sbuild (Debian sbuild) 0.86.3~bpo12+1 (03 November 2024) on debusine-worker-arm64-demeter-09.freexian.com
+==============================================================================+
| c2x 2.41.b+ds-2 (arm64) Fri, 15 Nov 2024 20:53:18 +0000 |
+==============================================================================+
Package: c2x
Version: 2.41.b+ds-2
Source Version: 2.41.b+ds-2
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: binary
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/957781/system.tar.xz to /tmp/tmp.sbuild.oot96sUvlX...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
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| Chroot Setup Commands |
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rm -f /etc/resolv.conf
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I: Finished running 'rm -f /etc/resolv.conf'.
Finished processing commands.
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Copying /tmp/debusine-fetch-exec-upload-h_p7vzdg/dpkg-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-h_p7vzdg/dpkg_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-h_p7vzdg/dselect-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-h_p7vzdg/dselect_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-h_p7vzdg/libdpkg-dev_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-h_p7vzdg/dpkg-dev_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-h_p7vzdg/libdpkg-perl_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/c2x-B5m5gu/resolver-e0C44U' with '<<RESOLVERDIR>>'
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| Update chroot |
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Get:1 file:/build/c2x-B5m5gu/resolver-Dwybte/apt_archive ./ InRelease
Ign:1 file:/build/c2x-B5m5gu/resolver-Dwybte/apt_archive ./ InRelease
Get:2 file:/build/c2x-B5m5gu/resolver-Dwybte/apt_archive ./ Release [606 B]
Get:3 http://deb.debian.org/debian sid InRelease [202 kB]
Get:2 file:/build/c2x-B5m5gu/resolver-Dwybte/apt_archive ./ Release [606 B]
Get:4 file:/build/c2x-B5m5gu/resolver-Dwybte/apt_archive ./ Release.gpg
Ign:4 file:/build/c2x-B5m5gu/resolver-Dwybte/apt_archive ./ Release.gpg
Get:5 file:/build/c2x-B5m5gu/resolver-Dwybte/apt_archive ./ Packages [9246 B]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9951 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 Components [4911 kB]
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Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
apt bsdextrautils bsdutils dpkg dpkg-dev libapt-pkg6.0t64 libaudit-common
libaudit1 libblkid1 libbrotli1 libcap-ng0 libdpkg-perl libglib2.0-0t64
libmount1 libpcre2-8-0 libseccomp2 libselinux1 libsemanage2 libsmartcols1
libuuid1 libxml2 login mount util-linux
24 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 7198 kB/10.7 MB of archives.
After this operation, 602 kB disk space will be freed.
Get:1 file:/build/c2x-B5m5gu/resolver-Dwybte/apt_archive ./ dpkg 1.22.12~1.gbp82cafd [1513 kB]
Get:2 http://deb.debian.org/debian sid/main arm64 bsdutils arm64 1:2.40.2-11 [104 kB]
Get:3 file:/build/c2x-B5m5gu/resolver-Dwybte/apt_archive ./ dpkg-dev 1.22.12~1.gbp82cafd [1337 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 libapt-pkg6.0t64 arm64 2.9.11 [921 kB]
Get:5 file:/build/c2x-B5m5gu/resolver-Dwybte/apt_archive ./ libdpkg-perl 1.22.12~1.gbp82cafd [647 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 libblkid1 arm64 2.40.2-11 [162 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 libmount1 arm64 2.40.2-11 [190 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libsmartcols1 arm64 2.40.2-11 [135 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 mount arm64 2.40.2-11 [153 kB]
Get:11 http://deb.debian.org/debian sid/main arm64 libuuid1 arm64 2.40.2-11 [35.7 kB]
Get:12 http://deb.debian.org/debian sid/main arm64 util-linux arm64 2.40.2-11 [1170 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 libpcre2-8-0 arm64 10.44-2 [242 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libselinux1 arm64 3.7-3+b1 [72.1 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 libseccomp2 arm64 2.5.5-1+b3 [46.8 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 apt arm64 2.9.11 [1287 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 libaudit-common all 1:4.0.2-2 [12.7 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libcap-ng0 arm64 0.8.5-3+b1 [17.0 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libaudit1 arm64 1:4.0.2-2 [54.2 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 login arm64 1:4.16.0-2+really2.40.2-11 [80.0 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libglib2.0-0t64 arm64 2.82.2-3 [1411 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libsemanage2 arm64 3.7-2+b1 [84.5 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up login (1:4.16.0-2+really2.40.2-11) ...
