deb_control_files:
- control
- md5sums
- postinst
- prerm
deb_fields:
Architecture: all
Conflicts: metaphlan2
Depends: python3-biom-format, python3-biopython, python3-dendropy, python3-numpy,
python3-pandas, python3-pysam, python3-requests, python3-scipy, python3:any, metaphlan2-data,
python3-msgpack, bowtie2
Description: |-
Metagenomic Phylogenetic Analysis
MetaPhlAn is a computational tool for profiling the composition of
microbial communities (Bacteria, Archaea and Eukaryotes) from
metagenomic shotgun sequencing data (i.e. not 16S) with species-level.
With the newly added StrainPhlAn module, it is now possible to perform
accurate strain-level microbial profiling.
.
MetaPhlAn relies on ~1.1M unique clade-specific marker genes (the latest
marker information file mpa_v31_CHOCOPhlAn_201901_marker_info.txt.bz2
can be found here) identified from ~100,000 reference genomes (~99,500
bacterial and archaeal and ~500 eukaryotic), allowing:
.
* unambiguous taxonomic assignments;
* accurate estimation of organismal relative abundance;
* species-level resolution for bacteria, archaea, eukaryotes and
viruses;
* strain identification and tracking
* orders of magnitude speedups compared to existing methods.
* metagenomic strain-level population genomics
Homepage: https://github.com/biobakery/MetaPhlAn
Installed-Size: '6184'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: metaphlan
Priority: optional
Provides: metaphlan2
Replaces: metaphlan2
Section: science
Version: 4.0.4-1
srcpkg_name: metaphlan
srcpkg_version: 4.0.4-1