Methods
addMassShift(position, massShiftList, mass)
Add mass shifts to massShift list
Parameters:
Name | Type | Description |
---|---|---|
position |
int | position of the mass list |
massShiftList |
Array | Contains the list of all the mass shifts |
mass |
Float | Mass shift to be added to the list |
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getFixedPTMMassList(massShiftList, prsm)
Get all the Fixed Ptms and add the corresponding mass shits to mass shift list
Parameters:
Name | Type | Description |
---|---|---|
massShiftList |
Array | Contains all the mass shifts |
prsm |
Object | Contains the data of the prsm(Attribute inside prsm_data global variable from data file) |
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getIonTypeMass(ionType)
Check for ionType and return the corresponding mass shift value
Parameters:
Name | Type | Description |
---|---|---|
ionType |
String | String with Corresponding iontype |
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getMassofFixedPtm(abbrevation)
Returns Fixed Mass for certain abbrivation
Parameters:
Name | Type | Description |
---|---|---|
abbrevation |
String | Contains abbrevation to get corresponding fixed mass |
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getPrefixMassList(sequence, massShiftList, ionType_massShift)
Calculate and generate Prefix mass list
Parameters:
Name | Type | Description |
---|---|---|
sequence |
String | Contains sequence of the protein |
massShiftList |
Array | Contains the Mass shift which are to be added in the corresponding positions |
ionType_massShift |
Float | Contains the mass based on the ion Type |
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getSequence(prsm_data)
Get the sequence from the prsm_data global variable from data file
Parameters:
Name | Type | Description |
---|---|---|
prsm_data |
Object | This is a global object from data file which contains all the prsm information |
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getSuffixMassList(sequence, massShiftList, ionType_massShift)
Generate Suffix mass list
Parameters:
Name | Type | Description |
---|---|---|
sequence |
String | Contains sequence of the protein |
massShiftList |
Array | Contains the Mass shift which are to be added in the corresponding positions |
ionType_massShift |
Float | Contains the mass based on the ion Type |
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getUnknownMassList()
Get unknow mass list
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