sbuild (Debian sbuild) 0.86.3~bpo12+1 (03 November 2024) on debusine-worker-arm64-demeter-05.freexian.com
+==============================================================================+
| debian-med 3.8.1 (arm64) Sat, 16 Nov 2024 00:30:01 +0000 |
+==============================================================================+
Package: debian-med
Version: 3.8.1
Source Version: 3.8.1
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: binary
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/957781/system.tar.xz to /tmp/tmp.sbuild.H1dayusol1...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
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| Chroot Setup Commands |
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rm -f /etc/resolv.conf
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I: Finished running 'rm -f /etc/resolv.conf'.
Finished processing commands.
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Copying /tmp/debusine-fetch-exec-upload-vekqccqe/dpkg-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-vekqccqe/dpkg_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-vekqccqe/dselect-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-vekqccqe/dselect_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-vekqccqe/libdpkg-dev_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-vekqccqe/dpkg-dev_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-vekqccqe/libdpkg-perl_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/debian-med-rd9fsT/resolver-ZMN1vv' with '<<RESOLVERDIR>>'
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| Update chroot |
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Get:1 file:/build/debian-med-rd9fsT/resolver-Sq3yJS/apt_archive ./ InRelease
Ign:1 file:/build/debian-med-rd9fsT/resolver-Sq3yJS/apt_archive ./ InRelease
Get:2 file:/build/debian-med-rd9fsT/resolver-Sq3yJS/apt_archive ./ Release [606 B]
Get:3 http://deb.debian.org/debian sid InRelease [202 kB]
Get:2 file:/build/debian-med-rd9fsT/resolver-Sq3yJS/apt_archive ./ Release [606 B]
Get:4 file:/build/debian-med-rd9fsT/resolver-Sq3yJS/apt_archive ./ Release.gpg
Ign:4 file:/build/debian-med-rd9fsT/resolver-Sq3yJS/apt_archive ./ Release.gpg
Get:5 file:/build/debian-med-rd9fsT/resolver-Sq3yJS/apt_archive ./ Packages [9246 B]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9951 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 Components [4908 kB]
Fetched 15.1 MB in 2s (6260 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
apt bsdextrautils bsdutils debianutils dpkg dpkg-dev libapt-pkg6.0t64
libaudit-common libaudit1 libblkid1 libbrotli1 libcap-ng0 libdpkg-perl
libglib2.0-0t64 libmarkdown2 libmount1 libpcre2-8-0 libseccomp2 libselinux1
libsemanage2 libsmartcols1 libuuid1 libxml2 login mount util-linux
26 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 7324 kB/10.8 MB of archives.
After this operation, 604 kB disk space will be freed.
Get:1 http://deb.debian.org/debian sid/main arm64 bsdutils arm64 1:2.40.2-11 [104 kB]
Get:2 file:/build/debian-med-rd9fsT/resolver-Sq3yJS/apt_archive ./ dpkg 1.22.12~1.gbp82cafd [1513 kB]
Get:3 file:/build/debian-med-rd9fsT/resolver-Sq3yJS/apt_archive ./ dpkg-dev 1.22.12~1.gbp82cafd [1337 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 debianutils arm64 5.21 [92.1 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 libapt-pkg6.0t64 arm64 2.9.11 [921 kB]
Get:6 file:/build/debian-med-rd9fsT/resolver-Sq3yJS/apt_archive ./ libdpkg-perl 1.22.12~1.gbp82cafd [647 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 libblkid1 arm64 2.40.2-11 [162 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libmount1 arm64 2.40.2-11 [190 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 libsmartcols1 arm64 2.40.2-11 [135 kB]
Get:11 http://deb.debian.org/debian sid/main arm64 mount arm64 2.40.2-11 [153 kB]
Get:12 http://deb.debian.org/debian sid/main arm64 libuuid1 arm64 2.40.2-11 [35.7 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 util-linux arm64 2.40.2-11 [1170 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libpcre2-8-0 arm64 10.44-4 [243 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 libselinux1 arm64 3.7-3+b1 [72.1 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libseccomp2 arm64 2.5.5-1+b3 [46.8 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 apt arm64 2.9.11 [1287 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libaudit-common all 1:4.0.2-2 [12.7 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libcap-ng0 arm64 0.8.5-3+b1 [17.0 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libaudit1 arm64 1:4.0.2-2 [54.2 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 login arm64 1:4.16.0-2+really2.40.2-11 [80.0 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libglib2.0-0t64 arm64 2.82.2-3 [1411 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libsemanage2 arm64 3.7-2+b1 [84.5 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
debconf: delaying package configuration, since apt-utils is not installed
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| Fetch source files |
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Local sources
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/tmp/debusine-fetch-exec-upload-vekqccqe/debian-med_3.8.1.dsc exists in /tmp/debusine-fetch-exec-upload-vekqccqe; copying to chroot
I: NOTICE: Log filtering will replace 'build/debian-med-rd9fsT/debian-med-3.8.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/debian-med-rd9fsT' with '<<BUILDDIR>>'
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| Install package build dependencies |
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Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, blends-dev (>= 0.7.5~)
Filtered Build-Depends: debhelper-compat (= 13), build-essential, fakeroot, blends-dev (>= 0.7.5~)
dpkg-deb: warning: root directory has unusual owner or group 998:999.
Hint: either pass --root-owner-group, see dpkg-build-api(7) or add an explicit 'Rules-Requires-Root: no' in debian/control.
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
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The following additional packages will be installed:
autoconf automake autopoint autotools-dev blends-dev build-essential cpp
cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper
dh-autoreconf dh-strip-nondeterminism distro-info-data dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libc-dev-bin
libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64 libexpat1
libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev libhwasan0
libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblsan0
libmpc3 libmpfr6 libncursesw6 libnsl2 libpython3-stdlib
libpython3.12-minimal libpython3.12-stdlib libstdc++-14-dev libtirpc-common
libtirpc3t64 libtool libtsan2 libubsan1 linux-libc-dev m4 media-types
po-debconf python-apt-common python3 python3-apt python3-autocommand
python3-blends python3-chardet python3-debian python3-inflect
python3-jaraco.context python3-jaraco.functools python3-minimal
python3-more-itertools python3-pkg-resources python3-typeguard
python3-typing-extensions python3.12 python3.12-minimal rpcsvc-proto
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blends-doc cpp-doc
gcc-14-locales cpp-14-doc dh-make gcc-14-doc gcc-multilib manpages-dev flex
bison gdb gcc-doc gdb-aarch64-linux-gnu libc-devtools glibc-doc
libstdc++-14-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
libmail-box-perl python3-doc python3-tk python3-venv python-apt-doc
python3-psycopg2 python3-setuptools python3.12-venv python3.12-doc
binfmt-support
Recommended packages:
python3-psycopg2 manpages manpages-dev libarchive-cpio-perl
javascript-common libgpm2 libltdl-dev libmail-sendmail-perl lsb-release zstd
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blends-dev build-essential cpp
cpp-14 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper
dh-autoreconf dh-strip-nondeterminism distro-info-data dwz fakeroot g++
g++-14 g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-14
gcc-14-aarch64-linux-gnu gcc-aarch64-linux-gnu libasan8 libc-dev-bin
libc6-dev libcc1-0 libcrypt-dev libdebhelper-perl libelf1t64 libexpat1
libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev libhwasan0
libisl23 libitm1 libjs-jquery libjs-sphinxdoc libjs-underscore liblsan0
libmpc3 libmpfr6 libncursesw6 libnsl2 libpython3-stdlib
libpython3.12-minimal libpython3.12-stdlib libstdc++-14-dev libtirpc-common
libtirpc3t64 libtool libtsan2 libubsan1 linux-libc-dev m4 media-types
po-debconf python-apt-common python3 python3-apt python3-autocommand
python3-blends python3-chardet python3-debian python3-inflect
python3-jaraco.context python3-jaraco.functools python3-minimal
python3-more-itertools python3-pkg-resources python3-typeguard
python3-typing-extensions python3.12 python3.12-minimal rpcsvc-proto
sbuild-build-depends-main-dummy
0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded.
