sbuild (Debian sbuild) 0.86.3~bpo12+1 (03 November 2024) on debusine-worker-arm64-demeter-08.freexian.com
+==============================================================================+
| dnaclust 3-7 (arm64) Sat, 16 Nov 2024 01:22:35 +0000 |
+==============================================================================+
Package: dnaclust
Version: 3-7
Source Version: 3-7
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: binary
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/957781/system.tar.xz to /tmp/tmp.sbuild.UdmomGw121...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
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| Chroot Setup Commands |
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rm -f /etc/resolv.conf
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I: Finished running 'rm -f /etc/resolv.conf'.
Finished processing commands.
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Copying /tmp/debusine-fetch-exec-upload-zedr0ba2/dpkg-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zedr0ba2/dpkg_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zedr0ba2/dselect-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zedr0ba2/dselect_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zedr0ba2/libdpkg-dev_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zedr0ba2/dpkg-dev_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-zedr0ba2/libdpkg-perl_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/dnaclust-zzGDlG/resolver-pQCpxo' with '<<RESOLVERDIR>>'
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| Update chroot |
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Get:1 file:/build/dnaclust-zzGDlG/resolver-pawV3Z/apt_archive ./ InRelease
Ign:1 file:/build/dnaclust-zzGDlG/resolver-pawV3Z/apt_archive ./ InRelease
Get:2 file:/build/dnaclust-zzGDlG/resolver-pawV3Z/apt_archive ./ Release [606 B]
Get:3 http://deb.debian.org/debian sid InRelease [202 kB]
Get:2 file:/build/dnaclust-zzGDlG/resolver-pawV3Z/apt_archive ./ Release [606 B]
Get:4 file:/build/dnaclust-zzGDlG/resolver-pawV3Z/apt_archive ./ Release.gpg
Ign:4 file:/build/dnaclust-zzGDlG/resolver-pawV3Z/apt_archive ./ Release.gpg
Get:5 file:/build/dnaclust-zzGDlG/resolver-pawV3Z/apt_archive ./ Packages [9246 B]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9951 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 Components [4908 kB]
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Reading package lists...
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Building dependency tree...
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Calculating upgrade...
The following packages will be upgraded:
apt bsdextrautils bsdutils debianutils dpkg dpkg-dev libapt-pkg6.0t64
libaudit-common libaudit1 libblkid1 libbrotli1 libcap-ng0 libdpkg-perl
libglib2.0-0t64 libmarkdown2 libmount1 libpcre2-8-0 libseccomp2 libselinux1
libsemanage2 libsmartcols1 libuuid1 libxml2 login mount util-linux
26 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 7324 kB/10.8 MB of archives.
After this operation, 604 kB disk space will be freed.
Get:1 file:/build/dnaclust-zzGDlG/resolver-pawV3Z/apt_archive ./ dpkg 1.22.12~1.gbp82cafd [1513 kB]
Get:2 http://deb.debian.org/debian sid/main arm64 bsdutils arm64 1:2.40.2-11 [104 kB]
Get:3 file:/build/dnaclust-zzGDlG/resolver-pawV3Z/apt_archive ./ dpkg-dev 1.22.12~1.gbp82cafd [1337 kB]
Get:4 file:/build/dnaclust-zzGDlG/resolver-pawV3Z/apt_archive ./ libdpkg-perl 1.22.12~1.gbp82cafd [647 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 debianutils arm64 5.21 [92.1 kB]
Get:6 http://deb.debian.org/debian sid/main arm64 libapt-pkg6.0t64 arm64 2.9.11 [921 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 libblkid1 arm64 2.40.2-11 [162 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libmount1 arm64 2.40.2-11 [190 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 libsmartcols1 arm64 2.40.2-11 [135 kB]
Get:11 http://deb.debian.org/debian sid/main arm64 mount arm64 2.40.2-11 [153 kB]
Get:12 http://deb.debian.org/debian sid/main arm64 libuuid1 arm64 2.40.2-11 [35.7 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 util-linux arm64 2.40.2-11 [1170 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libpcre2-8-0 arm64 10.44-4 [243 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 libselinux1 arm64 3.7-3+b1 [72.1 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libseccomp2 arm64 2.5.5-1+b3 [46.8 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 apt arm64 2.9.11 [1287 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libaudit-common all 1:4.0.2-2 [12.7 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libcap-ng0 arm64 0.8.5-3+b1 [17.0 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libaudit1 arm64 1:4.0.2-2 [54.2 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 login arm64 1:4.16.0-2+really2.40.2-11 [80.0 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libglib2.0-0t64 arm64 2.82.2-3 [1411 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libsemanage2 arm64 3.7-2+b1 [84.5 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
debconf: delaying package configuration, since apt-utils is not installed
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| Fetch source files |
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Local sources
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/tmp/debusine-fetch-exec-upload-zedr0ba2/dnaclust_3-7.dsc exists in /tmp/debusine-fetch-exec-upload-zedr0ba2; copying to chroot
I: NOTICE: Log filtering will replace 'build/dnaclust-zzGDlG/dnaclust-3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/dnaclust-zzGDlG' with '<<BUILDDIR>>'
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| Install package build dependencies |
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Setup apt archive
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Merged Build-Depends: debhelper-compat (= 12), libboost-dev, libboost-program-options-dev, rename, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 12), libboost-dev, libboost-program-options-dev, rename, build-essential, fakeroot
dpkg-deb: warning: root directory has unusual owner or group 998:999.
