deb_control_files:
- control
- md5sums
deb_fields:
Architecture: amd64
Depends: python3 (<< 3.14), python3 (>= 3.12~)
Description: |-
1D/2D indexing and querying with a pair of genomic coordinates
Pairix is a tool for indexing and querying on a block-compressed text
file containing pairs of genomic coordinates.
.
Pairix is a stand-alone C program that was written on top of tabix as a
tool for the 4DN-standard pairs file format describing Hi-C data:
pairs_format_specification.md
.
However, Pairix can be used as a generic tool for indexing and querying
any bgzipped text file containing genomic coordinates, for either 2D- or
1D- indexing and querying.
.
For example: given the custom text file below, you want to extract
specific lines from the Pairs file further below. An awk command would
read the Pairs file from beginning to end. Pairix creates an index and
uses it to access the file from a relevant position by taking advantage
of bgzf compression, allowing for a fast query on large files.
Homepage: https://github.com/4dn-dcic/pairix
Installed-Size: '220'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Multi-Arch: same
Package: python3-pairix
Priority: optional
Section: python
Source: python-pairix (0.3.8-1)
Version: 0.3.8-1+b1
srcpkg_name: python-pairix
srcpkg_version: 0.3.8-1