Uses of Interface
org.forester.surfacing.CombinableDomains
Packages that use CombinableDomains
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Uses of CombinableDomains in org.forester.surfacing
Classes in org.forester.surfacing that implement CombinableDomainsModifier and TypeClassDescriptionclass
class
class
Methods in org.forester.surfacing that return CombinableDomainsModifier and TypeMethodDescriptionMethods in org.forester.surfacing that return types with arguments of type CombinableDomainsModifier and TypeMethodDescriptionBasicGenomeWideCombinableDomains.getAllCombinableDomainsIds()
GenomeWideCombinableDomains.getAllCombinableDomainsIds()
Methods in org.forester.surfacing with parameters of type CombinableDomainsModifier and TypeMethodDescriptionCombinationsBasedPairwiseDomainSimilarityCalculator.calculateSimilarity
(CombinableDomains domains_1, CombinableDomains domains_2) DomainCountsBasedPairwiseSimilarityCalculator.calculateSimilarity
(CombinableDomains domains_1, CombinableDomains domains_2) PairwiseDomainSimilarityCalculator.calculateSimilarity
(CombinableDomains domains_1, CombinableDomains domains_2) ProteinCountsBasedPairwiseDomainSimilarityCalculator.calculateSimilarity
(CombinableDomains domains_1, CombinableDomains domains_2) Constructors in org.forester.surfacing with parameters of type CombinableDomainsModifierConstructorDescriptionDomainSimilarity
(CombinableDomains combinable_domains, double min, double max, double mean, double median, double sd, int n, int max_difference_in_counts, int max_difference, SortedMap<Species, org.forester.surfacing.SpeciesSpecificDcData> species_data, boolean sort_by_species_count_first, boolean treat_as_binary_comparison) DomainSimilarity
(CombinableDomains combinable_domains, int max_difference_in_counts, int max_difference, SortedMap<Species, org.forester.surfacing.SpeciesSpecificDcData> species_data, boolean sort_by_species_count_first, boolean treat_as_binary_comparison)