Hint: either pass --root-owner-group, see dpkg-build-api(7) or add an explicit 'Rules-Requires-Root: no' in debian/control.
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Reading package lists...
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Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-strip-nondeterminism dwz fakeroot g++ g++-14 g++-14-aarch64-linux-gnu
g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
gcc-aarch64-linux-gnu libasan8 libboost-dev libboost-program-options-dev
libboost-program-options1.83-dev libboost-program-options1.83.0
libboost1.83-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libhwasan0 libisl23 libitm1 liblsan0 libmpc3 libmpfr6
libstdc++-14-dev libtool libtsan2 libubsan1 linux-libc-dev m4 po-debconf
rename rpcsvc-proto
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc dh-make gcc-14-doc gcc-multilib manpages-dev flex bison gdb
gcc-doc gdb-aarch64-linux-gnu libboost-doc libboost1.83-doc
libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev
libboost-context1.83-dev libboost-contract1.83-dev
libboost-coroutine1.83-dev libboost-date-time1.83-dev
libboost-exception1.83-dev libboost-fiber1.83-dev
libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
libboost-numpy1.83-dev libboost-python1.83-dev libboost-random1.83-dev
libboost-regex1.83-dev libboost-serialization1.83-dev
libboost-stacktrace1.83-dev libboost-system1.83-dev libboost-test1.83-dev
libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev
libboost-url1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev
libmpfrc++-dev libntl-dev libc-devtools glibc-doc libstdc++-14-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl
Recommended packages:
manpages manpages-dev libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-strip-nondeterminism dwz fakeroot g++ g++-14 g++-14-aarch64-linux-gnu
g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
gcc-aarch64-linux-gnu libasan8 libboost-dev libboost-program-options-dev
libboost-program-options1.83-dev libboost-program-options1.83.0
libboost1.83-dev libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libhwasan0 libisl23 libitm1 liblsan0 libmpc3 libmpfr6
libstdc++-14-dev libtool libtsan2 libubsan1 linux-libc-dev m4 po-debconf
rename rpcsvc-proto sbuild-build-depends-main-dummy
0 upgraded, 53 newly installed, 0 to remove and 0 not upgraded.
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Get:21 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-8 [2579 kB]
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Get:24 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-8 [1039 kB]
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Get:27 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8 [17.7 MB]
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Get:36 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:37 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-8 [517 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:42 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 libboost1.83-dev arm64 1.83.0-3.2+b1 [10.6 MB]
Get:49 http://deb.debian.org/debian sid/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B]
Get:50 http://deb.debian.org/debian sid/main arm64 libboost-program-options1.83.0 arm64 1.83.0-3.2+b1 [331 kB]
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Get:52 http://deb.debian.org/debian sid/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B]
Get:53 http://deb.debian.org/debian sid/main arm64 rename all 2.02-1 [21.8 kB]
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Setting up libboost-dev:arm64 (1.83.0.2+b2) ...
Setting up gcc-14-aarch64-linux-gnu (14.2.0-8) ...
