deb_control_files:
- control
- md5sums
deb_fields:
Architecture: amd64
Depends: python3 (<< 3.14), python3 (>= 3.12~), libboost-python1.83.0 (>= 1.83.0),
libboost-python1.83.0-py312, libc6 (>= 2.32), libfreecontact0t64 (>= 1.0.21),
libgcc-s1 (>= 3.0), libstdc++6 (>= 11)
Description: |-
fast protein contact predictor - binding for Python3
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
.
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
.
This package contains the Python3 binding.
Homepage: https://rostlab.org/owiki/index.php/FreeContact
Installed-Size: '392'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: python3-freecontact
Priority: optional
Section: python
Source: python-freecontact (1.1-8)
Version: 1.1-8+b1
srcpkg_name: python-freecontact
srcpkg_version: 1.1-8