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Get:2 http://deb.debian.org/debian sid/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB]
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Get:10 http://deb.debian.org/debian sid/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB]
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Get:40 http://deb.debian.org/debian sid/main arm64 libc-dev-bin arm64 2.40-3 [50.9 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 linux-libc-dev all 6.11.7-1 [2454 kB]
Get:42 http://deb.debian.org/debian sid/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 rpcsvc-proto arm64 1.4.3-1+b1 [60.5 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 libc6-dev arm64 2.40-3 [1591 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-8 [517 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:49 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:50 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:51 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
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Get:53 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-8 [2267 kB]
Get:54 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8 [10.1 MB]
Get:55 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-8 [20.2 kB]
Get:56 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:57 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:58 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:59 http://deb.debian.org/debian sid/main arm64 python-apt-common all 2.9.0 [66.2 kB]
Get:60 http://deb.debian.org/debian sid/main arm64 distro-info-data all 0.63 [6408 B]
Get:61 http://deb.debian.org/debian sid/main arm64 python3-apt arm64 2.9.0+b3 [178 kB]
Get:62 http://deb.debian.org/debian sid/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get:63 http://deb.debian.org/debian sid/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get:64 http://deb.debian.org/debian sid/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get:65 http://deb.debian.org/debian sid/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get:66 http://deb.debian.org/debian sid/main arm64 python3-inflect all 7.3.1-2 [32.4 kB]
Get:67 http://deb.debian.org/debian sid/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get:68 http://deb.debian.org/debian sid/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get:69 http://deb.debian.org/debian sid/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB]
Get:70 http://deb.debian.org/debian sid/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB]
Get:71 http://deb.debian.org/debian sid/main arm64 python3-debian all 0.1.49 [115 kB]
Get:72 http://deb.debian.org/debian sid/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:73 http://deb.debian.org/debian sid/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:74 http://deb.debian.org/debian sid/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB]
Get:75 http://deb.debian.org/debian sid/main arm64 python3-blends all 0.7.7 [32.4 kB]
Get:76 http://deb.debian.org/debian sid/main arm64 blends-dev all 0.7.7 [22.8 kB]
Get:77 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:78 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.12~1.gbp82cafd g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 linux-libc-dev_6.11.7-1
Package versions: appstream_1.0.3-1+b1 apt_2.9.11 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 blends-dev_0.7.7 bsdextrautils_2.40.2-11 bsdutils_1:2.40.2-11 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-8 cpp-14-aarch64-linux-gnu_14.2.0-8 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-9+b1 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1+b1 diffutils_1:3.10-1+b1 distro-info-data_0.63 dpkg_1.22.12~1.gbp82cafd dpkg-dev_1.22.12~1.gbp82cafd dwz_0.15-1+b1 e2fsprogs_1.47.1-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-8 g++-14-aarch64-linux-gnu_14.2.0-8 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-8 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ucf_3.0043+nmu1 unzip_6.0-28+b1 util-linux_2.40.2-11 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (native)
Source: debian-med
Binary: med-tasks, med-config, med-all, med-bio, med-bio-dev, med-cloud, med-data, med-dental, med-epi, med-his, med-imaging, med-imaging-dev, med-laboratory, med-oncology, med-pharmacy, med-physics, med-practice, med-psychology, med-research, med-statistics, med-tools, med-typesetting
Architecture: all
Version: 3.8.1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/blends-team/med
Vcs-Git: https://salsa.debian.org/blends-team/med.git
Build-Depends: debhelper-compat (= 13)
Build-Depends-Indep: blends-dev (>= 0.7.5~)
Package-List:
med-all deb metapackages optional arch=all
med-bio deb metapackages optional arch=all
med-bio-dev deb metapackages optional arch=all
med-cloud deb metapackages optional arch=all
med-config deb misc optional arch=all
med-data deb metapackages optional arch=all
med-dental deb metapackages optional arch=all
med-epi deb metapackages optional arch=all
med-his deb metapackages optional arch=all
med-imaging deb metapackages optional arch=all
med-imaging-dev deb metapackages optional arch=all
med-laboratory deb metapackages optional arch=all
med-oncology deb metapackages optional arch=all
med-pharmacy deb metapackages optional arch=all
med-physics deb metapackages optional arch=all
med-practice deb metapackages optional arch=all
med-psychology deb metapackages optional arch=all
med-research deb metapackages optional arch=all
med-statistics deb metapackages optional arch=all
med-tasks deb misc optional arch=all
med-tools deb metapackages optional arch=all
med-typesetting deb metapackages optional arch=all
Checksums-Sha1:
9da32b7486a6f3dab3fd19bfdf5b20e39f66a47b 126456 debian-med_3.8.1.tar.xz
Checksums-Sha256:
5e2047554ebd7aa547ade3b9567daa4be823827b5bcd72b9f9c3289b8731b913 126456 debian-med_3.8.1.tar.xz
Files:
6f2bd016b2bf6facbcab25de8338d355 126456 debian-med_3.8.1.tar.xz
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gpgv: Signature made Mon May 22 12:27:05 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./debian-med_3.8.1.dsc: no acceptable signature found
dpkg-source: info: extracting debian-med in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking debian-med_3.8.1.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package debian-med
dpkg-buildpackage: info: source version 3.8.1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# call make clean instead of distclean
make clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf tmp
rm -f tasks/*~
rm -rf tasksel
rm -f packages.txt by_vote packages-sorted.txt
rm -f debian/*-config.postinst debian/*-config.preinst debian/*-config.postrm debian/*-config.prerm
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# hmmm, that would kill debian/control - so don't do this!
# /usr/bin/make -f /usr/share/blends-dev/Makefile clean
# Clear apt-get cache
rm -rf tmp
# Remove backup files from source tarball
rm -f tasks/*~
# Remove auto generated post{inst,rm} scripts; but only if an according *.stub file exists
for task in `ls tasks | grep -v '^[a-z]*:$*' | grep -v '^$'` ; do \
rm -f debian/med-${task}.postinst debian/med-${task}.prerm ; \
done
# rm -f debian/med-*.postinst debian/med-*.prerm debian/med-*.postrm debian/med-*.preinst
# remove auto generated files for config package
rm -f debian/med-config.templates debian/med-config.config \
debian/med-config.install debian/med-config.links \
debian/90med-config
# remove auto generated debconf template translations
rm -rf debian/po
# remove possibly remaining debhelper files
rm -f debian/med-*.debhelper.log
dh_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
# do nothing, we just called the make install target in advance
# and want to build the packages without network access
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/share/blends-dev/blend-install-helper
dh_install debian-med-tasks.desc usr/share/tasksel/descs
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_installdocs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installdocs -A README
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installchangelogs
dh_installman
dh_installdebconf
dh_lintian
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'med-tasks' in '../med-tasks_3.8.1_all.deb'.
dpkg-deb: building package 'med-data' in '../med-data_3.8.1_all.deb'.
dpkg-deb: building package 'med-his' in '../med-his_3.8.1_all.deb'.
dpkg-deb: building package 'med-laboratory' in '../med-laboratory_3.8.1_all.deb'.
dpkg-deb: building package 'med-typesetting' in '../med-typesetting_3.8.1_all.deb'.
dpkg-deb: building package 'med-physics' in '../med-physics_3.8.1_all.deb'.
dpkg-deb: building package 'med-research' in '../med-research_3.8.1_all.deb'.
dpkg-deb: building package 'med-bio' in '../med-bio_3.8.1_all.deb'.
dpkg-deb: building package 'med-imaging' in '../med-imaging_3.8.1_all.deb'.
dpkg-deb: building package 'med-oncology' in '../med-oncology_3.8.1_all.deb'.
dpkg-deb: building package 'med-dental' in '../med-dental_3.8.1_all.deb'.
dpkg-deb: building package 'med-practice' in '../med-practice_3.8.1_all.deb'.
dpkg-deb: building package 'med-statistics' in '../med-statistics_3.8.1_all.deb'.
dpkg-deb: building package 'med-config' in '../med-config_3.8.1_all.deb'.
dpkg-deb: building package 'med-bio-dev' in '../med-bio-dev_3.8.1_all.deb'.
dpkg-deb: building package 'med-epi' in '../med-epi_3.8.1_all.deb'.
dpkg-deb: building package 'med-tools' in '../med-tools_3.8.1_all.deb'.
dpkg-deb: building package 'med-imaging-dev' in '../med-imaging-dev_3.8.1_all.deb'.
dpkg-deb: building package 'med-psychology' in '../med-psychology_3.8.1_all.deb'.
dpkg-deb: building package 'med-all' in '../med-all_3.8.1_all.deb'.
dpkg-deb: building package 'med-pharmacy' in '../med-pharmacy_3.8.1_all.deb'.
dpkg-deb: building package 'med-cloud' in '../med-cloud_3.8.1_all.deb'.
dpkg-genbuildinfo --build=binary -O../debian-med_3.8.1_arm64.buildinfo
dpkg-genchanges --build=binary -O../debian-med_3.8.1_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-11-16T00:31:12Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
debian-med_3.8.1_arm64.changes:
-------------------------------
Format: 1.8
Date: Mon, 22 May 2023 14:04:33 +0200
Source: debian-med
Binary: med-all med-bio med-bio-dev med-cloud med-config med-data med-dental med-epi med-his med-imaging med-imaging-dev med-laboratory med-oncology med-pharmacy med-physics med-practice med-psychology med-research med-statistics med-tasks med-tools med-typesetting
Architecture: all
Version: 3.8.1
Distribution: sid
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
med-all - Default selection of tasks for Debian Med
med-bio - Debian Med bioinformatics packages
med-bio-dev - Debian Med packages for development of bioinformatics application
med-cloud - Debian Med bioinformatics applications usable in cloud computing
med-config - Debian Med general config package
med-data - Debian Med drug databases
med-dental - Debian Med packages related to dental practice
med-epi - Debian Med epidemiology related packages
med-his - Debian Med suggestions for Hospital Information Systems
med-imaging - Debian Med image processing and visualization packages
med-imaging-dev - Debian Med image processing and visualization packages developmen
med-laboratory - Debian Med suggestions for medical laboratories
med-oncology - Debian Med packages for oncology
med-pharmacy - Debian Med packages for pharmaceutical research
med-physics - Debian Med packages for medical physicists
med-practice - Debian Med packages for practice management
med-psychology - Debian Med packages for psychology
med-research - Debian Med packages for medical research
med-statistics - Debian Med statistics
med-tasks - Debian Med tasks for tasksel
med-tools - Debian Med several tools
med-typesetting - Debian Med support for typesetting and publishing
Changes:
debian-med (3.8.1) unstable; urgency=medium
.
* Standards-Version: 4.6.2
* Update dependencies to fit Bookworm release status
.
* start of automatic changelog entry *
.
