deb_control_files:
- control
- md5sums
deb_fields:
Architecture: all
Description: |-
process genome alignment in the Multiple Alignment Format (example data)
MafFilter applies a series of "filters" to a MAF file, in order to
clean it, extract data and computer statistics while keeping track of
the associated meta-data such as genome coordinates and quality scores.
.
* It can process the alignment to remove low-quality / ambiguous /
masked regions.
* It can export data into a single or multiple alignment file in
format such as Fasta or Clustal.
* It can read annotation data in GFF or GTF format, and extract the
corresponding alignment.
* It can perform sliding windows calculations.
* It can reconstruct phylogeny/genealogy along the genome alignment.
* It can compute population genetics statistics, such as site
frequency spectrum, number of fixed/polymorphic sites, etc.
.
This package provides example data for maffilter.
Enhances: maffilter
Homepage: https://jydu.github.io/maffilter/
Installed-Size: '78842'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Multi-Arch: foreign
Package: maffilter-examples
Priority: optional
Section: science
Source: maffilter
Version: 1.3.1+dfsg-4
srcpkg_name: maffilter
srcpkg_version: 1.3.1+dfsg-4