deb_control_files:
- control
- md5sums
deb_fields:
Architecture: all
Depends: fastp, fastqc, hisat2 | rna-star, libjs-jquery-datatables, libjs-jquery-tablesorter,
megadepth, multiqc, python3:any, python3-deeptools, python3-htseq, r-bioc-deseq2,
r-bioc-rtracklayer, r-bioc-summarizedexperiment, r-bioc-tximport, r-cran-corrplot,
r-cran-crosstalk, r-cran-data.table, r-cran-dt, r-cran-ggplot2, r-cran-ggpubr,
r-cran-ggrepel, r-cran-gprofiler2, r-cran-pheatmap, r-cran-plotly, r-cran-reshape2,
r-cran-rjson, r-cran-rlang, r-cran-rmarkdown, r-cran-scales, salmon, samtools,
snakemake, trim-galore
Description: |-
pipeline for checkpointed and distributed RNA-seq analyses
This package provides a automated workflow for the automated analysis of
RNA-seq experiments. A series of well-accecpted tools are connected in
Python scripts and controlled via snakemake. This supports the parallel
execution of these workflows and provides checkpointing, such that
interrupted workflows can take up their work again.
Homepage: https://github.com/BIMSBbioinfo/pigx_rnaseq
Installed-Size: '176'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: pigx-rnaseq
Priority: optional
Recommends: hisat2, rna-star
Section: science
Version: 0.1.1-1
srcpkg_name: pigx-rnaseq
srcpkg_version: 0.1.1-1