Setting up gcc-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up g++-14-aarch64-linux-gnu (14.2.0-8) ...
Setting up gcc-14 (14.2.0-8) ...
Setting up g++-aarch64-linux-gnu (4:14.2.0-1) ...
Setting up g++-14 (14.2.0-8) ...
Setting up libtool (2.4.7-8) ...
Setting up gcc (4:14.2.0-1) ...
Setting up dh-autoreconf (20) ...
Setting up g++ (4:14.2.0-1) ...
update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
Setting up build-essential (12.12) ...
Setting up debhelper (13.20) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for man-db (2.13.0-1) ...
Processing triggers for libc-bin (2.40-3) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.12~1.gbp82cafd g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 linux-libc-dev_6.11.7-1
Package versions: appstream_1.0.3-1+b1 apt_2.9.11 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-11 bsdutils_1:2.40.2-11 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-8 cpp-14-aarch64-linux-gnu_14.2.0-8 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-9+b1 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1+b1 diffutils_1:3.10-1+b1 dpkg_1.22.12~1.gbp82cafd dpkg-dev_1.22.12~1.gbp82cafd dwz_0.15-1+b1 e2fsprogs_1.47.1-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-8 g++-14-aarch64-linux-gnu_14.2.0-8 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-8 gcc-14-aarch64-linux-gnu_14.2.0-8 gcc-14-base_14.2.0-8 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: dnaclust
Binary: dnaclust
Architecture: any
Version: 3-7
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: http://dnaclust.sourceforge.net/
Standards-Version: 4.4.0
Vcs-Browser: https://salsa.debian.org/med-team/dnaclust
Vcs-Git: https://salsa.debian.org/med-team/dnaclust.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 12), libboost-dev, libboost-program-options-dev, rename
Package-List:
dnaclust deb science optional arch=any
Checksums-Sha1:
6d61297157dd954b35122b15d43cc78b5d1a749e 23485 dnaclust_3.orig.tar.gz
883ed45d787563dce965d96f20ac0b110d82de59 36972 dnaclust_3-7.debian.tar.xz
Checksums-Sha256:
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e18171ee25c15cad70174292b01fdef7763f239c1026e728a848c2653e641c6f 36972 dnaclust_3-7.debian.tar.xz
Files:
68e8c69bc10c75b94aea684222f847a9 23485 dnaclust_3.orig.tar.gz
65d934be94276ff7bd5c3fb8a038691e 36972 dnaclust_3-7.debian.tar.xz
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gpgv: Signature made Fri Aug 9 09:22:11 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./dnaclust_3-7.dsc: no acceptable signature found
dpkg-source: info: extracting dnaclust in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking dnaclust_3.orig.tar.gz
dpkg-source: info: unpacking dnaclust_3-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_shel_path.patch
dpkg-source: info: applying do_not_staically_linking.patch
dpkg-source: info: applying resolve_name_space_conflict_fastasort.patch
dpkg-source: info: applying build_with_gcc6.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package dnaclust
dpkg-buildpackage: info: source version 3-7
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Saira Hussain <saira.h0213@zoho.com>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_auto_clean
make -j8 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f dnaclust.o dnaclust fasta.o fastaselect.o fastaselect fastasort fastasort.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
dh_auto_build
make -j8 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -std=c++98 -O2 dnaclust.cpp
g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -std=c++98 -O2 fasta.cpp
g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -std=c++98 -O2 fastaselect.cpp
g++ -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -std=c++98 -O2 fastasort.cpp -o fastasort.o
In file included from /usr/include/boost/any/fwd.hpp:20,
from /usr/include/boost/any.hpp:22,
from /usr/include/boost/program_options/value_semantic.hpp:12,
from /usr/include/boost/program_options/options_description.hpp:13,
from /usr/include/boost/program_options.hpp:15,
from dnaclust.cpp:14:
/usr/include/boost/any/fwd.hpp:34:1: note: ‘#pragma message: C++03 support is deprecated in Boost.Any 1.82 and will be removed in Boost.Any 1.84.’
34 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.Any 1.82 and will be removed in Boost.Any 1.84.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/type_index.hpp:39:1: note: ‘#pragma message: C++03 support is deprecated in Boost.TypeIndex 1.82 and will be removed in Boost.TypeIndex 1.84.’