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Local sources
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/tmp/debusine-fetch-exec-upload-h_p7vzdg/c2x_2.41.b+ds-2.dsc exists in /tmp/debusine-fetch-exec-upload-h_p7vzdg; copying to chroot
I: NOTICE: Log filtering will replace 'build/c2x-B5m5gu/c2x-2.41.b+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/c2x-B5m5gu' with '<<BUILDDIR>>'
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| Install package build dependencies |
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Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libsymspg-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), libsymspg-dev, build-essential, fakeroot
dpkg-deb: warning: root directory has unusual owner or group 998:999.
Hint: either pass --root-owner-group, see dpkg-build-api(7) or add an explicit 'Rules-Requires-Root: no' in debian/control.
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Install main build dependencies (apt-based resolver)
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Installing build dependencies
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The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-strip-nondeterminism dwz fakeroot g++ g++-14 g++-14-aarch64-linux-gnu
g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
gcc-aarch64-linux-gnu libasan8 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libhwasan0 libisl23 libitm1 liblsan0 libmpc3 libmpfr6
libstdc++-14-dev libsymspg-dev libsymspg2 libtool libtsan2 libubsan1
linux-libc-dev m4 po-debconf rpcsvc-proto
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc dh-make gcc-14-doc gcc-multilib manpages-dev flex bison gdb
gcc-doc gdb-aarch64-linux-gnu libc-devtools glibc-doc libstdc++-14-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl
Recommended packages:
manpages manpages-dev libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-strip-nondeterminism dwz fakeroot g++ g++-14 g++-14-aarch64-linux-gnu
g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
gcc-aarch64-linux-gnu libasan8 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libhwasan0 libisl23 libitm1 liblsan0 libmpc3 libmpfr6
libstdc++-14-dev libsymspg-dev libsymspg2 libtool libtsan2 libubsan1
linux-libc-dev m4 po-debconf rpcsvc-proto sbuild-build-depends-main-dummy
0 upgraded, 49 newly installed, 0 to remove and 0 not upgraded.
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After this operation, 240 MB of additional disk space will be used.
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Get:37 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-8 [517 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
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Get:43 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
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Get:46 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
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Get:49 http://deb.debian.org/debian sid/main arm64 libsymspg-dev arm64 2.5.0-1 [36.9 kB]
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.12~1.gbp82cafd g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 linux-libc-dev_6.11.7-1
Package versions: appstream_1.0.3-1+b1 apt_2.9.11 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-11 bsdutils_1:2.40.2-11 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-8 cpp-14-aarch64-linux-gnu_14.2.0-8 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-9+b1 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20+b1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1+b1 diffutils_1:3.10-1+b1 dpkg_1.22.12~1.gbp82cafd dpkg-dev_1.22.12~1.gbp82cafd dwz_0.15-1+b1 e2fsprogs_1.47.1-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-8 g++-14-aarch64-linux-gnu_14.2.0-8 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-8 gcc-14-aarch64-linux-gnu_14.2.0-8 gcc-14-base_14.2.0-8 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: c2x
Binary: c2x
Architecture: any
Version: 2.41.b+ds-2
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Uploaders: Andrius Merkys <merkys@debian.org>,
Homepage: https://www.c2x.org.uk
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/debichem-team/c2x
Vcs-Git: https://salsa.debian.org/debichem-team/c2x.git
Testsuite: autopkgtest
Testsuite-Triggers: pdb2pqr-doc
Build-Depends: debhelper-compat (= 13), libsymspg-dev
Package-List:
c2x deb science optional arch=any
Checksums-Sha1:
1cb3d2628b8b9775970a0407097adde846ce0eb3 199516 c2x_2.41.b+ds.orig.tar.xz
0e64f866bc378e5dc28b898b26e637f01f088fa3 2580 c2x_2.41.b+ds-2.debian.tar.xz
Checksums-Sha256:
e4c8fbeb2a686a9a13b8a7684629ca8d23c0a12b840ad602d64e34ecf82a2705 199516 c2x_2.41.b+ds.orig.tar.xz
80501d01c33aa1ee519bc73bb3335b546ad0e558ea11e00ea3f0afa8d3926931 2580 c2x_2.41.b+ds-2.debian.tar.xz
Files:
b1905dd3d2cfc9584dcba891686a6a25 199516 c2x_2.41.b+ds.orig.tar.xz
f376404ebb2f88af13139d3ed89ce1f1 2580 c2x_2.41.b+ds-2.debian.tar.xz
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gpgv: Signature made Fri Feb 2 09:18:58 2024 UTC
gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287
gpgv: issuer "merkys@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./c2x_2.41.b+ds-2.dsc: no acceptable signature found
dpkg-source: info: extracting c2x in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking c2x_2.41.b+ds.orig.tar.xz
dpkg-source: info: unpacking c2x_2.41.b+ds-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying rm.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package c2x
dpkg-buildpackage: info: source version 2.41.b+ds-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andrius Merkys <merkys@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f c2x check2xsf.o check_read.o xsf_write.o molecule_fix.o cube_write.o cell_read.o periodic_table.o basis.o super.o xplor_write.o pdb_write.o cell_write.o dx_write.o vasp_write.o pdb_read.o xyz_write.o cml_write.o fdf_write.o gpfa.o rotate.o chdiff_read.o esp_read.o interpolate.o line_write.o shelx_read.o shelx_write.o fbin_write.o ident_sym.o primitive.o ksym.o f15.o cif_write.o cube_read.o cif_read.o c2x2spg.o sort_atoms.o py_write.o xsf_read.o vasp_read.o denfmt_write.o denfmt_read.o parse.o dipole.o fort34_read.o crystal_read.o abinit_read.o abinit_write.o abinit_in_read.o fdf_read.o qe_write.o qe_read.o parity.o potential.o qe_rho_read.o qe_xml_read.o dict.o charge.o qe_psi_read.o print_cell.o bands_write.o geom_write.o xv_read.o rho_read.o tube.o ccp4_write.o xc.o band_process.o gcoeff_write.o wavecar_write.o bxsf_write.o bands_read.o xyz_read.o gcoeff_read.o elk_write.o elk_read.o geom_read.o npy_read.o npy_write.o file_read.o data_combine.o dx_read.o mol_read.o mol_write.o zones.o grad.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
dh_auto_build
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o check2xsf.o check2xsf.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o check_read.o check_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xsf_write.o xsf_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o molecule_fix.o molecule_fix.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cube_write.o cube_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cell_read.o cell_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o periodic_table.o periodic_table.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o basis.o basis.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o super.o super.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xplor_write.o xplor_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o pdb_write.o pdb_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cell_write.o cell_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o dx_write.o dx_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o vasp_write.o vasp_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o pdb_read.o pdb_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xyz_write.o xyz_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cml_write.o cml_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o fdf_write.o fdf_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o gpfa.o gpfa.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o rotate.o rotate.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o chdiff_read.o chdiff_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o esp_read.o esp_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o interpolate.o interpolate.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o line_write.o line_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o shelx_read.o shelx_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o shelx_write.o shelx_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o fbin_write.o fbin_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o ident_sym.o ident_sym.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o primitive.o primitive.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o ksym.o ksym.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o f15.o f15.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cif_write.o cif_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cube_read.o cube_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o cif_read.o cif_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o c2x2spg.o c2x2spg.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o sort_atoms.o sort_atoms.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o py_write.o py_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xsf_read.o xsf_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o vasp_read.o vasp_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o denfmt_write.o denfmt_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o denfmt_read.o denfmt_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o parse.o parse.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o dipole.o dipole.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o fort34_read.o fort34_read.c
vasp_read.c: In function ‘vasp_read’:
vasp_read.c:203:13: warning: ‘*<unknown>’ may be used uninitialized [-Wmaybe-uninitialized]
203 | if(!nionsp[nspec-1])