* Changes in metapackage dependencies
-med-bio-dev
added:
Recommends: libwfa2-dev
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Files:
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0c97df2f823eba316bece188c3840395 8592 metapackages optional med-research_3.8.1_all.deb
6af8caa86600aacbf23d9182e05b9fc2 8692 metapackages optional med-statistics_3.8.1_all.deb
355e11da71e3859056a769f4531fdf48 8340 misc optional med-tasks_3.8.1_all.deb
ee2435d3b2c272bf3cc7ae01715d6c94 8748 metapackages optional med-tools_3.8.1_all.deb
363b34589a100a8b052ef1f3f8132f3d 8672 metapackages optional med-typesetting_3.8.1_all.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: debian-med
Binary: med-all med-bio med-bio-dev med-cloud med-config med-data med-dental med-epi med-his med-imaging med-imaging-dev med-laboratory med-oncology med-pharmacy med-physics med-practice med-psychology med-research med-statistics med-tasks med-tools med-typesetting
Architecture: all
Version: 3.8.1
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Sat, 16 Nov 2024 00:31:12 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.5),
bash (= 5.2.32-1+b2),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
blends-dev (= 0.7.7),
bsdextrautils (= 2.40.2-11),
bsdutils (= 1:2.40.2-11),
build-essential (= 12.12),
bzip2 (= 1.0.8-6),
coreutils (= 9.5-1+b1),
cpp (= 4:14.2.0-1),
cpp-14 (= 14.2.0-8),
cpp-14-aarch64-linux-gnu (= 14.2.0-8),
cpp-aarch64-linux-gnu (= 4:14.2.0-1),
dash (= 0.5.12-9+b1),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.21),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1+b1),
distro-info-data (= 0.63),
dpkg (= 1.22.12~1.gbp82cafd),
dpkg-dev (= 1.22.12~1.gbp82cafd),
dwz (= 0.15-1+b1),
file (= 1:5.45-3+b1),
findutils (= 4.10.0-3),
g++ (= 4:14.2.0-1),
g++-14 (= 14.2.0-8),
g++-14-aarch64-linux-gnu (= 14.2.0-8),
g++-aarch64-linux-gnu (= 4:14.2.0-1),
gcc (= 4:14.2.0-1),
gcc-14 (= 14.2.0-8),
gcc-14-aarch64-linux-gnu (= 14.2.0-8),
gcc-14-base (= 14.2.0-8),
gcc-aarch64-linux-gnu (= 4:14.2.0-1),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4+b1),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1+b1),
hostname (= 3.25),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2+b1),
libapt-pkg6.0t64 (= 2.9.11),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-8),
libatomic1 (= 14.2.0-8),
libattr1 (= 1:2.5.2-2),
libaudit-common (= 1:4.0.2-2),
libaudit1 (= 1:4.0.2-2),
libbinutils (= 2.43.1-5),
libblkid1 (= 2.40.2-11),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-3+b1),
libcap2 (= 1:2.66-5+b1),
libcc1-0 (= 14.2.0-8),
libcom-err2 (= 1.47.1-1+b1),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdebconfclient0 (= 0.273),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.12~1.gbp82cafd),
libelf1t64 (= 0.192-4),
libexpat1 (= 2.6.4-1),
libffi8 (= 3.4.6-1),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-8),
libgcc-s1 (= 14.2.0-8),
libgcrypt20 (= 1.11.0-6),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgmp10 (= 2:6.3.0+dfsg-2+b2),
libgomp1 (= 14.2.0-8),
libgpg-error0 (= 1.50-4),
libgprofng0 (= 2.43.1-5),
libgssapi-krb5-2 (= 1.21.3-3),
libhwasan0 (= 14.2.0-8),
libicu72 (= 72.1-5+b1),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-8),
libjansson4 (= 2.14-2+b3),
libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
libjs-sphinxdoc (= 7.4.7-4),
libjs-underscore (= 1.13.4~dfsg+~1.11.4-3),
libk5crypto3 (= 1.21.3-3),
libkeyutils1 (= 1.6.3-4),
libkrb5-3 (= 1.21.3-3),
libkrb5support0 (= 1.21.3-3),
liblsan0 (= 14.2.0-8),
liblz4-1 (= 1.9.4-3+b1),
liblzma5 (= 5.6.3-1+b1),
libmagic-mgc (= 1:5.45-3+b1),
libmagic1t64 (= 1:5.45-3+b1),
libmd0 (= 1.1.0-2+b1),
libmount1 (= 2.40.2-11),
libmpc3 (= 1.3.1-1+b3),
libmpfr6 (= 4.2.1-1+b2),
libncursesw6 (= 6.5-2+b1),
libnsl2 (= 1.3.0-3+b3),
libpam-modules (= 1.5.3-7+b1),
libpam-modules-bin (= 1.5.3-7+b1),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7+b1),
libpcre2-8-0 (= 10.44-4),
libperl5.40 (= 5.40.0-7),
libpipeline1 (= 1.5.8-1),
libpython3-stdlib (= 3.12.7-1),
libpython3.12-minimal (= 3.12.7-3),
libpython3.12-stdlib (= 3.12.7-3),
libreadline8t64 (= 8.2-5),
libseccomp2 (= 2.5.5-1+b3),
libselinux1 (= 3.7-3+b1),
libsframe1 (= 2.43.1-5),
libsmartcols1 (= 2.40.2-11),
libsqlite3-0 (= 3.46.1-1),
libssl3t64 (= 3.3.2-2),
libstdc++-14-dev (= 14.2.0-8),
libstdc++6 (= 14.2.0-8),
libsystemd0 (= 257~rc1-4),
libtinfo6 (= 6.5-2+b1),
libtirpc-common (= 1.3.4+ds-1.3),
libtirpc3t64 (= 1.3.4+ds-1.3+b1),
libtool (= 2.4.7-8),
libtsan2 (= 14.2.0-8),
libubsan1 (= 14.2.0-8),
libuchardet0 (= 0.0.8-1+b2),
libudev1 (= 257~rc1-4),
libunistring5 (= 1.2-1+b1),
libuuid1 (= 2.40.2-11),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1),
libxxhash0 (= 0.8.2-2+b2),
libzstd1 (= 1.5.6+dfsg-1+b1),
linux-libc-dev (= 6.11.7-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1+b1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
media-types (= 10.1.0),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2+b1),
netbase (= 6.4),
openssl-provider-legacy (= 3.3.2-2),
patch (= 2.7.6-7+b1),
perl (= 5.40.0-7),
perl-base (= 5.40.0-7),
perl-modules-5.40 (= 5.40.0-7),
po-debconf (= 1.0.21+nmu1),
python-apt-common (= 2.9.0),
python3 (= 3.12.7-1),
python3-apt (= 2.9.0+b3),
python3-autocommand (= 2.2.2-3),
python3-blends (= 0.7.7),
python3-chardet (= 5.2.0+dfsg-1),
python3-debian (= 0.1.49),
python3-inflect (= 7.3.1-2),
python3-jaraco.context (= 6.0.0-1),
python3-jaraco.functools (= 4.1.0-1),
python3-minimal (= 3.12.7-1),
python3-more-itertools (= 10.5.0-1),
python3-pkg-resources (= 75.2.0-1),
python3-typeguard (= 4.4.1-1),
python3-typing-extensions (= 4.12.2-2),
python3.12 (= 3.12.7-3),
python3.12-minimal (= 3.12.7-3),
readline-common (= 8.2-5),
rpcsvc-proto (= 1.4.3-1+b1),
sed (= 4.9-2+b1),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.11-1),
tar (= 1.35+dfsg-3+b1),
tzdata (= 2024b-3),
util-linux (= 2.40.2-11),
xz-utils (= 5.6.3-1+b1),
zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
DEB_BUILD_OPTIONS="parallel=8"
LANG="en_US.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1684757073"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
med-all_3.8.1_all.deb
---------------------
new Debian package, version 2.0.
size 6724 bytes: control archive=716 bytes.
654 bytes, 13 lines control
198 bytes, 3 lines md5sums
Package: med-all
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 13
Recommends: med-bio, med-bio-dev, med-statistics
Suggests: med-cloud, med-data, med-dental, med-epi, med-his, med-imaging, med-imaging-dev, med-laboratory, med-oncology, med-pharmacy, med-physics, med-practice, med-psychology, med-research, med-tools, med-typesetting
Section: metapackages
Priority: optional
Description: Default selection of tasks for Debian Med
This package is part of the Debian Med Pure Blend and installs all
tasks for a default installation of this blend.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-all/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-all/README
-rw-r--r-- root/root 4899 2023-05-22 12:04 ./usr/share/doc/med-all/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-all/copyright
med-bio-dev_3.8.1_all.deb
-------------------------
new Debian package, version 2.0.
size 11184 bytes: control archive=4440 bytes.
