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R

randNumGenerator - Static variable in class artificialFastqGenerator.ArtificialFastqGenerationUtils
 
Read - Class in artificialFastqGenerator
An instance of this class corresponds to a read in an artificial fastq file.
Read(ArrayList<Nucleobase>, long, Read, boolean, char[], char[], int, int) - Constructor for class artificialFastqGenerator.Read
Initialise a new Read object.
readLength - Static variable in class artificialFastqGenerator.Main
 
readsContainingNfilter - Static variable in class artificialFastqGenerator.Main
 
referenceGenomePath - Static variable in class artificialFastqGenerator.Main
 
resetFieldsForNewChromosome() - Method in class artificialFastqGenerator.NucleobaseAndReadFactory
Reset fields ready to process a new chromosome.
resetNumBaseCallErrors() - Method in class artificialFastqGenerator.QualityScoreAndErrorGenerator
Reset the number of simulated base call errors to 0.
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