39 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.TypeIndex 1.82 and will be removed in Boost.TypeIndex 1.84.")
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/any/fwd.hpp:20,
from /usr/include/boost/any.hpp:22,
from /usr/include/boost/program_options/value_semantic.hpp:12,
from /usr/include/boost/program_options/options_description.hpp:13,
from /usr/include/boost/program_options.hpp:15,
from fastasort.cpp:8:
/usr/include/boost/any/fwd.hpp:34:1: note: ‘#pragma message: C++03 support is deprecated in Boost.Any 1.82 and will be removed in Boost.Any 1.84.’
34 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.Any 1.82 and will be removed in Boost.Any 1.84.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/type_index.hpp:39:1: note: ‘#pragma message: C++03 support is deprecated in Boost.TypeIndex 1.82 and will be removed in Boost.TypeIndex 1.84.’
39 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.TypeIndex 1.82 and will be removed in Boost.TypeIndex 1.84.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/container_hash/detail/requires_cxx11.hpp:18:1: note: ‘#pragma message: C++03 support was deprecated in Boost.ContainerHash 1.82 and will be removed in Boost.ContainerHash 1.84. Please open an issue in https://github.com/boostorg/container_hash if you want it retained.’
18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.ContainerHash 1.82 and will be removed in Boost.ContainerHash 1.84. Please open an issue in https://github.com/boostorg/container_hash if you want it retained.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/container_hash/detail/requires_cxx11.hpp:18:1: note: ‘#pragma message: C++03 support was deprecated in Boost.ContainerHash 1.82 and will be removed in Boost.ContainerHash 1.84. Please open an issue in https://github.com/boostorg/container_hash if you want it retained.’
18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.ContainerHash 1.82 and will be removed in Boost.ContainerHash 1.84. Please open an issue in https://github.com/boostorg/container_hash if you want it retained.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/function/detail/requires_cxx11.hpp:18:1: note: ‘#pragma message: C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.’
18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/bind/detail/requires_cxx11.hpp:18:1: note: ‘#pragma message: C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.’
18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/lexical_cast.hpp:40:1: note: ‘#pragma message: C++03 support is deprecated in Boost.LexicalCast 1.82 and will be removed in Boost.LexicalCast 1.84.’
40 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.LexicalCast 1.82 and will be removed in Boost.LexicalCast 1.84.")
| ^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/any/fwd.hpp:20,
from /usr/include/boost/any.hpp:22,
from /usr/include/boost/program_options/value_semantic.hpp:12,
from /usr/include/boost/program_options/options_description.hpp:13,
from /usr/include/boost/program_options.hpp:15,
from fastaselect.cpp:8:
/usr/include/boost/any/fwd.hpp:34:1: note: ‘#pragma message: C++03 support is deprecated in Boost.Any 1.82 and will be removed in Boost.Any 1.84.’
34 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.Any 1.82 and will be removed in Boost.Any 1.84.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/function/detail/requires_cxx11.hpp:18:1: note: ‘#pragma message: C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.’
18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/type_index.hpp:39:1: note: ‘#pragma message: C++03 support is deprecated in Boost.TypeIndex 1.82 and will be removed in Boost.TypeIndex 1.84.’
39 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.TypeIndex 1.82 and will be removed in Boost.TypeIndex 1.84.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/container_hash/detail/requires_cxx11.hpp:18:1: note: ‘#pragma message: C++03 support was deprecated in Boost.ContainerHash 1.82 and will be removed in Boost.ContainerHash 1.84. Please open an issue in https://github.com/boostorg/container_hash if you want it retained.’
18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.ContainerHash 1.82 and will be removed in Boost.ContainerHash 1.84. Please open an issue in https://github.com/boostorg/container_hash if you want it retained.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/bind/detail/requires_cxx11.hpp:18:1: note: ‘#pragma message: C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.’
18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/lexical_cast.hpp:40:1: note: ‘#pragma message: C++03 support is deprecated in Boost.LexicalCast 1.82 and will be removed in Boost.LexicalCast 1.84.’
40 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.LexicalCast 1.82 and will be removed in Boost.LexicalCast 1.84.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/function/detail/requires_cxx11.hpp:18:1: note: ‘#pragma message: C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.’