8077 bytes, 14 lines control
426 bytes, 6 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-bio-dev
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 32
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: bio-tradis, biobambam2, bioperl, bioperl-run, biosquid, cwltool, gffread, goby-java, libace-perl, libai-fann-perl, libbambamc-dev, libbamtools-dev, libbigwig-dev, libbio-alignio-stockholm-perl, libbio-asn1-entrezgene-perl, libbio-chado-schema-perl, libbio-cluster-perl, libbio-coordinate-perl, libbio-das-lite-perl, libbio-db-biofetch-perl, libbio-db-embl-perl, libbio-db-hts-perl, libbio-db-ncbihelper-perl, libbio-db-seqfeature-perl, libbio-eutilities-perl, libbio-featureio-perl, libbio-graphics-perl, libbio-mage-perl, libbio-mage-utils-perl, libbio-primerdesigner-perl, libbio-samtools-perl, libbio-scf-perl, libbio-tools-phylo-paml-perl, libbio-tools-run-alignment-clustalw-perl, libbio-tools-run-alignment-tcoffee-perl, libbio-tools-run-remoteblast-perl, libbio-variation-perl, libbiococoa-dev, libbiojava-java, libbiojava4-java, libbiojava6-java, libbioparser-dev, libblasr-dev, libbpp-core-dev, libbpp-phyl-dev, libbpp-phyl-omics-dev, libbpp-popgen-dev, libbpp-qt-dev, libbpp-raa-dev, libbpp-seq-dev, libbpp-seq-omics-dev, libcdk-java, libchado-perl, libcifpp-dev, libconsensuscore-dev, libdivsufsort-dev, libedlib-dev, libfast5-dev, libfastahack-dev, libffindex0-dev, libfml-dev, libgatbcore-dev, libgclib-dev, libgenome-dev, libgenome-model-tools-music-perl, libgenome-perl, libgenometools0-dev, libgff-dev, libgkarrays-dev, libgo-perl, libhdf5-dev, libhmsbeagle-dev, libhts-dev, libhtscodecs-dev, libhtsjdk-java, libjebl2-java, libjloda-java, libkmer-dev, libmems-dev, libminimap2-dev, libmuscle-dev, libncbi-vdb-dev, libncbi6-dev, libncl-dev, libngs-java, libnhgri-blastall-perl, libopenmm-dev, libopenms-dev, libpal-java, libparasail-dev, libpbbam-dev, libpbdata-dev, libpbihdf-dev, libpbseq-dev, libpdb-redo-dev, libpll-dev, libpwiz-dev, libqes-dev, librcsb-core-wrapper0-dev, librdp-taxonomy-tree-java, librg-blast-parser-perl, librg-reprof-bundle-perl, librostlab-blast0-dev, librostlab3-dev, libsbml5-dev, libseqan2-dev, libseqan3-dev, libseqlib-dev, libslow5-dev, libsmithwaterman-dev, libsnp-sites1-dev, libsort-key-top-perl, libspoa-dev, libsrf-dev, libssm-dev, libssu-dev, libssw-dev, libssw-java, libstaden-read-dev, libstatgen-dev, libswiss-perl, libtabixpp-dev, libthread-pool-dev, libvcflib-dev, libvibrant6-dev, libwfa2-dev, libzerg-perl, libzerg0-dev, mcl, nim-hts-dev, nim-kexpr-dev, nim-lapper-dev, ont-fast5-api, pyfai, python3-airr, python3-anndata, python3-bcbio-gff, python3-bioframe, python3-biom-format, python3-biomaj3, python3-biopython, python3-biotools, python3-bx, python3-cgecore, python3-cigar, python3-cobra, python3-cogent3, python3-cooler, python3-corepywrap, python3-csb, python3-cutadapt, python3-cyvcf2, python3-deeptools, python3-deeptoolsintervals, python3-dendropy, python3-dnaio, python3-ete3, python3-fast5, python3-freecontact, python3-gfapy, python3-gffutils, python3-gtfparse, python3-htseq, python3-intervaltree-bio, python3-kineticstools, python3-loompy, python3-mirtop, python3-nanoget, python3-ngs, python3-pairix, python3-pangolearn, python3-parasail, python3-pbcommand, python3-pbconsensuscore, python3-pbcore, python3-peptidebuilder, python3-presto, python3-propka, python3-py2bit, python3-pyabpoa, python3-pyani, python3-pybedtools, python3-pybel, python3-pybigwig, python3-pyfaidx, python3-pyfastx, python3-pymummer, python3-pyranges, python3-pysam, python3-pyspoa, python3-pyvcf, python3-rdkit, python3-ruffus, python3-screed, python3-shasta, python3-skbio, python3-slow5, python3-sqt, python3-streamz, python3-tinyalign, python3-torch, python3-treetime, python3-unifrac, python3-wdlparse, r-bioc-biobase, r-cran-boolnet, r-cran-corrplot, r-cran-distory, r-cran-fitdistrplus, r-cran-forecast, r-cran-genetics, r-cran-gprofiler2, r-cran-haplo.stats, r-cran-metamix, r-cran-phangorn, r-cran-pheatmap, r-cran-phylobase, r-cran-pscbs, r-cran-qqman, r-cran-rentrez, r-cran-rncl, r-cran-rnexml, r-cran-rotl, r-cran-samr, r-cran-sctransform, r-cran-seqinr, r-cran-seurat, r-cran-tsne, r-cran-vegan, r-cran-webgestaltr, ruby-bio, ruby-crb-blast, sbmltoolbox, snakemake, toil
Suggests: bioclipse, capsule-nextflow, conda-package-handling, ctdconverter, cthreadpool-dev, cwlformat, libargs-dev, libatomicqueue-dev, libbam-dev, libbbhash-dev, libbiosoup-dev, libbtllib-dev, libcapsule-maven-nextflow-java, libconcurrentqueue-dev, libdisorder-dev, libfast-perl, libforester-java, libfreecontact-dev, libfreecontact-doc, libfreecontact-perl, libgatk-bwamem-java, libgatk-bwamem-jni, libgatk-fermilite-java, libgatk-fermilite-jni, libgatk-native-bindings-java, libgenomicsdb-dev, libgenomicsdb-java, libicb-utils-java, libmaus2-dev, libmilib-java, libminimap-dev, libmmblib-dev, libmodhmm-dev, libnexml-java, libngs-sdk-dev, libpbcopper-dev, libqcpp-dev, librelion-dev, libroadrunner-dev, librostlab-blast-doc, librostlab-doc, libsavvy-dev, libsuma-dev, libsvmloc-dev, libswarm2-dev, libterraces-dev, libtfbs-perl, libvbz-hdf-plugin-dev, libxxsds-dynamic-dev, octace-bioinfo, python-biopython-doc, python3-alignlib, python3-bcbio, python3-bel-resources, python3-bioblend, python3-biopython-sql, python3-cgelib, python3-compclust, python3-conda-package-streaming, python3-consensuscore2, python3-ctdopts, python3-galaxy-lib, python3-intake, python3-joypy, python3-misopy, python3-ncls, python3-networkx, python3-pycosat, python3-pyflow, python3-roadrunner, python3-scanpy, python3-seqcluster, q2-alignment, q2-composition, q2-cutadapt, q2-dada2, q2-deblur, q2-demux, q2-diversity, q2-emperor, q2-feature-classifier, q2-feature-table, q2-fragment-insertion, q2-gneiss, q2-longitudinal, q2-metadata, q2-phylogeny, q2-quality-control, q2-quality-filter, q2-sample-classifier, q2-shogun, q2-taxa, q2-types, q2-vsearch, q2cli, q2cwl, q2lint, q2templates, qiime, r-bioc-affxparser, r-bioc-affy, r-bioc-affyio, r-bioc-altcdfenvs, r-bioc-annotate, r-bioc-annotationdbi, r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-arrayexpress, r-bioc-biocgenerics, r-bioc-biocneighbors, r-bioc-biomart, r-bioc-biomformat, r-bioc-biostrings, r-bioc-biovizbase, r-bioc-bitseq, r-bioc-bridgedbr, r-bioc-bsgenome, r-bioc-cager, r-bioc-cner, r-bioc-complexheatmap, r-bioc-ctc, r-bioc-cummerbund, r-bioc-dada2, r-bioc-deseq, r-bioc-deseq2, r-bioc-dnacopy, r-bioc-ebseq, r-bioc-enrichedheatmap, r-bioc-ensembldb, r-bioc-genefilter, r-bioc-geneplotter, r-bioc-genomeinfodb, r-bioc-genomicalignments, r-bioc-genomicfeatures, r-bioc-genomicranges, r-bioc-geoquery, r-bioc-go.db, r-bioc-graph, r-bioc-gseabase, r-bioc-gsva, r-bioc-gviz, r-bioc-hypergraph, r-bioc-impute, r-bioc-iranges, r-bioc-limma, r-bioc-makecdfenv, r-bioc-mergeomics, r-bioc-metagenomeseq, r-bioc-mofa, r-bioc-multiassayexperiment, r-bioc-nanostringqcpro, r-bioc-oligo, r-bioc-oligoclasses, r-bioc-org.hs.eg.db, r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-preprocesscore, r-bioc-purecn, r-bioc-qusage, r-bioc-rbgl, r-bioc-rentrez, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-s4vectors, r-bioc-savr, r-bioc-shortread, r-bioc-snpstats, r-bioc-structuralvariantannotation, r-bioc-tfbstools, r-bioc-titancna, r-bioc-tximport, r-bioc-variantannotation, r-bioc-xvector, r-cran-adegenet, r-cran-adephylo, r-cran-amap, r-cran-biwt, r-cran-drinsight, r-cran-dt, r-cran-dynamictreecut, r-cran-fastcluster, r-cran-future.apply, r-cran-future.batchtools, r-cran-ica, r-cran-itertools, r-cran-kaos, r-cran-metap, r-cran-minerva, r-cran-natserv, r-cran-nmf, r-cran-optimalcutpoints, r-cran-parmigene, r-cran-pcapp, r-cran-proc, r-cran-rann, r-cran-rcpphnsw, r-cran-robustrankaggreg, r-cran-rocr, r-cran-rook, r-cran-rsvd, r-cran-shazam, r-cran-sitmo, r-cran-venndiagram, r-other-apmswapp, ruby-rgfa, vdjtools
Section: metapackages
Priority: optional
Description: Debian Med packages for development of bioinformatics applications
This metapackage will install Debian packages which might be helpful
for development of applications for biological research.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-bio-dev -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/menu/
-rw-r--r-- root/root 371 2023-05-22 12:04 ./usr/share/blends/med/menu/libncbi6-dev
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 20 2023-05-22 12:04 ./usr/share/blends/tasks/med/bio-dev
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/README.Debian
-rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-bio-dev/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-bio-dev.1.gz -> med-config.1.gz
med-bio_3.8.1_all.deb
---------------------
new Debian package, version 2.0.
size 13992 bytes: control archive=6604 bytes.