| ~~~~~~^~~~~~~~~
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o crystal_read.o crystal_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o abinit_read.o abinit_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o abinit_write.o abinit_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o abinit_in_read.o abinit_in_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o fdf_read.o fdf_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o qe_write.o qe_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o qe_read.o qe_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o parity.o parity.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o potential.o potential.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o qe_rho_read.o qe_rho_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o qe_xml_read.o qe_xml_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o dict.o dict.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o charge.o charge.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o qe_psi_read.o qe_psi_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o print_cell.o print_cell.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o bands_write.o bands_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o geom_write.o geom_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xv_read.o xv_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o rho_read.o rho_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o tube.o tube.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o ccp4_write.o ccp4_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xc.o xc.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o band_process.o band_process.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o gcoeff_write.o gcoeff_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o wavecar_write.o wavecar_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o bxsf_write.o bxsf_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o bands_read.o bands_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o xyz_read.o xyz_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o gcoeff_read.o gcoeff_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o elk_write.o elk_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o elk_read.o elk_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o geom_read.o geom_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o npy_read.o npy_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o npy_write.o npy_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o file_read.o file_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o data_combine.o data_combine.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o dx_read.o dx_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o mol_read.o mol_read.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o mol_write.o mol_write.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o zones.o zones.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -c -o grad.o grad.c
gcc -Wall -Wno-unused-result -O -g -DSPGLIB -I. -L. -o c2x check2xsf.o check_read.o xsf_write.o molecule_fix.o cube_write.o cell_read.o periodic_table.o basis.o super.o xplor_write.o pdb_write.o cell_write.o dx_write.o vasp_write.o pdb_read.o xyz_write.o cml_write.o fdf_write.o gpfa.o rotate.o chdiff_read.o esp_read.o interpolate.o line_write.o shelx_read.o shelx_write.o fbin_write.o ident_sym.o primitive.o ksym.o f15.o cif_write.o cube_read.o cif_read.o c2x2spg.o sort_atoms.o py_write.o xsf_read.o vasp_read.o denfmt_write.o denfmt_read.o parse.o dipole.o fort34_read.o crystal_read.o abinit_read.o abinit_write.o abinit_in_read.o fdf_read.o qe_write.o qe_read.o parity.o potential.o qe_rho_read.o qe_xml_read.o dict.o charge.o qe_psi_read.o print_cell.o bands_write.o geom_write.o xv_read.o rho_read.o tube.o ccp4_write.o xc.o band_process.o gcoeff_write.o wavecar_write.o bxsf_write.o bands_read.o xyz_read.o gcoeff_read.o elk_write.o elk_read.o geom_read.o npy_read.o npy_write.o file_read.o data_combine.o dx_read.o mol_read.o mol_write.o zones.o grad.o -lm -lsymspg
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/c2x/
dh_install
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'c2x' in '../c2x_2.41.b+ds-2_arm64.deb'.
dpkg-deb: building package 'c2x-dbgsym' in '../c2x-dbgsym_2.41.b+ds-2_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../c2x_2.41.b+ds-2_arm64.buildinfo
dpkg-genchanges --build=binary -O../c2x_2.41.b+ds-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-11-15T20:54:17Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
c2x_2.41.b+ds-2_arm64.changes:
------------------------------
Format: 1.8
Date: Fri, 02 Feb 2024 04:15:48 -0500
Source: c2x
Binary: c2x c2x-dbgsym
Architecture: arm64
Version: 2.41.b+ds-2
Distribution: sid
Urgency: medium
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Changed-By: Andrius Merkys <merkys@debian.org>
Description:
c2x - converter between DFT electronic structure codes formats
Changes:
c2x (2.41.b+ds-2) unstable; urgency=medium
.
* Update package description.
