12.6-1+debusine1_arm64
relates-to Binary package python3_3.12.6-1+debusine1_arm64
relates-to Binary package 2to3_3.12.6-1+debusine1_all
relates-to Binary package idle_3.12.6-1+debusine1_all
relates-to Binary package python3-doc_3.12.6-1+debusine1_all
relates-to Binary package python3-examples_3.12.6-1+debusine1_all
relates-to Binary package cython3-dbgsym_3.0.11+dfsg-1+debusine1_arm64
relates-to Binary package cython3_3.0.11+dfsg-1+debusine1_arm64
relates-to Binary package parsnp-dbgsym_2.0.6+dfsg-1+bd1_arm64
relates-to Binary package parsnp_2.0.6+dfsg-1+bd1_arm64
relates-to Binary packages parsnp_2.0.6+dfsg-1

build log System… build a package… - 1 month, 2 weeks ago 2 weeks, 2 days
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