11319 bytes, 14 lines control
620 bytes, 9 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-bio
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 43
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: abacas, abpoa, abyss, acedb-other, adapterremoval, adun-core, aegean, aevol, alien-hunter, alter-sequence-alignment, altree, amap-align, ampliconnoise, andi, any2fasta, aragorn, arden, ariba, art-nextgen-simulation-tools, artemis, artfastqgenerator, assembly-stats, assemblytics, atac, ataqv, atropos, augur, augustus, autodock, autodock-vina, autogrid, avogadro, axe-demultiplexer, baitfisher, bali-phy, ballview, bamclipper, bamkit, bamtools, bandage, barrnap, bbmap, bcalm, bcftools, beads, beagle, beast-mcmc, beast2-mcmc, bedops, bedtools, belvu, berkeley-express, bio-eagle, bio-rainbow, bio-tradis, bio-vcf, bioawk, biobambam2, biosyntax, bitseq, blasr, blixem, bolt-lmm, bowtie, bowtie2, boxshade, bppphyview, bppsuite, brig, btllib-tools, busco, bustools, bwa, canu, cassiopee, cat-bat, cct, cd-hit, cdbfasta, centrifuge, cgview, changeo, chimeraslayer, chromhmm, chromimpute, cif-tools, circlator, circos, clearcut, clonalframe, clonalframeml, clonalorigin, clustalo, clustalw, clustalx, cnvkit, codonw, comet-ms, concavity, conservation-code, covtobed, crac, csb, cutadapt, cutesv, daligner, damapper, datamash, dawg, dazzdb, delly, density-fitness, dextractor, dialign, dialign-tx, diamond-aligner, discosnp, disulfinder, dnaclust, dnarrange, dotter, drop-seq-tools, dssp, dwgsim, e-mem, ea-utils, ecopcr, edtsurf, eigensoft, elph, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, emmax, estscan, examl, exonerate, fasta3, fastahack, fastani, fastaq, fastdnaml, fastlink, fastml, fastp, fastq-pair, fastqc, fastqtl, fasttree, ffindex, figtree, filtlong, fitgcp, flash, flexbar, flye, fml-asm, freebayes, freecontact, fsa, fsm-lite, gamgi, garli, garlic, gasic, gatb-core, gbrowse, gdpc, gemma, genometester, genomethreader, genometools, genomicsdb-tools, gentle, gff2aplot, gff2ps, gffread, ggd-utils, ghemical, ghmm, glam2, gmap, grabix, graphlan, grinder, gromacs, gsort, gubbins, gwama, harvest-tools, hhsuite, hilive, hinge, hisat2, hmmer, hmmer2, hyphy-mpi | hyphy-pt, idba, igblast, igor, igv, indelible, infernal, insilicoseq, ipig, iqtree, iva, jaligner, jalview, jellyfish, jellyfish1, jmodeltest, jmol, kalign, kallisto, kaptive, khmer, kineticstools, king-probe, kissplice, kleborate, kma, kmc, kmer, kmerresistance, kraken, kraken2, lagan, lamarc, lamassemble, lambda-align, lambda-align2, last-align, lastz, leaff, lefse, libpwiz-tools, librg-utils-perl, libvcflib-tools, lighter, logol, loki, ltrsift, lucy, lumpy-sv, macs, macsyfinder, maffilter, mafft, malt, mapdamage, mapsembler2, maq, maqview, mash, massxpert, mauve-aligner, mcaller, mecat2, megadepth, megahit, megan-ce, melting, meryl, metabat, metaphlan, metastudent, mhap, microbegps, microbiomeutil, mindthegap, minexpert2, minia, miniasm, minimac4, minimap, minimap2, mipe, mira-assembler, mirtop, mlv-smile, mmb, mmseqs2, mosdepth, mothur, mptp, mrbayes, multiqc, mummer, murasaki | murasaki-mpi, muscle, muscle3, mustang, nanofilt, nanolyse, nanook, nanopolish, nanostat, nanosv, nast-ier, ncbi-acc-download, ncbi-blast+, ncbi-blast+-legacy, ncbi-entrez-direct, ncbi-epcr, ncbi-seg, ncbi-tools-bin, ncbi-tools-x11, ncl-tools, ncoils, neobio, ngmlr, njplot, norsnet, norsp, ntcard, nxtrim, obitools, openms, optimir, pal2nal, paleomix, paml, paraclu, parasail, parsinsert, parsnp, patman, pbdagcon, pbhoney, pbjelly, pbsim, pbsuite, pdb2pqr, perlprimer, perm, pftools, phast, phipack, phybin, phylip, phylonium, phyml, physamp, phyutility, phyx, picard-tools, picopore, pigx-rnaseq, piler, pilercr, pilon, pinfish, pique, pirs, pizzly, placnet, plasmidid, plasmidomics, plasmidseeker, plast, plink, plink1.9, plink2, plip, poa, populations, porechop, poretools, prank, predictnls, presto, prime-phylo, primer3, prinseq-lite, proalign, probabel, probalign, probcons, proda, prodigal, profbval, profisis, profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md, profnet-norsnet, profnet-prof, profnet-snapfun, profphd-net, profphd-utils, proftmb, progressivemauve, prokka, proteinortho, prottest, provean, pscan-chip, pscan-tfbs, psortb, pullseq, pycoqc, pycorrfit, pyensembl, pyfastx, pymol, pyscanfcs, python3-biomaj3-daemon, python3-cogent3, python3-emperor, python3-geneimpacts, python3-gffutils, python3-pairtools, python3-pybedtools, python3-sqt, python3-treetime, pyvcf, qcat, qcumber, qiime, qtltools, quicktree, quorum, qutemol, r-bioc-annotate, r-bioc-biostrings, r-bioc-cner, r-bioc-cummerbund, r-bioc-deseq2, r-bioc-ebseq, r-bioc-edger, r-bioc-genefilter, r-bioc-geoquery, r-bioc-hilbertvis, r-bioc-htsfilter, r-bioc-impute, r-bioc-limma, r-bioc-megadepth, r-bioc-mergeomics, r-bioc-metagenomeseq, r-bioc-mofa, r-bioc-multiassayexperiment, r-bioc-mutationalpatterns, r-bioc-pcamethods, r-bioc-phyloseq, r-bioc-rtracklayer, r-bioc-scater, r-bioc-tfbstools, r-cran-adegenet, r-cran-adephylo, r-cran-alakazam, r-cran-ape, r-cran-bio3d, r-cran-distory, r-cran-genabel, r-cran-kaos, r-cran-metamix, r-cran-phangorn, r-cran-phytools, r-cran-pscbs, r-cran-qtl, r-cran-rotl, r-cran-samr, r-cran-sdmtools, r-cran-seqinr, r-cran-seurat, r-cran-shazam, r-cran-spp, r-cran-tcr, r-cran-tigger, r-cran-treescape, r-cran-tsne, r-cran-vegan, r-cran-webgestaltr, r-cran-wgcna, r-other-ascat, r-other-mott-happy.hbrem, r-other-rajewsky-dropbead, racon, radiant, ragout, rambo-k, rampler, rapmap, rasmol, raster3d, rate4site, raxml, ray, rdp-alignment, rdp-classifier, rdp-readseq, readseq, readucks, reapr, recan, relion, relion-gui, repeatmasker-recon, reprof, resfinder, rna-star, rnahybrid, roary, rockhopper, roguenarok, rsem, rtax, runcircos-gui, saint, salmid, salmon, sambamba, samblaster, samclip, samtools, savvy-util, scoary, scrappie, scrm, scythe, seaview, seer, segemehl, seqan-apps, seqan-needle, seqan-raptor, seqkit, seqmagick, seqprep, seqsero, seqtk, sga, shasta, shovill, sibelia, sibsim4, sickle, sigma-align, sim4, sim4db, simka, simkamin, ska, skesa, skewer, smalt, smithwaterman, smrtanalysis, snap, snap-aligner, sniffles, snp-sites, snpeff, snpomatic, snpsift, soapaligner, soapdenovo, soapdenovo2, soapsnp, sortmerna, spaced, spades, spaln, spoa, sprai, spread-phy, squizz, sra-toolkit, srst2, ssake, sspace, ssw-align, stacks, staden, staden-io-lib-utils, stringtie, subread, suitename, sumaclust, sumatra, sumtrees, surankco, surpyvor, survivor, svim, swarm, sweed, t-coffee, tabix, tantan, terraphast, theseus, thesias, tiddit, tigr-glimmer, tm-align, tnseq-transit, toil, tombo, tophat-recondition, topp, toppred, tortoize, trace2dbest, tracetuner, transdecoder, transrate-tools, transtermhp, tree-puzzle | tree-ppuzzle, treeview, treeviewx, trf, trim-galore, trimmomatic, tvc, twopaco, uc-echo, umap-learn, umis, uncalled, unicycler, unikmer, varna, vcfanno, vcftools, velvet | velvet-long, velvetoptimiser, virulencefinder, vmatch, vsearch, vt, wham-align, wigeon, wise, xpore, yaha, yanagiba, yanosim
Suggests: acacia, adun.app, agat, amos-assembler, amoscmp, anfo, annovar, apollo, arachne, arb, arvados, asap, axparafit, axpcoords, bagpipe, bambus, bax2bam, bcbio, biceps, big-blast, bigsdb, bismark, blat, blimps-utils, blobology, braker, btk-core, cactus, caftools, card-rgi, catfishq, cdna-db, cellprofiler, cinema, cluster3, cmap, conda-package-handling, condetri, contrafold, contralign, coot, copycat, covpipe, crossbow, crux-toolkit, cufflinks, cytoscape, dascrubber, dazzle, deepbinner, deepnano, dendroscope, diann, dnapi, e-hive, ecell, embassy-phylip, emboss-explorer, ensembl, ensembl-vep, epigrass, estferret, euler-sr, euler2, exabayes, exalt, excavator, ffp, fieldbioinformatics, figaro, flappie, forester, forge, galaxy, gatk, gbrowse-syn, genemark, genesplicer, genetrack, genezilla, genographer, gerp++, getdata, glimmerhmm, gmv, gramalign, graphbin, graphmap2, haploview, hawkeye, htqc, hts-nim-tools, idefix, idseq-bench, igdiscover, illustrate, inspect, jbrowse, jigsaw, kempbasu, libhdf5-dev, libhnswlib-dev, lofreq, mach-haplotyper, mage2tab, maker2, manta, marginphase, martj, maude, maxd, medaka, meme, mesquite, metabit, metaeuk, metarep, metastudent-data, metastudent-data-2, migrate, minimus, mirbase, modeller, molekel, mosaik-aligner, mpsqed, mrs, msatfinder, mugsy, mummergpu, mview, nano-snakemake, nanocall, nanocomp, nanoplot, ncbi-magicblast, nextsv, ngila, ngsqctoolkit, nw-align, oases, obo-edit, oligoarrayaux, omegamap, oncofuse, operondb, optitype, paipline, pangolin, partigene, partitionfinder, patristic, pcma, pfaat, phagefinder, phpphylotree, phylographer, phylophlan, phyloviz-core, phylowin, pigx-scrnaseq, pipasic, plato, pomoxis, pplacer, profit, profphd, prot4est, psipred, pssh2, pufferfish, purple, pyrophosphate-tools, python3-alignlib, python3-anndata, python3-cgecore, python3-cyvcf2, python3-deeptools, python3-deeptoolsintervals, python3-htseq, python3-intake, python3-loompy, python3-nanoget, python3-nanomath, python3-ncls, python3-orange, python3-py2bit, python3-pybel, python3-pychopper, python3-pyfaidx, python3-pyflow, python3-pyranges, python3-pyrle, python3-pysam, python3-tinyalign, q2-alignment, q2-composition, q2-cutadapt, q2-dada2, q2-deblur, q2-demux, q2-diversity, q2-emperor, q2-feature-classifier, q2-feature-table, q2-fragment-insertion, q2-gneiss, q2-longitudinal, q2-metadata, q2-phylogeny, q2-quality-control, q2-quality-filter, q2-sample-classifier, q2-taxa, q2-types, q2-vsearch, q2cli, q2templates, qtlcart, qtlreaper, qualimap, quast, r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-beachmat, r-bioc-biocneighbors, r-bioc-biocsingular, r-bioc-bitseq, r-bioc-ctc, r-bioc-dnacopy, r-bioc-ensembldb, r-bioc-experimenthub, r-bioc-geneplotter, r-bioc-genomicalignments, r-bioc-genomicfiles, r-bioc-genomicranges, r-bioc-go.db, r-bioc-grohmm, r-bioc-gviz, r-bioc-isoformswitchanalyzer, r-bioc-mofa2, r-bioc-org.hs.eg.db, r-bioc-org.mm.eg.db, r-bioc-qusage, r-bioc-savr, r-bioc-singlecellexperiment, r-bioc-structuralvariantannotation, r-bioc-tximport, r-cran-amap, r-cran-biwt, r-cran-boolnet, r-cran-corrplot, r-cran-drinsight, r-cran-dynamictreecut, r-cran-epir, r-cran-fitdistrplus, r-cran-forecast, r-cran-gprofiler2, r-cran-minerva, r-cran-optimalcutpoints, r-cran-parmigene, r-cran-pheatmap, r-cran-qqman, r-cran-rcpphnsw, r-cran-rentrez, r-cran-sctransform, r-other-apmswapp, r-other-fastbaps, raccoon, raxml-ng, rbs-finder, relion-cuda, relion-gui-cuda, repeatmasker, resfinder-db, roadtrips, roche454ace2caf, rosa, rose, rsat, sailfish, sap, science-workflow, sepp, seq-gen, seq-seq-pan, seqcluster, seqwish, sift, signalalign, sina, sistr, situs, snippy, solvate, sourmash, sparta, splitstree, ssaha, strap, strap-base, strelka, tab2mage, tacg, tandem-genotypes, taverna, taxinspector, tetra, tide, tigr-glimmer-mg, tipp, tn-seqexplorer, tophat, treebuilder3d, trinityrnaseq, tripal, trnascan-se, twain, ufasta, ugene, umap, unc-fish, uniprime, varmatch, varscan, vdjtools, vg, vienna-rna, viewmol, vmd, x-tandem-pipeline, zodiac-zeden
