sbuild (Debian sbuild) 0.86.3~bpo12+1 (03 November 2024) on debusine-worker-arm64-demeter-07.freexian.com
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| flash 1.2.11-2 (arm64) Sat, 16 Nov 2024 03:43:58 +0000 |
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Package: flash
Version: 1.2.11-2
Source Version: 1.2.11-2
Distribution: sid
Machine Architecture: arm64
Host Architecture: arm64
Build Architecture: arm64
Build Type: binary
I: No tarballs found in /var/lib/debusine/worker/.cache/sbuild
Unpacking /var/lib/debusine/worker/system-images/957781/system.tar.xz to /tmp/tmp.sbuild.KaQucTMK7A...
I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<<CHROOT>>'
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| Chroot Setup Commands |
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rm -f /etc/resolv.conf
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I: Finished running 'rm -f /etc/resolv.conf'.
Finished processing commands.
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Copying /tmp/debusine-fetch-exec-upload-_4numysi/dpkg-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-_4numysi/dpkg_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-_4numysi/dselect-dbgsym_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-_4numysi/dselect_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-_4numysi/libdpkg-dev_1.22.12~1.gbp82cafd_arm64.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-_4numysi/dpkg-dev_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
Copying /tmp/debusine-fetch-exec-upload-_4numysi/libdpkg-perl_1.22.12~1.gbp82cafd_all.deb to /<<CHROOT>>...
I: NOTICE: Log filtering will replace 'build/flash-bzHgIF/resolver-PoNj84' with '<<RESOLVERDIR>>'
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| Update chroot |
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Get:1 file:/build/flash-bzHgIF/resolver-QQxUhe/apt_archive ./ InRelease
Ign:1 file:/build/flash-bzHgIF/resolver-QQxUhe/apt_archive ./ InRelease
Get:2 file:/build/flash-bzHgIF/resolver-QQxUhe/apt_archive ./ Release [606 B]
Get:3 http://deb.debian.org/debian sid InRelease [202 kB]
Get:2 file:/build/flash-bzHgIF/resolver-QQxUhe/apt_archive ./ Release [606 B]
Get:4 file:/build/flash-bzHgIF/resolver-QQxUhe/apt_archive ./ Release.gpg
Ign:4 file:/build/flash-bzHgIF/resolver-QQxUhe/apt_archive ./ Release.gpg
Get:5 file:/build/flash-bzHgIF/resolver-QQxUhe/apt_archive ./ Packages [9246 B]
Get:6 http://deb.debian.org/debian sid/main arm64 Packages [9952 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 Components [4911 kB]
Fetched 15.1 MB in 2s (6284 kB/s)
Reading package lists...
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Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
apt bsdextrautils bsdutils debianutils dpkg dpkg-dev libapt-pkg6.0t64
libaudit-common libaudit1 libblkid1 libbrotli1 libcap-ng0 libdpkg-perl
libglib2.0-0t64 libmarkdown2 libmount1 libpcre2-8-0 libseccomp2 libselinux1
libsemanage2 libsmartcols1 libuuid1 libxml2 login login.defs mount passwd
util-linux
28 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 8719 kB/12.2 MB of archives.
After this operation, 603 kB disk space will be freed.