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Files:
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: c2x
Binary: c2x c2x-dbgsym
Architecture: arm64
Version: 2.41.b+ds-2
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Fri, 15 Nov 2024 20:54:17 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.5),
bash (= 5.2.32-1+b2),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-11),
bsdutils (= 1:2.40.2-11),
build-essential (= 12.12),
bzip2 (= 1.0.8-6),
coreutils (= 9.5-1+b1),
cpp (= 4:14.2.0-1),
cpp-14 (= 14.2.0-8),
cpp-14-aarch64-linux-gnu (= 14.2.0-8),
cpp-aarch64-linux-gnu (= 4:14.2.0-1),
dash (= 0.5.12-9+b1),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.20+b1),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1+b1),
dpkg (= 1.22.12~1.gbp82cafd),
dpkg-dev (= 1.22.12~1.gbp82cafd),
dwz (= 0.15-1+b1),
file (= 1:5.45-3+b1),
findutils (= 4.10.0-3),
g++ (= 4:14.2.0-1),
g++-14 (= 14.2.0-8),
g++-14-aarch64-linux-gnu (= 14.2.0-8),
g++-aarch64-linux-gnu (= 4:14.2.0-1),
gcc (= 4:14.2.0-1),
gcc-14 (= 14.2.0-8),
gcc-14-aarch64-linux-gnu (= 14.2.0-8),
gcc-14-base (= 14.2.0-8),
gcc-aarch64-linux-gnu (= 4:14.2.0-1),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4+b1),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1+b1),
hostname (= 3.25),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2+b1),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-8),
libatomic1 (= 14.2.0-8),
libattr1 (= 1:2.5.2-2),
libaudit-common (= 1:4.0.2-2),
libaudit1 (= 1:4.0.2-2),
libbinutils (= 2.43.1-5),
libblkid1 (= 2.40.2-11),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-3+b1),
libcap2 (= 1:2.66-5+b1),
libcc1-0 (= 14.2.0-8),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdebconfclient0 (= 0.273),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.12~1.gbp82cafd),
libelf1t64 (= 0.192-4),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-8),
libgcc-s1 (= 14.2.0-8),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgmp10 (= 2:6.3.0+dfsg-2+b2),
libgomp1 (= 14.2.0-8),
libgprofng0 (= 2.43.1-5),
libhwasan0 (= 14.2.0-8),
libicu72 (= 72.1-5+b1),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-8),
libjansson4 (= 2.14-2+b3),
liblsan0 (= 14.2.0-8),
liblzma5 (= 5.6.3-1+b1),
libmagic-mgc (= 1:5.45-3+b1),
libmagic1t64 (= 1:5.45-3+b1),
libmd0 (= 1.1.0-2+b1),
libmount1 (= 2.40.2-11),
libmpc3 (= 1.3.1-1+b3),
libmpfr6 (= 4.2.1-1+b2),
libpam-modules (= 1.5.3-7+b1),
libpam-modules-bin (= 1.5.3-7+b1),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7+b1),
libpcre2-8-0 (= 10.44-2),
libperl5.40 (= 5.40.0-7),
libpipeline1 (= 1.5.8-1),
libseccomp2 (= 2.5.5-1+b3),
libselinux1 (= 3.7-3+b1),
libsframe1 (= 2.43.1-5),
libsmartcols1 (= 2.40.2-11),
libssl3t64 (= 3.3.2-2),
libstdc++-14-dev (= 14.2.0-8),
libstdc++6 (= 14.2.0-8),
libsymspg-dev (= 2.5.0-1),
libsymspg2 (= 2.5.0-1),
libsystemd0 (= 257~rc1-4),
libtinfo6 (= 6.5-2+b1),
libtool (= 2.4.7-8),
libtsan2 (= 14.2.0-8),
libubsan1 (= 14.2.0-8),
libuchardet0 (= 0.0.8-1+b2),
libudev1 (= 257~rc1-4),
libunistring5 (= 1.2-1+b1),
libuuid1 (= 2.40.2-11),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1),
libzstd1 (= 1.5.6+dfsg-1+b1),
linux-libc-dev (= 6.11.7-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1+b1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2+b1),
openssl-provider-legacy (= 3.3.2-2),
patch (= 2.7.6-7+b1),
perl (= 5.40.0-7),
perl-base (= 5.40.0-7),
perl-modules-5.40 (= 5.40.0-7),
po-debconf (= 1.0.21+nmu1),
rpcsvc-proto (= 1.4.3-1+b1),
sed (= 4.9-2+b1),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.11-1),
tar (= 1.35+dfsg-3+b1),
util-linux (= 2.40.2-11),
xz-utils (= 5.6.3-1+b1),
zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_US.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1706865348"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
c2x-dbgsym_2.41.b+ds-2_arm64.deb
--------------------------------
new Debian package, version 2.0.
size 381716 bytes: control archive=528 bytes.