18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Function 1.82 and will be removed in Boost.Function 1.84. Please open an issue in https://github.com/boostorg/function if you want it retained.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/bind/detail/requires_cxx11.hpp:18:1: note: ‘#pragma message: C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.’
18 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.Bind 1.82 and will be removed in Boost.Bind 1.84. Please open an issue in https://github.com/boostorg/bind if you want it retained.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/lexical_cast.hpp:40:1: note: ‘#pragma message: C++03 support is deprecated in Boost.LexicalCast 1.82 and will be removed in Boost.LexicalCast 1.84.’
40 | BOOST_PRAGMA_MESSAGE("C++03 support is deprecated in Boost.LexicalCast 1.82 and will be removed in Boost.LexicalCast 1.84.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:19:1: note: ‘#pragma message: C++03 support was deprecated in Boost.SmartPtr 1.82 and will be removed in Boost.SmartPtr 1.84. Please open an issue in https://github.com/boostorg/smart_ptr if you want it retained.’
19 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.SmartPtr 1.82 and will be removed in Boost.SmartPtr 1.84. Please open an issue in https://github.com/boostorg/smart_ptr if you want it retained.")
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:19:1: note: ‘#pragma message: C++03 support was deprecated in Boost.SmartPtr 1.82 and will be removed in Boost.SmartPtr 1.84. Please open an issue in https://github.com/boostorg/smart_ptr if you want it retained.’
19 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.SmartPtr 1.82 and will be removed in Boost.SmartPtr 1.84. Please open an issue in https://github.com/boostorg/smart_ptr if you want it retained.")
| ^~~~~~~~~~~~~~~~~~~~
dnaclust.cpp: In function ‘void makeCluster()’:
dnaclust.cpp:1337:12: warning: variable ‘num_threads_to_use’ set but not used [-Wunused-but-set-variable]
1337 | size_t num_threads_to_use = num_threads;
| ^~~~~~~~~~~~~~~~~~
dnaclust.cpp:1443:11: warning: variable ‘num_threads_to_use’ set but not used [-Wunused-but-set-variable]
1443 | int num_threads_to_use = num_threads;
| ^~~~~~~~~~~~~~~~~~
/usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:19:1: note: ‘#pragma message: C++03 support was deprecated in Boost.SmartPtr 1.82 and will be removed in Boost.SmartPtr 1.84. Please open an issue in https://github.com/boostorg/smart_ptr if you want it retained.’
19 | BOOST_PRAGMA_MESSAGE("C++03 support was deprecated in Boost.SmartPtr 1.82 and will be removed in Boost.SmartPtr 1.84. Please open an issue in https://github.com/boostorg/smart_ptr if you want it retained.")
| ^~~~~~~~~~~~~~~~~~~~
dnaclust.cpp: In function ‘int main(int, char**)’:
dnaclust.cpp:1945:11: warning: variable ‘num_threads_to_use’ set but not used [-Wunused-but-set-variable]
1945 | int num_threads_to_use = num_threads;
| ^~~~~~~~~~~~~~~~~~
dnaclust.cpp:2135:14: warning: variable ‘num_threads_to_use’ set but not used [-Wunused-but-set-variable]
2135 | size_t num_threads_to_use = num_threads;
| ^~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -std=c++98 -O2 -Wl,-z,relro -Wl,-z,now fastasort.o fasta.o -lboost_program_options -o fastasort
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -std=c++98 -O2 -Wl,-z,relro -Wl,-z,now fastaselect.o fasta.o -lboost_program_options -o fastaselect
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -std=c++98 -O2 -Wl,-z,relro -Wl,-z,now dnaclust.o fasta.o -lboost_program_options -o dnaclust -lpthread
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/dnaclust/
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
prename 's/\.sh//' /<<PKGBUILDDIR>>/debian/dnaclust/usr/bin/*
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz
dh_strip
dh_makeshlibs
dh_shlibdeps
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'dnaclust-dbgsym' in '../dnaclust-dbgsym_3-7_arm64.deb'.
dpkg-deb: building package 'dnaclust' in '../dnaclust_3-7_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../dnaclust_3-7_arm64.buildinfo
dpkg-genchanges --build=binary -O../dnaclust_3-7_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-11-16T01:23:49Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
dnaclust_3-7_arm64.changes:
---------------------------
Format: 1.8
Date: Thu, 08 Aug 2019 13:08:28 +0100
Source: dnaclust
Binary: dnaclust dnaclust-dbgsym
Architecture: arm64
Version: 3-7
Distribution: sid
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Saira Hussain <saira.h0213@zoho.com>
Description:
dnaclust - tool for clustering millions of short DNA sequences
Changes:
dnaclust (3-7) unstable; urgency=medium
.