Get:1 http://deb.debian.org/debian sid/main arm64 bsdutils arm64 1:2.40.2-11 [104 kB]
Get:2 file:/build/flash-bzHgIF/resolver-QQxUhe/apt_archive ./ dpkg 1.22.12~1.gbp82cafd [1513 kB]
Get:3 file:/build/flash-bzHgIF/resolver-QQxUhe/apt_archive ./ dpkg-dev 1.22.12~1.gbp82cafd [1337 kB]
Get:4 http://deb.debian.org/debian sid/main arm64 debianutils arm64 5.21 [92.1 kB]
Get:5 http://deb.debian.org/debian sid/main arm64 libapt-pkg6.0t64 arm64 2.9.11 [921 kB]
Get:6 file:/build/flash-bzHgIF/resolver-QQxUhe/apt_archive ./ libdpkg-perl 1.22.12~1.gbp82cafd [647 kB]
Get:7 http://deb.debian.org/debian sid/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB]
Get:8 http://deb.debian.org/debian sid/main arm64 libblkid1 arm64 2.40.2-11 [162 kB]
Get:9 http://deb.debian.org/debian sid/main arm64 libmount1 arm64 2.40.2-11 [190 kB]
Get:10 http://deb.debian.org/debian sid/main arm64 libsmartcols1 arm64 2.40.2-11 [135 kB]
Get:11 http://deb.debian.org/debian sid/main arm64 mount arm64 2.40.2-11 [153 kB]
Get:12 http://deb.debian.org/debian sid/main arm64 libuuid1 arm64 2.40.2-11 [35.7 kB]
Get:13 http://deb.debian.org/debian sid/main arm64 util-linux arm64 2.40.2-11 [1170 kB]
Get:14 http://deb.debian.org/debian sid/main arm64 libpcre2-8-0 arm64 10.44-4 [243 kB]
Get:15 http://deb.debian.org/debian sid/main arm64 libselinux1 arm64 3.7-3+b1 [72.1 kB]
Get:16 http://deb.debian.org/debian sid/main arm64 libseccomp2 arm64 2.5.5-1+b3 [46.8 kB]
Get:17 http://deb.debian.org/debian sid/main arm64 apt arm64 2.9.11 [1287 kB]
Get:18 http://deb.debian.org/debian sid/main arm64 libaudit-common all 1:4.0.2-2 [12.7 kB]
Get:19 http://deb.debian.org/debian sid/main arm64 libcap-ng0 arm64 0.8.5-3+b1 [17.0 kB]
Get:20 http://deb.debian.org/debian sid/main arm64 libaudit1 arm64 1:4.0.2-2 [54.2 kB]
Get:21 http://deb.debian.org/debian sid/main arm64 login arm64 1:4.16.0-2+really2.40.2-11 [80.0 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 login.defs all 1:4.16.0-5 [185 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libsemanage2 arm64 3.7-2+b1 [84.5 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 passwd arm64 1:4.16.0-5 [1210 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB]
Get:26 http://deb.debian.org/debian sid/main arm64 libglib2.0-0t64 arm64 2.82.2-3 [1411 kB]
Get:27 http://deb.debian.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB]
Get:28 http://deb.debian.org/debian sid/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB]
debconf: delaying package configuration, since apt-utils is not installed
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| Fetch source files |
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Local sources
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I: NOTICE: Log filtering will replace 'build/flash-bzHgIF/flash-1.2.11' with '<<PKGBUILDDIR>>'
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| Install package build dependencies |
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Setup apt archive
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Merged Build-Depends: debhelper-compat (= 12), zlib1g-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 12), zlib1g-dev, build-essential, fakeroot
dpkg-deb: warning: root directory has unusual owner or group 998:999.
Hint: either pass --root-owner-group, see dpkg-build-api(7) or add an explicit 'Rules-Requires-Root: no' in debian/control.
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-strip-nondeterminism dwz fakeroot g++ g++-14 g++-14-aarch64-linux-gnu
g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
gcc-aarch64-linux-gnu libasan8 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libhwasan0 libisl23 libitm1 liblsan0 libmpc3 libmpfr6
libstdc++-14-dev libtool libtsan2 libubsan1 linux-libc-dev m4 po-debconf
rpcsvc-proto zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-14-locales
cpp-14-doc dh-make gcc-14-doc gcc-multilib manpages-dev flex bison gdb
gcc-doc gdb-aarch64-linux-gnu libc-devtools glibc-doc libstdc++-14-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl
Recommended packages:
manpages manpages-dev libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev build-essential cpp cpp-14
cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu debhelper dh-autoreconf
dh-strip-nondeterminism dwz fakeroot g++ g++-14 g++-14-aarch64-linux-gnu
g++-aarch64-linux-gnu gcc gcc-14 gcc-14-aarch64-linux-gnu
gcc-aarch64-linux-gnu libasan8 libc-dev-bin libc6-dev libcc1-0 libcrypt-dev
libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl
libgcc-14-dev libhwasan0 libisl23 libitm1 liblsan0 libmpc3 libmpfr6
libstdc++-14-dev libtool libtsan2 libubsan1 linux-libc-dev m4 po-debconf
rpcsvc-proto sbuild-build-depends-main-dummy zlib1g-dev
0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded.