344 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: c2x-dbgsym
Source: c2x
Version: 2.41.b+ds-2
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 406
Depends: c2x (= 2.41.b+ds-2)
Section: debug
Priority: optional
Description: debug symbols for c2x
Build-Ids: 36a4f330703899c8053b06818a4e37832fa35937
drwxr-xr-x root/root 0 2024-02-02 09:15 ./
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/lib/
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/lib/debug/
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/lib/debug/.build-id/36/
-rw-r--r-- root/root 405248 2024-02-02 09:15 ./usr/lib/debug/.build-id/36/a4f330703899c8053b06818a4e37832fa35937.debug
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/share/
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/share/doc/
lrwxrwxrwx root/root 0 2024-02-02 09:15 ./usr/share/doc/c2x-dbgsym -> c2x
c2x_2.41.b+ds-2_arm64.deb
-------------------------
new Debian package, version 2.0.
size 223052 bytes: control archive=1016 bytes.
866 bytes, 19 lines control
373 bytes, 6 lines md5sums
Package: c2x
Version: 2.41.b+ds-2
Architecture: arm64
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Installed-Size: 609
Depends: libc6 (>= 2.38), libsymspg2 (>= 2.5.0)
Section: science
Priority: optional
Homepage: https://www.c2x.org.uk
Description: converter between DFT electronic structure codes formats
This program should convert CASTEP's .check, .castep_bin, orbitals and .cell
to various other formats, particularly so that they can be visualised with
Jmol, XCrysDen, gnuplot and other programs. It can extract charge and spin
densities, wavefunctions, symmetry operations, and much else besides. It also
interfaces with Abinit, Quantum Espresso, Siesta, VASP, and other electronic
structure codes.
.
The code can also manipulate .cell and .pdb files, building supercells,
performing shifts, adding vacuum and rolling nanotubes.
drwxr-xr-x root/root 0 2024-02-02 09:15 ./
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/bin/
-rwxr-xr-x root/root 594584 2024-02-02 09:15 ./usr/bin/c2x
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/share/
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/share/doc/c2x/
-rw-r--r-- root/root 457 2024-02-02 09:15 ./usr/share/doc/c2x/README.Debian
-rw-r--r-- root/root 592 2024-02-02 09:15 ./usr/share/doc/c2x/changelog.Debian.gz
-rw-r--r-- root/root 7100 2024-01-27 18:45 ./usr/share/doc/c2x/changelog.gz
-rw-r--r-- root/root 536 2024-02-02 09:15 ./usr/share/doc/c2x/copyright
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/share/man/
drwxr-xr-x root/root 0 2024-02-02 09:15 ./usr/share/man/man1/
-rw-r--r-- root/root 8608 2024-02-02 09:15 ./usr/share/man/man1/c2x.1.gz
lintian
-------
Setup apt archive
-----------------
Merged Build-Depends: lintian
Filtered Build-Depends: lintian
dpkg-deb: warning: root directory has unusual owner or group 998:999.
Hint: either pass --root-owner-group, see dpkg-build-api(7) or add an explicit 'Rules-Requires-Root: no' in debian/control.
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1214 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1276 B]
Fetched 3105 B in 0s (271 kB/s)
Reading package lists...
Get:1 file:/<<BUILDDIR>>/resolver-Dwybte/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-Dwybte/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-Dwybte/apt_archive ./ Release [606 B]
Get:2 file:/<<BUILDDIR>>/resolver-Dwybte/apt_archive ./ Release [606 B]
Get:3 file:/<<BUILDDIR>>/resolver-Dwybte/apt_archive ./ Release.gpg
Ign:3 file:/<<BUILDDIR>>/resolver-Dwybte/apt_archive ./ Release.gpg
Reading package lists...
Reading package lists...
Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-lintian-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-lintian-dummy.
(Reading database ... 22565 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-lintian-dummy_0.invalid.0_arm64.deb ...
Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-lintian-dummy (0.invalid.0) ...
Running lintian...
W: c2x changes: distribution-and-changes-mismatch sid unstable
I: Lintian run was successful.
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: binary
Build-Space: 8264
Build-Time: 9
Distribution: sid
Host Architecture: arm64
Install-Time: 16
Job: /tmp/debusine-fetch-exec-upload-h_p7vzdg/c2x_2.41.b+ds-2.dsc
Lintian: warn
Machine Architecture: arm64
Package: c2x
Package-Time: 59
Source-Version: 2.41.b+ds-2
Space: 8264
Status: successful
Version: 2.41.b+ds-2
--------------------------------------------------------------------------------
Finished at 2024-11-15T20:54:17Z
Build needed 00:00:59, 8264k disk space