Uses of Enum Class
org.forester.surfacing.DomainSimilarityCalculator.Detailedness
Packages that use DomainSimilarityCalculator.Detailedness
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Uses of DomainSimilarityCalculator.Detailedness in org.forester.surfacing
Methods in org.forester.surfacing that return DomainSimilarityCalculator.DetailednessModifier and TypeMethodDescriptionReturns the enum constant of this class with the specified name.DomainSimilarityCalculator.Detailedness.values()
Returns an array containing the constants of this enum class, in the order they are declared.Methods in org.forester.surfacing with parameters of type DomainSimilarityCalculator.DetailednessModifier and TypeMethodDescriptionstatic void
SurfacingUtil.decoratePrintableDomainSimilarities
(SortedSet<DomainSimilarity> domain_similarities, DomainSimilarityCalculator.Detailedness detailedness) void
PairwiseGenomeComparator.performPairwiseComparisons
(StringBuilder html_desc, boolean sort_by_species_count_first, DomainSimilarityCalculator.Detailedness detailedness, boolean ignore_domains_without_combs_in_all_spec, boolean ignore_domains_specific_to_one_species, DomainSimilarity.DomainSimilaritySortField domain_similarity_sort_field, DomainSimilarity.PRINT_OPTION domain_similarity_print_option, DomainSimilarity.DomainSimilarityScoring scoring, Map<String, List<GoId>> domain_id_to_go_ids_map, Map<GoId, GoTerm> go_id_to_term_map, GoNameSpace go_namespace_limit, Species[] species, int number_of_genomes, List<GenomeWideCombinableDomains> list_of_genome_wide_combinable_domains, PairwiseDomainSimilarityCalculator pw_calc, String automated_pairwise_comparison_suffix, boolean verbose, String automated_pairwise_comparison_prefix, String command_line_prg_name, File out_dir, boolean write_pairwise_comparisons, Map<String, Integer> tax_code_to_id_map, boolean calc_similarity_scores, Phylogeny phy) void
DomainSimilarity.setDetailedness
(DomainSimilarityCalculator.Detailedness detailedness)