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Get:21 http://deb.debian.org/debian sid/main arm64 libasan8 arm64 14.2.0-8 [2579 kB]
Get:22 http://deb.debian.org/debian sid/main arm64 liblsan0 arm64 14.2.0-8 [1161 kB]
Get:23 http://deb.debian.org/debian sid/main arm64 libtsan2 arm64 14.2.0-8 [2386 kB]
Get:24 http://deb.debian.org/debian sid/main arm64 libubsan1 arm64 14.2.0-8 [1039 kB]
Get:25 http://deb.debian.org/debian sid/main arm64 libhwasan0 arm64 14.2.0-8 [1442 kB]
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Get:27 http://deb.debian.org/debian sid/main arm64 gcc-14-aarch64-linux-gnu arm64 14.2.0-8 [17.7 MB]
Get:28 http://deb.debian.org/debian sid/main arm64 gcc-14 arm64 14.2.0-8 [519 kB]
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Get:31 http://deb.debian.org/debian sid/main arm64 libstdc++-14-dev arm64 14.2.0-8 [2267 kB]
Get:32 http://deb.debian.org/debian sid/main arm64 g++-14-aarch64-linux-gnu arm64 14.2.0-8 [10.1 MB]
Get:33 http://deb.debian.org/debian sid/main arm64 g++-14 arm64 14.2.0-8 [20.2 kB]
Get:34 http://deb.debian.org/debian sid/main arm64 g++-aarch64-linux-gnu arm64 4:14.2.0-1 [1200 B]
Get:35 http://deb.debian.org/debian sid/main arm64 g++ arm64 4:14.2.0-1 [1332 B]
Get:36 http://deb.debian.org/debian sid/main arm64 build-essential arm64 12.12 [4624 B]
Get:37 http://deb.debian.org/debian sid/main arm64 libdebhelper-perl all 13.20 [89.7 kB]
Get:38 http://deb.debian.org/debian sid/main arm64 libtool all 2.4.7-8 [517 kB]
Get:39 http://deb.debian.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB]
Get:40 http://deb.debian.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get:41 http://deb.debian.org/debian sid/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get:42 http://deb.debian.org/debian sid/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get:43 http://deb.debian.org/debian sid/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get:44 http://deb.debian.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:45 http://deb.debian.org/debian sid/main arm64 debhelper all 13.20 [915 kB]
Get:46 http://deb.debian.org/debian sid/main arm64 libfakeroot arm64 1.36-1 [29.1 kB]
Get:47 http://deb.debian.org/debian sid/main arm64 fakeroot arm64 1.36-1 [74.4 kB]
Get:48 http://deb.debian.org/debian sid/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (arm64 included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) arm64 (aarch64)
Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.12~1.gbp82cafd g++-14_14.2.0-8 gcc-14_14.2.0-8 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-8 libstdc++6_14.2.0-8 linux-libc-dev_6.11.7-1
Package versions: appstream_1.0.3-1+b1 apt_2.9.11 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.5 bash_5.2.32-1+b2 binutils_2.43.1-5 binutils-aarch64-linux-gnu_2.43.1-5 binutils-common_2.43.1-5 bsdextrautils_2.40.2-11 bsdutils_1:2.40.2-11 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20240203 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-8 cpp-14-aarch64-linux-gnu_14.2.0-8 cpp-aarch64-linux-gnu_4:14.2.0-1 dash_0.5.12-9+b1 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffstat_1.66-1+b1 diffutils_1:3.10-1+b1 dpkg_1.22.12~1.gbp82cafd dpkg-dev_1.22.12~1.gbp82cafd dwz_0.15-1+b1 e2fsprogs_1.47.1-1+b1 fakeroot_1.36-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-8 g++-14-aarch64-linux-gnu_14.2.0-8 g++-aarch64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-8 gcc-14-aarch64-linux-gnu_14.2.0-8 gcc-14-base_14.2.0-8 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libuuid1_2.40.2-11 libvariable-magic-perl_0.64-1+b1 libwww-mechanize-perl_2.19-1 libwww-perl_6.77-1 libwww-robotrules-perl_6.02-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-5+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml2_2.12.7+dfsg+really2.9.14-0.2+b1 libxmlb2_0.3.21-1 libxs-parse-keyword-perl_0.46-1+b1 libxxhash0_0.8.2-2+b2 libyaml-0-2_0.2.5-1+b2 libyaml-libyaml-perl_0.902.0+ds-2+b1 libzstd1_1.5.6+dfsg-1+b1 lintian_2.120.0 linux-libc-dev_6.11.7-1 login_1:4.16.0-2+really2.40.2-11 login.defs_1:4.16.0-5 logsave_1.47.1-1+b1 lzop_1.04-2+b1 m4_1.4.19-4 make_4.3-4.1+b1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 mount_2.40.2-11 ncurses-base_6.5-2 ncurses-bin_6.5-2+b1 netbase_6.4 openssl_3.3.2-2 openssl-provider-legacy_3.3.2-2 passwd_1:4.16.0-5 patch_2.7.6-7+b1 patchutils_0.4.2-1+b1 perl_5.40.0-7 perl-base_5.40.0-7 perl-modules-5.40_5.40.0-7 perl-openssl-defaults_7+b2 plzip_1.11-2 po-debconf_1.0.21+nmu1 readline-common_8.2-5 rpcsvc-proto_1.4.3-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2+b1 sensible-utils_0.0.24 shared-mime-info_2.4-5+b1 sysvinit-utils_3.11-1 t1utils_1.41-4+b1 tar_1.35+dfsg-3+b1 tzdata_2024b-3 ucf_3.0043+nmu1 unzip_6.0-28+b1 util-linux_2.40.2-11 xz-utils_5.6.3-1+b1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: flash
