deb_control_files:
- control
- md5sums
- postinst
- prerm
deb_fields:
Architecture: all
Depends: python3-biopython, python3-matplotlib, python3-numpy, python3-pandas, python3-scipy,
python3-sklearn, python3:any, python3-tk
Description: |-
QC and genome browser plotting Oxford Nanopore and PacBio long reads
Pauvre is a plotting package designed for nanopore and PacBio long reads.
.
This package currently hosts four scripts for plotting and/or printing stats.
.
pauvre marginplot
Takes a fastq file as input and outputs a marginal histogram with a
heatmap.
pauvre stats
Takes a fastq file as input and prints out a table of stats, including
how many basepairs/reads there are for a length/mean quality cutoff.
This is also automagically called when using pauvre marginplot
pauvre redwood
Method of representing circular genomes. A redwood plot contains long
reads as "rings" on the inside, a gene annotation "cambrium/phloem",
and a RNAseq "bark". The input is .bam files for the long reads and
RNAseq data, and a .gff file for the annotation.
pauvre synteny
Makes a synteny plot of circular genomes. Finds the most parsimonius
rotation to display the synteny of all the input genomes with the
fewest crossings-over. Input is one .gff file per circular genome
and one directory of gene alignments.
Homepage: https://github.com/conchoecia/pauvre
Installed-Size: '278'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: python3-pauvre
Priority: optional
Section: python
Source: python-pauvre
Version: 0.2.3-2
srcpkg_name: python-pauvre
srcpkg_version: 0.2.3-2