Section: metapackages
Priority: optional
Description: Debian Med bioinformatics packages
This metapackage will install Debian packages for use in molecular biology,
structural biology and other biological sciences.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-bio -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/menu/
-rw-r--r-- root/root 2599 2023-05-22 12:04 ./usr/share/blends/med/menu/blast2
-rw-r--r-- root/root 4032 2023-05-22 12:04 ./usr/share/blends/med/menu/ncbi-tools-bin
-rw-r--r-- root/root 1220 2023-05-22 12:04 ./usr/share/blends/med/menu/ncbi-tools-x11
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 8 2023-05-22 12:04 ./usr/share/blends/tasks/med/bio
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-bio/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-bio/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-bio/README.Debian
-rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-bio/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-bio/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 89 2023-05-22 12:04 ./usr/share/lintian/overrides/med-bio
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-bio.1.gz -> med-config.1.gz
med-cloud_3.8.1_all.deb
-----------------------
new Debian package, version 2.0.
size 9468 bytes: control archive=2896 bytes.
2175 bytes, 16 lines control
343 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-cloud
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: abyss, acedb-other, aevol, alien-hunter, altree, amap-align, ampliconnoise, aragorn, arden, autodock, autodock-vina, autogrid, bamtools, bedtools, bioperl, bioperl-run, biosquid, bowtie, bowtie2, boxshade, bwa, cassiopee, cd-hit, cdbfasta, circos, clearcut, clonalframe, clustalo, clustalw, concavity, conservation-code, datamash, dialign, dialign-tx, discosnp, disulfinder, dnaclust, dssp, embassy-domainatrix, embassy-domalign, embassy-domsearch, emboss, exonerate, fastdnaml, fastlink, fastqc, fasttree, fitgcp, flexbar, freecontact, gasic, genometools, gff2aplot, gff2ps, glam2, gmap, grinder, gromacs, hhsuite, hisat2, hmmer, idba, infernal, jellyfish, kalign, kissplice, last-align, loki, macs, mafft, mapsembler2, maq, melting, minia, mipe, mira-assembler, mlv-smile, mothur, mrbayes, mummer, muscle, muscle3, mustang, ncbi-epcr, ncbi-tools-bin, ncoils, neobio, paraclu, parsinsert, pdb2pqr, perm, phyml, phyutility, picard-tools, plink, plink1.9, plink2, poa, prank, prime-phylo, primer3, probabel, probcons, proda, prodigal, python3-biomaj3-cli, python3-biopython, python3-cogent3, qiime, r-bioc-edger, r-bioc-hilbertvis, r-cran-pvclust, r-cran-qtl, r-cran-vegan, r-other-mott-happy.hbrem, raster3d, readseq, rnahybrid, rtax, samtools, seqan-apps, sibsim4, sigma-align, sim4, smalt, snap, soapdenovo, soapdenovo2, squizz, sra-toolkit, ssake, staden-io-lib-utils, t-coffee, tabix, theseus, tigr-glimmer, tree-puzzle | tree-ppuzzle, vcftools, velvet, wise
Suggests: anfo, bagpipe, blast2, cufflinks, embassy-phylip, giira
Section: metapackages
Priority: optional
Description: Debian Med bioinformatics applications usable in cloud computing
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences, that do not
depend on graphical toolkits and therefore can fit on system images for use
in cloud computing clusters, where space can be limited.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-cloud -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 6 2023-05-22 12:04 ./usr/share/blends/tasks/med/cloud
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-cloud/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-cloud/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-cloud/README.Debian
-rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-cloud/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-cloud/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-cloud.1.gz -> med-config.1.gz
med-config_3.8.1_all.deb
------------------------
new Debian package, version 2.0.
size 11112 bytes: control archive=3408 bytes.
87 bytes, 3 lines conffiles
1416 bytes, 54 lines * config #!/bin/sh
1591 bytes, 40 lines control
396 bytes, 6 lines md5sums
1355 bytes, 46 lines * postinst #!/bin/sh
212 bytes, 8 lines * postrm #!/bin/sh
2717 bytes, 48 lines templates
Package: med-config
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 40
Depends: adduser, debconf (>= 0.5) | debconf-2.0, menu, blends-common (>= 0.6.15)
Conflicts: med-common
Replaces: med-common
Provides: med-common
Section: misc
Priority: optional
Description: Debian Med general config package
This package provides the basic infrastructure of all metapackages assembled
by the Debian Med team.
.
This metapackage provides common features shared between the different
metapackages of the project. Moreover it introduces a method to handle a
'med' system users group using debconf.
.
The Debian Med Project include metapackages for different tasks, which are:
* applications for microbiological research and support for development of
biological applications
* cloud computing in microbiological research
* drug databases
* dental surgery practice
* epidemiology and medical statistics
* image processing and support for imaging application development
* pharmacological research
* radiation oncology, diagnostic imaging and related fields
* medical practice
* psychological research and practice
* rehabilitation
* typesetting and publishing
* miscellaneous tools
.
Each task is represented by a metapackage. Metapackages do not contain
executable programs, but rather dependencies from other packages. This way
you will conveniently get all free medical software which is available for
Debian by simply installing the relevant metapackage
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/apt/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/apt/apt.conf.d/
-rw-r--r-- root/root 255 2023-05-22 12:04 ./etc/apt/apt.conf.d/90med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/blends/med/
-rw-r--r-- root/root 260 2023-05-22 12:04 ./etc/blends/med/med.conf
drwxr-xr-x root/root 0 2023-05-22 12:04 ./etc/profile.d/
-rw-r--r-- root/root 905 2023-05-22 12:04 ./etc/profile.d/debian-med.sh
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
-rwxr-xr-x root/root 186 2023-05-22 12:04 ./usr/bin/med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/lib/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/lib/tasksel/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/lib/tasksel/med-task-files -> ../../share/blends/blend-task-lister
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-config/
-rw-r--r-- root/root 311 2023-05-22 12:04 ./usr/share/doc/med-config/NEWS.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-config/README
-rw-r--r-- root/root 4901 2023-05-22 12:04 ./usr/share/doc/med-config/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-config/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
-rw-r--r-- root/root 328 2023-05-22 12:04 ./usr/share/man/man1/med-config.1.gz
med-data_3.8.1_all.deb
----------------------
new Debian package, version 2.0.
size 8640 bytes: control archive=2064 bytes.
534 bytes, 15 lines control
338 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-data
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: python3-hl7
Suggests: drugref.org, freediams, freemedforms-freedata, oscar
Section: metapackages
Priority: optional
Description: Debian Med drug databases
This metapackage will install free drug databases and related
applications. The database can be accessed by any EMR using
the application.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-data -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 13 2023-05-22 12:04 ./usr/share/blends/tasks/med/data
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-data/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-data/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-data/README.Debian
-rw-r--r-- root/root 4897 2023-05-22 12:04 ./usr/share/doc/med-data/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-data/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-data.1.gz -> med-config.1.gz
med-dental_3.8.1_all.deb
------------------------
new Debian package, version 2.0.
size 8628 bytes: control archive=2056 bytes.