Binary: flash
Architecture: any
Version: 1.2.11-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://ccb.jhu.edu/software/FLASH/
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/flash
Vcs-Git: https://salsa.debian.org/med-team/flash.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 12), zlib1g-dev
Package-List:
flash deb science optional arch=any
Checksums-Sha1:
0df7b2467e5e5d778031ae10dbbd2ed52996a282 48889 flash_1.2.11.orig.tar.gz
651400550e1e960ba61527a835d6d8c0a0479f6d 94964 flash_1.2.11-2.debian.tar.xz
Checksums-Sha256:
685ca6f7fedda07434d8ee03c536f4763385671c4509c5bb48beb3055fd236ac 48889 flash_1.2.11.orig.tar.gz
41ddb26834a506022a938550fa1d49eb0677d238d10de4d7658f23a684888b1c 94964 flash_1.2.11-2.debian.tar.xz
Files:
e4d355023a766afaaab2d62f912b605c 48889 flash_1.2.11.orig.tar.gz
da788ec5eb4063a7d06e64b917d7f296 94964 flash_1.2.11-2.debian.tar.xz
-----BEGIN PGP SIGNATURE-----
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-----END PGP SIGNATURE-----
gpgv: Signature made Wed Jun 17 01:07:59 2020 UTC
gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./flash_1.2.11-2.dsc: no acceptable signature found
dpkg-source: info: extracting flash in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking flash_1.2.11.orig.tar.gz
dpkg-source: info: unpacking flash_1.2.11-2.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=debusine-worker
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SHELL=/bin/sh
USER=debusine-worker
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -b -rfakeroot
dpkg-buildpackage: info: source package flash
dpkg-buildpackage: info: source version 1.2.11-2
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Pranav Ballaney <ballaneypranav@gmail.com>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_auto_clean
make -j8 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f combine_reads.o flash.o iostream.o read_io.o read_queue.o read_util.o util.o flash
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
dh_auto_build
make -j8 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -Wall -std=c99 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o flash.o flash.c
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -Wall -std=c99 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o combine_reads.o combine_reads.c
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -Wall -std=c99 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o iostream.o iostream.c
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -Wall -std=c99 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o read_io.o read_io.c
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -Wall -std=c99 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o read_queue.o read_queue.c
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -Wall -std=c99 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o read_util.o read_util.c
cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O2 -Wall -std=c99 -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o util.o util.c
combine_reads.c: In function ‘combine_reads’:
combine_reads.c:496:12: warning: ‘best_was_outie’ may be used uninitialized [-Wmaybe-uninitialized]
496 | if (!was_outie) {
| ^
combine_reads.c:260:14: note: ‘best_was_outie’ was declared here
260 | bool best_was_outie;
| ^~~~~~~~~~~~~~
cc -Wl,-z,relro -Wl,-z,now flash.o combine_reads.o iostream.o read_io.o read_queue.o read_util.o util.o -lz -lpthread -o flash
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/flash/
dh_install
dh_installdocs
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs NEWS
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installexamples
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz
dh_strip
dh_makeshlibs
dh_shlibdeps
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 from: /lib/ld-linux-aarch64.so.1
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'flash' in '../flash_1.2.11-2_arm64.deb'.
dpkg-deb: building package 'flash-dbgsym' in '../flash-dbgsym_1.2.11-2_arm64.deb'.
dpkg-genbuildinfo --build=binary -O../flash_1.2.11-2_arm64.buildinfo
dpkg-genchanges --build=binary -O../flash_1.2.11-2_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-11-16T03:45:00Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
flash_1.2.11-2_arm64.changes:
-----------------------------
Format: 1.8
Date: Wed, 17 Jun 2020 05:37:47 +0530
Source: flash
Binary: flash flash-dbgsym
Architecture: arm64
Version: 1.2.11-2
Distribution: sid
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Pranav Ballaney <ballaneypranav@gmail.com>
Description:
flash - Fast Length Adjustment of SHort reads
Changes:
flash (1.2.11-2) unstable; urgency=medium
.