* Team upload.
.
[ Saira Hussain ]
* Add autopkgtests
.
[ Andreas Tille ]
* debhelper-compat 12
* Standards-Version: 4.4.0
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/control
* Use secure URI in debian/watch.
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: dnaclust
Binary: dnaclust dnaclust-dbgsym
Architecture: arm64
Version: 3-7
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Sat, 16 Nov 2024 01:23:49 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.72-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.22.5-2),
autotools-dev (= 20220109.1),
base-files (= 13.5),
base-passwd (= 3.6.5),
bash (= 5.2.32-1+b2),
binutils (= 2.43.1-5),
binutils-aarch64-linux-gnu (= 2.43.1-5),
binutils-common (= 2.43.1-5),
bsdextrautils (= 2.40.2-11),
bsdutils (= 1:2.40.2-11),
build-essential (= 12.12),
bzip2 (= 1.0.8-6),
coreutils (= 9.5-1+b1),
cpp (= 4:14.2.0-1),
cpp-14 (= 14.2.0-8),
cpp-14-aarch64-linux-gnu (= 14.2.0-8),
cpp-aarch64-linux-gnu (= 4:14.2.0-1),
dash (= 0.5.12-9+b1),
debconf (= 1.5.87),
debhelper (= 13.20),
debianutils (= 5.21),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.14.0-1),
diffutils (= 1:3.10-1+b1),
dpkg (= 1.22.12~1.gbp82cafd),
dpkg-dev (= 1.22.12~1.gbp82cafd),
dwz (= 0.15-1+b1),
file (= 1:5.45-3+b1),
findutils (= 4.10.0-3),
g++ (= 4:14.2.0-1),
g++-14 (= 14.2.0-8),
g++-14-aarch64-linux-gnu (= 14.2.0-8),
g++-aarch64-linux-gnu (= 4:14.2.0-1),
gcc (= 4:14.2.0-1),
gcc-14 (= 14.2.0-8),
gcc-14-aarch64-linux-gnu (= 14.2.0-8),
gcc-14-base (= 14.2.0-8),
gcc-aarch64-linux-gnu (= 4:14.2.0-1),
gettext (= 0.22.5-2),
gettext-base (= 0.22.5-2),
grep (= 3.11-4+b1),
groff-base (= 1.23.0-5),
gzip (= 1.12-1.1+b1),
hostname (= 3.25),
init-system-helpers (= 1.67),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.2-2+b1),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 14.2.0-8),
libatomic1 (= 14.2.0-8),
libattr1 (= 1:2.5.2-2),
libaudit-common (= 1:4.0.2-2),
libaudit1 (= 1:4.0.2-2),
libbinutils (= 2.43.1-5),
libblkid1 (= 2.40.2-11),
libboost-dev (= 1.83.0.2+b2),
libboost-program-options-dev (= 1.83.0.2+b2),
libboost-program-options1.83-dev (= 1.83.0-3.2+b1),
libboost-program-options1.83.0 (= 1.83.0-3.2+b1),
libboost1.83-dev (= 1.83.0-3.2+b1),
libbz2-1.0 (= 1.0.8-6),
libc-bin (= 2.40-3),
libc-dev-bin (= 2.40-3),
libc6 (= 2.40-3),
libc6-dev (= 2.40-3),
libcap-ng0 (= 0.8.5-3+b1),
libcap2 (= 1:2.66-5+b1),
libcc1-0 (= 14.2.0-8),