513 bytes, 14 lines control
348 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-dental
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: entangle, imagetooth
Suggests: openmolar
Section: metapackages
Priority: optional
Description: Debian Med packages related to dental practice
This metapackage contains dependencies for a collection of software
which might be helpful for dentists to manage their practice.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-dental -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 7 2023-05-22 12:04 ./usr/share/blends/tasks/med/dental
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-dental/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-dental/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-dental/README.Debian
-rw-r--r-- root/root 4901 2023-05-22 12:04 ./usr/share/doc/med-dental/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-dental/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-dental.1.gz -> med-config.1.gz
med-epi_3.8.1_all.deb
---------------------
new Debian package, version 2.0.
size 9152 bytes: control archive=2404 bytes.
1139 bytes, 17 lines control
403 bytes, 6 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-epi
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 32
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: python3-seirsplus, python3-torch, python3-treetime, r-cran-covid19us, r-cran-diagnosismed, r-cran-epi, r-cran-epibasix, r-cran-epicalc, r-cran-epiestim, r-cran-epir, r-cran-epitools, r-cran-incidence, r-cran-kernelheaping, r-cran-lexrankr, r-cran-prevalence, r-cran-seroincidence, r-cran-sf, r-cran-sjplot, r-cran-surveillance
Suggests: chime, epifire, epigrass, netepi-analysis, netepi-collection, python3-epimodels, r-cran-cmprsk, r-cran-covid19, r-cran-msm, repast, shiny-server, ushahidi
Section: metapackages
Priority: optional
Description: Debian Med epidemiology related packages
This metapackage will install tools that are useful in epidemiological
research. Several packages making use of the GNU R data language for
statistical investigation. It might be a good idea to read the paper
"A short introduction to R for Epidemiology" at
http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-epi -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 13 2023-05-22 12:04 ./usr/share/blends/tasks/med/epi
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-epi/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-epi/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-epi/README.Debian
-rw-r--r-- root/root 4897 2023-05-22 12:04 ./usr/share/doc/med-epi/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-epi/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 232 2023-05-22 12:04 ./usr/share/lintian/overrides/med-epi
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-epi.1.gz -> med-config.1.gz
med-his_3.8.1_all.deb
---------------------
new Debian package, version 2.0.
size 8788 bytes: control archive=2204 bytes.
799 bytes, 17 lines control
333 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-his
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: fis-gtm, orthanc-wsi
Suggests: care2x, ewd-920, hkma-cms, ipath, openeyes, openmaxims, openmrs, oscar-mcmaster, patientos, tryton-modules-health, vista-foia, world-vista
Section: metapackages
Priority: optional
Description: Debian Med suggestions for Hospital Information Systems
This metapackage contains dependencies for software and that could
be useful ro run a Hospital Information System. While there is
continuous work going on to package a ready to install system currently
only preconditions are finished but hopefully helpful in hospitals
anyway.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-his -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 29 2023-05-22 12:04 ./usr/share/blends/tasks/med/his
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-his/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-his/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-his/README.Debian
-rw-r--r-- root/root 4899 2023-05-22 12:04 ./usr/share/doc/med-his/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-his/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-his.1.gz -> med-config.1.gz
med-imaging-dev_3.8.1_all.deb
-----------------------------
new Debian package, version 2.0.
size 9036 bytes: control archive=2456 bytes.
1612 bytes, 15 lines control
373 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-imaging-dev
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: cimg-dev, ctn-dev, gmic, libbart-dev, libbiosig-dev, libcifti-dev, libedf-dev, libgdf-dev, libgiftiio-dev, libinsighttoolkit5-dev, libismrmrd-dev, libmaxflow-dev, libmdc2-dev, libmia-2.4-dev, libmialm-dev, libmiaviewit-dev, libminc-dev, libnifti2-dev, libodil-dev, libopencv-dev, libopenigtlink-dev, libopenslide-dev, libpapyrus3-dev, libsight-dev, libteem-dev, libvigraimpex-dev, libvistaio-dev, libvolpack1-dev, libvtk-dicom-dev, libvtk9-dev, libxdf-dev, octave-bart, octave-dicom, octave-gdf, odin, python3-biosig, python3-bioxtasraw, python3-brian, python3-dcmstack, python3-dipy, python3-gdcm, python3-imageio, python3-mia, python3-mne, python3-nibabel, python3-nipy, python3-nipype, python3-nitime, python3-openslide, python3-pydicom, python3-pyxnat, python3-torchvision, python3-vigra, r-cran-rniftilib
Suggests: emokit, libbio-formats-java, libcamitk-dev, libcamp-dev, libctk-dev, libeegdev-dev, libfreeimage-dev, libgdcm2-dev, libics-dev, liblimereg-dev, libmni-perllib-perl, libnifti-doc, libopenmeeg-dev, libopenslide-java, libvia-dev, libvmtk-dev, libxdffileio-dev, python-vmtk, tifffile
Section: metapackages
Priority: optional
Description: Debian Med image processing and visualization packages development
This metapackage will install Debian packages which might be useful
for developing applications for medical image processing and
visualization.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-imaging-dev -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 20 2023-05-22 12:04 ./usr/share/blends/tasks/med/imaging-dev
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/README.Debian
-rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-imaging-dev/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-imaging-dev.1.gz -> med-config.1.gz
med-imaging_3.8.1_all.deb
-------------------------
new Debian package, version 2.0.
size 9560 bytes: control archive=2984 bytes.
2522 bytes, 22 lines control
353 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-imaging
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: aeskulap, amide, bart, bart-view, biosig-tools, ctn, ctsim, dcm2niix, dcmtk, dicom3tools, dicomnifti, dicomscope, gdf-tools, gwyddion, heudiconv, imagej, invesalius, ismrmrd-tools, king, libgdcm-tools, medcon, mia-tools, mia-viewit, mialmpick, minc-tools, mriconvert, mricron, mrtrix3, nifti-bin, odil, odin, openslide-tools, orthanc, orthanc-wsi, pixelmed-apps, plastimatch, python3-dipy, python3-nibabel, python3-nipy, python3-nipype, python3-nitime, python3-pydicom, python3-pyxid, python3-surfer, sigviewer, teem-apps, tifffile, vrrender, vtk-dicom-tools, xmedcon
Suggests: afni, ants, bart-cuda, bioimagesuite, bioimagexd, blox, brainvisa, camitk-imp, caret, cdmedicpacs, cellprofiler, cmtk, connectomeviewer, conquest-common, conquest-dbase, conquest-mysql, conquest-postgres, conquest-sqlite, crea, dcm4chee, devide, dicom4j, dicoogle, drjekyll, dti-query, dtitk, ecg2png, eeglab, elastix, fiji, freesurfer, fsl, fslview, gimias, ginkgocadx, hid, illustrate, imagemagick, imagevis3d, imview, incf-nidash-oneclick-clients, insightapplications, isis, itksnap, jemris, jist, kradview, libdcm4che-java, lipsia, maris, mayam, medisnap, mesa-test-tools, micromanager, mipav, miview, mni-autoreg, mni-colin27-nifti, mni-icbm152-nlin-2009, mni-n3, mrisim, omero, opendicom.net, openelectrophy, openmeeg-tools, opensourcepacs, openwalnut-qt4, orthanc-dicomweb, orthanc-gdcm, orthanc-imagej, orthanc-mysql, orthanc-neuro, orthanc-postgresql, orthanc-webviewer, paraview, piano, pngquant, pymeg, science-workflow, slicer, sofa-apps, stabilitycalc, stir, tempo, trimage, via-bin, visit, vmtk, voxbo, xnat
Section: metapackages
Priority: optional
Description: Debian Med image processing and visualization packages
This metapackage will install Debian packages which might be useful in
medical image processing and visualization.
.
On one hand, it installs several packages supporting various image file
formats and image management, like DICOM (Digital Imaging and
Communications in Medicine) which is the de-facto standard for medical
image management, and NIFTI. On the other hand, it provides a variety of
software packages that can be used for visualization and for image processing
- either from a graphical user interface, the command line, or implemented in
workflows.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-imaging -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 8 2023-05-22 12:04 ./usr/share/blends/tasks/med/imaging
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-imaging/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-imaging/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-imaging/README.Debian
-rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-imaging/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-imaging/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-imaging.1.gz -> med-config.1.gz
med-laboratory_3.8.1_all.deb
----------------------------
new Debian package, version 2.0.
size 8648 bytes: control archive=2064 bytes.
521 bytes, 14 lines control
368 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-laboratory
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: opencfu, orthanc-wsi
Suggests: catissuesuite, openelis, openfreezer
Section: metapackages
Priority: optional
Description: Debian Med suggestions for medical laboratories
This metapackage contains dependencies for software and that could
be useful ro run a medical laboratory.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-laboratory -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 11 2023-05-22 12:04 ./usr/share/blends/tasks/med/laboratory
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-laboratory/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-laboratory/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-laboratory/README.Debian
-rw-r--r-- root/root 4903 2023-05-22 12:04 ./usr/share/doc/med-laboratory/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-laboratory/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-laboratory.1.gz -> med-config.1.gz
med-oncology_3.8.1_all.deb
--------------------------
new Debian package, version 2.0.
size 8612 bytes: control archive=2040 bytes.
479 bytes, 14 lines control
358 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-oncology
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: orthanc-wsi, simrisc
Suggests: planunc, python3-dicompylercore, uw-prism
Section: metapackages
Priority: optional
Description: Debian Med packages for oncology
This metapackage will install tools that are useful for radiation
oncology.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-oncology -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 9 2023-05-22 12:04 ./usr/share/blends/tasks/med/oncology
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-oncology/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-oncology/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-oncology/README.Debian
-rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-oncology/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-oncology/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-oncology.1.gz -> med-config.1.gz
med-pharmacy_3.8.1_all.deb
--------------------------
new Debian package, version 2.0.
size 8636 bytes: control archive=2060 bytes.