* Add test and reference data
* Add autopkgtests
* Install docs
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: flash
Binary: flash flash-dbgsym
Architecture: arm64
Version: 1.2.11-2
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Build-Origin: Debian
Build-Architecture: arm64
Build-Date: Sat, 16 Nov 2024 03:45:00 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
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LANG="en_US.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1592352467"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
flash-dbgsym_1.2.11-2_arm64.deb
-------------------------------
new Debian package, version 2.0.
size 64796 bytes: control archive=532 bytes.
363 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: flash-dbgsym
Source: flash
Version: 1.2.11-2
Auto-Built-Package: debug-symbols
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 83
Depends: flash (= 1.2.11-2)
Section: debug
Priority: optional
Description: debug symbols for flash
Build-Ids: 8f2fc57f60d55f5a25538cb6d5c1cf15929736d5
drwxr-xr-x root/root 0 2020-06-17 00:07 ./
drwxr-xr-x root/root 0 2020-06-17 00:07 ./usr/
drwxr-xr-x root/root 0 2020-06-17 00:07 ./usr/lib/
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drwxr-xr-x root/root 0 2020-06-17 00:07 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-06-17 00:07 ./usr/share/doc/flash-dbgsym -> flash
flash_1.2.11-2_arm64.deb
------------------------
new Debian package, version 2.0.
size 122536 bytes: control archive=1136 bytes.
780 bytes, 17 lines control
975 bytes, 14 lines md5sums
Package: flash
Version: 1.2.11-2
Architecture: arm64
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 703
Depends: libc6 (>= 2.38), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://ccb.jhu.edu/software/FLASH/
Description: Fast Length Adjustment of SHort reads
FLASH (Fast Length Adjustment of SHort reads) is a very fast and
accurate software tool to merge paired-end reads from next-generation
sequencing experiments. FLASH is designed to merge pairs of reads when
the original DNA fragments are shorter than twice the length of reads.
The resulting longer reads can significantly improve genome assemblies.
They can also improve transcriptome assembly when FLASH is used to merge
RNA-seq data.
drwxr-xr-x root/root 0 2020-06-17 00:07 ./
drwxr-xr-x root/root 0 2020-06-17 00:07 ./usr/
drwxr-xr-x root/root 0 2020-06-17 00:07 ./usr/bin/
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drwxr-xr-x root/root 0 2020-06-17 00:07 ./usr/share/
drwxr-xr-x root/root 0 2020-06-17 00:07 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-06-17 00:07 ./usr/share/doc/flash/
-rw-r--r-- root/root 2175 2014-08-04 23:18 ./usr/share/doc/flash/README.gz
-rw-r--r-- root/root 278 2020-06-17 00:07 ./usr/share/doc/flash/README.test
-rw-r--r-- root/root 241 2020-06-17 00:07 ./usr/share/doc/flash/README.test_data
-rw-r--r-- root/root 255 2020-06-17 00:07 ./usr/share/doc/flash/changelog.Debian.gz
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lintian
-------
Setup apt archive
-----------------
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Filtered Build-Depends: lintian
dpkg-deb: warning: root directory has unusual owner or group 998:999.
Hint: either pass --root-owner-group, see dpkg-build-api(7) or add an explicit 'Rules-Requires-Root: no' in debian/control.
dpkg-deb: warning: ignoring 1 warning about the control file(s)
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Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
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-------------------------------------------------------
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Reading package lists...
Building dependency tree...
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sbuild-build-depends-lintian-dummy
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Unpacking sbuild-build-depends-lintian-dummy (0.invalid.0) ...
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W: flash changes: distribution-and-changes-mismatch sid unstable
W: flash source: no-nmu-in-changelog [debian/changelog:1]
W: flash source: source-nmu-has-incorrect-version-number 1.2.11-2 [debian/changelog:1]
I: Lintian run was successful.
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: arm64
Build Type: binary
Build-Space: 2700
Build-Time: 7
Distribution: sid
Host Architecture: arm64
Install-Time: 18
Job: /tmp/debusine-fetch-exec-upload-_4numysi/flash_1.2.11-2.dsc
Lintian: warn
Machine Architecture: arm64
Package: flash
Package-Time: 62
Source-Version: 1.2.11-2
Space: 2700
Status: successful
Version: 1.2.11-2
--------------------------------------------------------------------------------
Finished at 2024-11-16T03:45:00Z
Build needed 00:01:02, 2700k disk space