libcrypt-dev (= 1:4.4.36-5),
libcrypt1 (= 1:4.4.36-5),
libctf-nobfd0 (= 2.43.1-5),
libctf0 (= 2.43.1-5),
libdb5.3t64 (= 5.3.28+dfsg2-9),
libdebconfclient0 (= 0.273),
libdebhelper-perl (= 13.20),
libdpkg-perl (= 1.22.12~1.gbp82cafd),
libelf1t64 (= 0.192-4),
libfile-stripnondeterminism-perl (= 1.14.0-1),
libgcc-14-dev (= 14.2.0-8),
libgcc-s1 (= 14.2.0-8),
libgdbm-compat4t64 (= 1.24-2),
libgdbm6t64 (= 1.24-2),
libgmp10 (= 2:6.3.0+dfsg-2+b2),
libgomp1 (= 14.2.0-8),
libgprofng0 (= 2.43.1-5),
libhwasan0 (= 14.2.0-8),
libicu72 (= 72.1-5+b1),
libisl23 (= 0.27-1),
libitm1 (= 14.2.0-8),
libjansson4 (= 2.14-2+b3),
liblsan0 (= 14.2.0-8),
liblzma5 (= 5.6.3-1+b1),
libmagic-mgc (= 1:5.45-3+b1),
libmagic1t64 (= 1:5.45-3+b1),
libmd0 (= 1.1.0-2+b1),
libmount1 (= 2.40.2-11),
libmpc3 (= 1.3.1-1+b3),
libmpfr6 (= 4.2.1-1+b2),
libpam-modules (= 1.5.3-7+b1),
libpam-modules-bin (= 1.5.3-7+b1),
libpam-runtime (= 1.5.3-7),
libpam0g (= 1.5.3-7+b1),
libpcre2-8-0 (= 10.44-4),
libperl5.40 (= 5.40.0-7),
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libsframe1 (= 2.43.1-5),
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libssl3t64 (= 3.3.2-2),
libstdc++-14-dev (= 14.2.0-8),
libstdc++6 (= 14.2.0-8),
libsystemd0 (= 257~rc1-4),
libtinfo6 (= 6.5-2+b1),
libtool (= 2.4.7-8),
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libuchardet0 (= 0.0.8-1+b2),
libudev1 (= 257~rc1-4),
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libuuid1 (= 2.40.2-11),
libxml2 (= 2.12.7+dfsg+really2.9.14-0.2+b1),
libzstd1 (= 1.5.6+dfsg-1+b1),
linux-libc-dev (= 6.11.7-1),
m4 (= 1.4.19-4),
make (= 4.3-4.1+b1),
man-db (= 2.13.0-1),
mawk (= 1.3.4.20240905-1),
ncurses-base (= 6.5-2),
ncurses-bin (= 6.5-2+b1),
openssl-provider-legacy (= 3.3.2-2),
patch (= 2.7.6-7+b1),
perl (= 5.40.0-7),
perl-base (= 5.40.0-7),
perl-modules-5.40 (= 5.40.0-7),
po-debconf (= 1.0.21+nmu1),
rename (= 2.02-1),
rpcsvc-proto (= 1.4.3-1+b1),
sed (= 4.9-2+b1),
sensible-utils (= 0.0.24),
sysvinit-utils (= 3.11-1),
tar (= 1.35+dfsg-3+b1),
util-linux (= 2.40.2-11),
xz-utils (= 5.6.3-1+b1),
zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
DEB_BUILD_OPTIONS="parallel=8"
LANG="en_US.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1565266108"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
dnaclust-dbgsym_3-7_arm64.deb
-----------------------------
new Debian package, version 2.0.
size 1172676 bytes: control archive=696 bytes.