538 bytes, 15 lines control
358 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-pharmacy
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: chemtool, r-cran-dosefinding, r-cran-rpact
Suggests: raccoon
Section: metapackages
Priority: optional
Description: Debian Med packages for pharmaceutical research
This metapackage contains dependencies for a
collection of software and documentation which is useful for
pharmaceutical research.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-pharmacy -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 13 2023-05-22 12:04 ./usr/share/blends/tasks/med/pharmacy
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/README.Debian
-rw-r--r-- root/root 4901 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-pharmacy/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-pharmacy.1.gz -> med-config.1.gz
med-physics_3.8.1_all.deb
-------------------------
new Debian package, version 2.0.
size 8936 bytes: control archive=2188 bytes.
684 bytes, 16 lines control
487 bytes, 7 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-physics
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 33
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: biosig-tools, gdf-tools, octave, r-base
Suggests: gate, libbiosig-dev, octave-biosig, openvibe, paw, paw++, paw-demos, python3-biosig, python3-multipletau
Section: metapackages
Priority: optional
Description: Debian Med packages for medical physicists
This metapackage contains dependencies for a
collection of software and documentation which is useful for
medical physicists in radiation oncology, diagnostics imaging
and related fields.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-physics -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/med/menu/
-rw-r--r-- root/root 120 2023-05-22 12:04 ./usr/share/blends/med/menu/octave
-rw-r--r-- root/root 104 2023-05-22 12:04 ./usr/share/blends/med/menu/r-base
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 8 2023-05-22 12:04 ./usr/share/blends/tasks/med/physics
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-physics/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-physics/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-physics/README.Debian
-rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-physics/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-physics/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-physics.1.gz -> med-config.1.gz
med-practice_3.8.1_all.deb
--------------------------
new Debian package, version 2.0.
size 8792 bytes: control archive=2220 bytes.
836 bytes, 14 lines control
358 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-practice
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: entangle, gnumed-client, gnumed-server, libchipcard-tools, orthanc, orthanc-wsi, oscar, qrisk2, r-cran-medadherence
Suggests: clearhealth, elementalclinic, elexis, freeb, freediams, freemed, freemedforms-emr, freeshim, ginkgocadx, libctapimkt1, medintux, mirrormed, mirth, openemr, openpms, openrep, proteus, remitt, resmedicinae, sqlclinic, thera-pi, tinyheb
Section: metapackages
Priority: optional
Description: Debian Med packages for practice management
This metapackage contains dependencies for a collection of software
which might be helpful for practitioners to manage their practice.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-practice -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 9 2023-05-22 12:04 ./usr/share/blends/tasks/med/practice
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-practice/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-practice/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-practice/README.Debian
-rw-r--r-- root/root 4898 2023-05-22 12:04 ./usr/share/doc/med-practice/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-practice/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-practice.1.gz -> med-config.1.gz
med-psychology_3.8.1_all.deb
----------------------------
new Debian package, version 2.0.
size 8704 bytes: control archive=2128 bytes.
696 bytes, 14 lines control
368 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-psychology
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: orthanc-neuro, praat, psignifit, python3-bioxtasraw, r-cran-foreign, r-cran-psy, r-cran-psych, r-cran-psychometric, r-cran-psychotree, r-cran-psyphy
Suggests: psychopy, python-pyepl, python3-bids-validator, python3-bmtk, science-psychophysics
Section: metapackages
Priority: optional
Description: Debian Med packages for psychology
This metapackage contains dependencies for a collection of software
which might be helpful for psychological research.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-psychology -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 11 2023-05-22 12:04 ./usr/share/blends/tasks/med/psychology
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-psychology/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-psychology/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-psychology/README.Debian
-rw-r--r-- root/root 4897 2023-05-22 12:04 ./usr/share/doc/med-psychology/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-psychology/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-psychology.1.gz -> med-config.1.gz
med-research_3.8.1_all.deb
--------------------------
new Debian package, version 2.0.
size 8592 bytes: control archive=2016 bytes.
447 bytes, 14 lines control
358 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-research
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: r-cran-rpact
Suggests: openclinica
Section: metapackages
Priority: optional
Description: Debian Med packages for medical research
This metapackage will install tools that are useful for
medical research.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-research -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 9 2023-05-22 12:04 ./usr/share/blends/tasks/med/research
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-research/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-research/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-research/README.Debian
-rw-r--r-- root/root 4901 2023-05-22 12:04 ./usr/share/doc/med-research/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-research/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-research.1.gz -> med-config.1.gz
med-statistics_3.8.1_all.deb
----------------------------
new Debian package, version 2.0.
size 8692 bytes: control archive=2112 bytes.
673 bytes, 14 lines control
368 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-statistics
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: r-bioc-edger, r-bioc-limma, r-bioc-multtest, r-bioc-qvalue, r-cran-ade4, r-cran-beeswarm, r-cran-pvclust, r-cran-randomforest, r-cran-rwave, r-cran-snowfall, r-cran-waveslim, r-cran-wavethresh
Suggests: rstudio, science-statistics
Section: metapackages
Priority: optional
Description: Debian Med statistics
This metapackage will install packages which are helpful to do statistics
with a special focus on tasks in medical care.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-statistics -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 11 2023-05-22 12:04 ./usr/share/blends/tasks/med/statistics
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-statistics/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-statistics/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-statistics/README.Debian
-rw-r--r-- root/root 4904 2023-05-22 12:04 ./usr/share/doc/med-statistics/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-statistics/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-statistics.1.gz -> med-config.1.gz
med-tasks_3.8.1_all.deb
-----------------------
new Debian package, version 2.0.
size 8340 bytes: control archive=680 bytes.
400 bytes, 14 lines control
356 bytes, 5 lines md5sums
Package: med-tasks
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 24
Depends: tasksel
Section: misc
Priority: optional
Description: Debian Med tasks for tasksel
This package provides Debian Med tasks in tasksel.
.
These tasks are described in detail at
https://blends.debian.org/med/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-tasks/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-tasks/README
-rw-r--r-- root/root 4900 2023-05-22 12:04 ./usr/share/doc/med-tasks/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-tasks/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 219 2023-05-22 12:04 ./usr/share/lintian/overrides/med-tasks
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/tasksel/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/tasksel/descs/
-rw-r--r-- root/root 6102 2023-05-22 12:04 ./usr/share/tasksel/descs/debian-med-tasks.desc
med-tools_3.8.1_all.deb
-----------------------
new Debian package, version 2.0.
size 8748 bytes: control archive=2176 bytes.
733 bytes, 14 lines control
343 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-tools
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: cronometer, cycle, edfbrowser, galileo, hunspell-de-med, hunspell-en-med, nutsqlite, pcalendar, python3-fitbit, quitcount, r-cran-fitbitscraper, r-cran-fitcoach, wgerman-medical, workrave
Suggests: entangle, goldencheetah, mencal, mssstest, nut-nutrition, oscar, pesco, pondus
Section: metapackages
Priority: optional
Description: Debian Med several tools
This metapackage will install tools for several purposes in health care.
Currently it contains some simple programs for Personal Health.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-tools -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 6 2023-05-22 12:04 ./usr/share/blends/tasks/med/tools
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-tools/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-tools/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-tools/README.Debian
-rw-r--r-- root/root 4897 2023-05-22 12:04 ./usr/share/doc/med-tools/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-tools/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-tools.1.gz -> med-config.1.gz
med-typesetting_3.8.1_all.deb
-----------------------------
new Debian package, version 2.0.
size 8672 bytes: control archive=2096 bytes.
597 bytes, 15 lines control
373 bytes, 5 lines md5sums
2361 bytes, 69 lines * postinst #!/bin/sh
2092 bytes, 74 lines * prerm #!/bin/sh
Package: med-typesetting
Source: debian-med
Version: 3.8.1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 29
Depends: med-config (= 3.8.1), med-tasks (= 3.8.1)
Recommends: king, texlive-latex-extra, texlive-science
Suggests: biber, bibus, jabref-plugin-oo, kbibtex, r-cran-qqman
Section: metapackages
Priority: optional
Description: Debian Med support for typesetting and publishing
This metapackage will install Debian packages that might be helpful
for typesetting and publishing in medical care and structural
biology.
drwxr-xr-x root/root 0 2023-05-22 12:04 ./
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/bin/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/bin/med-typesetting -> med-config
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/blends/tasks/med/
-rw-r--r-- root/root 12 2023-05-22 12:04 ./usr/share/blends/tasks/med/typesetting
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/doc/med-typesetting/
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-typesetting/README
-rw-r--r-- root/root 939 2023-05-22 12:04 ./usr/share/doc/med-typesetting/README.Debian
-rw-r--r-- root/root 4904 2023-05-22 12:04 ./usr/share/doc/med-typesetting/changelog.gz
-rw-r--r-- root/root 430 2023-05-22 12:04 ./usr/share/doc/med-typesetting/copyright
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/
drwxr-xr-x root/root 0 2023-05-22 12:04 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2023-05-22 12:04 ./usr/share/man/man1/med-typesetting.1.gz -> med-config.1.gz
lintian
-------
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dpkg-deb: warning: root directory has unusual owner or group 998:999.
Hint: either pass --root-owner-group, see dpkg-build-api(7) or add an explicit 'Rules-Requires-Root: no' in debian/control.
dpkg-deb: warning: ignoring 1 warning about the control file(s)
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W: debian-med changes: distribution-and-changes-mismatch sid unstable
W: debian-med source: upstream-metadata-in-native-source [debian/upstream/metadata]
I: Lintian run was successful.
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Build Architecture: arm64
Build Type: binary
Build-Space: 5052
Build-Time: 11
Distribution: sid
Host Architecture: arm64
Install-Time: 25
Job: /tmp/debusine-fetch-exec-upload-vekqccqe/debian-med_3.8.1.dsc
Lintian: warn
Machine Architecture: arm64
Package: debian-med
Package-Time: 71
Source-Version: 3.8.1
Space: 5052
Status: successful
Version: 3.8.1
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Finished at 2024-11-16T00:31:12Z
Build needed 00:01:11, 5052k disk space