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A

a - Variable in class melting.ionCorrection.magnesiumCorrections.Owczarzy08MagnesiumCorrection
 
addData(HashMap<String, Thermodynamics>) - Method in class melting.DataCollect
add all of the mappings from the specified HashMap to the data of DataCollect.
addLayoutComponent(Component, Object) - Method in class meltinggui.MeltingLayout
Adds a component to the layout, specifying that it belongs either to the label group or to the input group, according to the constraint given.
addLayoutComponent(String, Component) - Method in class meltinggui.MeltingLayout
Deprecated.
Only here because the interface demands it. Replaced by addLayoutComponent(Component, Object).
addObserver(Observer) - Method in class meltinggui.frames.MeltingFrame
Adds an observer to the melting frame observable.
addObserver(Observer) - Method in class meltinggui.frames.OuterFrame
Adds an observer to the melting frame.
addResult(double, double) - Method in class melting.Environment
increments the ThermoResult enthalpy and ThermoResult entropy of Environment.
aFormula - Static variable in class melting.ionCorrection.magnesiumCorrections.Tan06MagnesiumCorrection
 
aFormula - Static variable in class melting.ionCorrection.magnesiumCorrections.Tan07MagnesiumCorrection
 
Ahsen01 - Class in melting.approximativeMethods
This class represents the approxiamtive model ahs01.
Ahsen01() - Constructor for class melting.approximativeMethods.Ahsen01
 
Ahsen01_NaEquivalent - Class in melting.ionCorrection.sodiumEquivalence
This class represents the model for a sodium equivalence ahs01.
Ahsen01_NaEquivalent() - Constructor for class melting.ionCorrection.sodiumEquivalence.Ahsen01_NaEquivalent
 
Ahsen01DMSOCorrection - Class in melting.otherCorrections.dmsoCorrections
This class represents the DMSO correction model ahs01.
Ahsen01DMSOCorrection() - Constructor for class melting.otherCorrections.dmsoCorrections.Ahsen01DMSOCorrection
 
Ahsen01SodiumCorrection - Class in melting.ionCorrection.sodiumCorrections
This class represents the sodium correction model ahs01.
Ahsen01SodiumCorrection() - Constructor for class melting.ionCorrection.sodiumCorrections.Ahsen01SodiumCorrection
 
AllawiSantalucia97 - Class in melting.patternModels.cricksPair
This class represents the nearest neighbor model all97.
AllawiSantalucia97() - Constructor for class melting.patternModels.cricksPair.AllawiSantalucia97
 
AllawiSantaluciaPeyret97_98_99mm - Class in melting.patternModels.singleMismatch
This class represents the single mismatch model allsanpey.
AllawiSantaluciaPeyret97_98_99mm() - Constructor for class melting.patternModels.singleMismatch.AllawiSantaluciaPeyret97_98_99mm
 
AllawiSantaluciaPeyret97_98_99tanmm - Class in melting.patternModels.tandemMismatches
This class represents the tandem mismatches model allsanpey.
AllawiSantaluciaPeyret97_98_99tanmm() - Constructor for class melting.patternModels.tandemMismatches.AllawiSantaluciaPeyret97_98_99tanmm
 
ApproximativeMode - Class in melting.approximativeMethods
This class represents the approximative model.
ApproximativeMode() - Constructor for class melting.approximativeMethods.ApproximativeMode
 
approximativeMode - Static variable in class melting.configuration.OptionManagement
Option name for the choice of approximative computation method.
ArgsMessage - Class in meltinggui
A message that GUI components can send the main program, containing MELTING arguments that it can use to get results.
ArgsMessage(ArgsMessage.ArgumentType, String) - Constructor for class meltinggui.ArgsMessage
Fills in the argument type and command-line arguments.
ArgsMessage.ArgumentType - Enum in meltinggui
The different possible types of arguments that can be sent.
Asanuma05Azobenzene - Class in melting.patternModels.specificAcids
This class represents the azobenzene (X_C or X_T) model asa05.
Asanuma05Azobenzene() - Constructor for class melting.patternModels.specificAcids.Asanuma05Azobenzene
 
azobenzeneMethod - Static variable in class melting.configuration.OptionManagement
Option name for the choice of azobenzene computation method.
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