449 bytes, 12 lines control
404 bytes, 4 lines md5sums
Package: dnaclust-dbgsym
Source: dnaclust
Version: 3-7
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1258
Depends: dnaclust (= 3-7)
Section: debug
Priority: optional
Description: debug symbols for dnaclust
Build-Ids: 4b97447c3d2307243a8fdc4de60aef535fa6b353 b9224097be99d164727a3c2c4cd33dbb0d20a421 dcfc711f840f2ee48673837c4c77790a6e1a94d2
drwxr-xr-x root/root 0 2019-08-08 12:08 ./
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/lib/
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/lib/debug/
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/lib/debug/.build-id/4b/
-rw-r--r-- root/root 263136 2019-08-08 12:08 ./usr/lib/debug/.build-id/4b/97447c3d2307243a8fdc4de60aef535fa6b353.debug
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/lib/debug/.build-id/b9/
-rw-r--r-- root/root 174840 2019-08-08 12:08 ./usr/lib/debug/.build-id/b9/224097be99d164727a3c2c4cd33dbb0d20a421.debug
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/lib/debug/.build-id/dc/
-rw-r--r-- root/root 776432 2019-08-08 12:08 ./usr/lib/debug/.build-id/dc/fc711f840f2ee48673837c4c77790a6e1a94d2.debug
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/lib/debug/.dwz/aarch64-linux-gnu/
-rw-r--r-- root/root 58040 2019-08-08 12:08 ./usr/lib/debug/.dwz/aarch64-linux-gnu/dnaclust.debug
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/share/
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/share/doc/
lrwxrwxrwx root/root 0 2019-08-08 12:08 ./usr/share/doc/dnaclust-dbgsym -> dnaclust
dnaclust_3-7_arm64.deb
----------------------
new Debian package, version 2.0.
size 107544 bytes: control archive=1128 bytes.
867 bytes, 18 lines control
755 bytes, 12 lines md5sums
Package: dnaclust
Version: 3-7
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 732
Depends: libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 14)
Section: science
Priority: optional
Homepage: http://dnaclust.sourceforge.net/
Description: tool for clustering millions of short DNA sequences
dnaclust is a tool for clustering large number of short DNA sequences.
The clusters are created in such a way that the "radius" of each
clusters is no more than the specified threshold.
.
The input sequences to be clustered should be in Fasta format. The id
of each sequence is based on the first word of the seqeunce in the Fasta
format. The first word is the prefix of the header up to the first
occurrence of white space characters in the header.
drwxr-xr-x root/root 0 2019-08-08 12:08 ./
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/bin/
-rwxr-xr-x root/root 199032 2019-08-08 12:08 ./usr/bin/dnaclust
-rwxr-xr-x root/root 2156 2019-08-08 12:08 ./usr/bin/dnaclust-abun
-rwxr-xr-x root/root 2976 2019-08-08 12:08 ./usr/bin/dnaclust-ref
-rwxr-xr-x root/root 3607 2019-08-08 12:08 ./usr/bin/find-large-clusters
-rwxr-xr-x root/root 635 2019-08-08 12:08 ./usr/bin/generate_test_clusters
-rwxr-xr-x root/root 1501 2019-08-08 12:08 ./usr/bin/star-align
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/lib/
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/lib/dnaclust/
-rwxr-xr-x root/root 67920 2019-08-08 12:08 ./usr/lib/dnaclust/fastaselect
-rwxr-xr-x root/root 67840 2019-08-08 12:08 ./usr/lib/dnaclust/fastasort
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/share/
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/share/doc/
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/share/doc/dnaclust/
-rw-r--r-- root/root 687 2019-08-08 12:08 ./usr/share/doc/dnaclust/changelog.Debian.gz
-rw-r--r-- root/root 1044 2019-08-08 12:08 ./usr/share/doc/dnaclust/copyright
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/share/doc/dnaclust/examples/
-rwxr-xr-x root/root 379530 2019-08-08 12:08 ./usr/share/doc/dnaclust/examples/ebola.fasta
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/share/man/
drwxr-xr-x root/root 0 2019-08-08 12:08 ./usr/share/man/man1/
-rw-r--r-- root/root 3114 2019-08-08 12:08 ./usr/share/man/man1/dnaclust.1.gz
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W: dnaclust changes: distribution-and-changes-mismatch sid unstable
W: dnaclust: executable-not-elf-or-script [usr/share/doc/dnaclust/examples/ebola.fasta]
W: dnaclust: no-manual-page [usr/bin/dnaclust-abun]
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Build Architecture: arm64
Build Type: binary
Build-Space: 17264
Build-Time: 17
Distribution: sid
Host Architecture: arm64
Install-Time: 22
Job: /tmp/debusine-fetch-exec-upload-zedr0ba2/dnaclust_3-7.dsc
Lintian: warn
Machine Architecture: arm64
Package: dnaclust
Package-Time: 74
Source-Version: 3-7
Space: 17264
Status: successful
Version: 3-7
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Finished at 2024-11-16T01:23:49Z
Build needed 00:01:14, 17264k disk space