deb_control_files:
- control
- md5sums
- postinst
- prerm
deb_fields:
Architecture: all
Depends: python3:any, python3-biopython, python3-cyvcf2, python3-joblib, python3-logbook,
python3-matplotlib, python3-psutil, python3-pysam, python3-requests, python3-scipy,
python3-six, python3-tornado
Description: |-
library for analysing high-throughput sequencing data
This package installs the Python 3 libraries of the bcbio-nextgen
toolkit implementing best-practice pipelines for fully automated high
throughput sequencing analysis.
.
A high-level configuration file specifies inputs and analysis parameters
to drive a parallel pipeline that handles distributed execution,
idempotent processing restarts and safe transactional steps. The project
contributes a shared community resource that handles the data processing
component of sequencing analysis, providing researchers with more time
to focus on the downstream biology.
Homepage: https://github.com/bcbio/bcbio-nextgen
Installed-Size: '4871'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: python3-bcbio
Priority: optional
Recommends: cnvkit, gsort, libfreetype6, libhts-dev, lumpy-sv, mosdepth, multiqc,
python3-arrow, python3-geneimpacts, python3-h5py, python3-pyvcf, python3-seqcluster,
python3-statsmodels, python3-tabulate, r-other-wasabi, r-bioc-purecn, r-bioc-titancna,
seqan-apps, snpeff, vcfanno, vt
Section: contrib/python
Source: bcbio
Suggests: bcbio-doc, python3-bioblend, python3-dnapilib, python3-msgpack
Version: 1.2.9-2
srcpkg_name: bcbio
srcpkg_version: 1.2.9-2