- LABEL_GROUP - Static variable in class meltinggui.MeltingLayout
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Component group type: label group.
- layoutContainer(Container) - Method in class meltinggui.MeltingLayout
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Lays out the container argument using this MELTING layout.
- legalInformation - Static variable in class melting.configuration.OptionManagement
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Option name for the melting legal information.
- loadData(HashMap<String, String>) - Method in interface melting.methodInterfaces.PatternComputationMethod
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To load the necessary thermodynamic parameters of the implemented class.
- loadData(HashMap<String, String>) - Method in class melting.patternModels.InternalLoops.Santalucia04InternalLoop
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- loadData(HashMap<String, String>) - Method in class melting.patternModels.PatternComputation
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- loadData(HashMap<String, String>) - Method in class melting.patternModels.secondDanglingEnds.SecondDanglingEndMethod
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- loadData(HashMap<String, String>) - Method in class melting.patternModels.singleBulge.Santalucia04SingleBulgeLoop
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- loadData(HashMap<String, String>) - Method in class melting.patternModels.singleBulge.Turner99_06SingleBulgeLoop
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- loadData(HashMap<String, String>) - Method in class melting.patternModels.specificAcids.McTigue04LockedAcid
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- loadData(HashMap<String, String>) - Method in class melting.patternModels.specificAcids.Owczarzy11SingleMismatchLockedAcid
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- loadData(HashMap<String, String>) - Method in class melting.patternModels.specificAcids.Owczarzy11TandemLockedAcid
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- loadData(HashMap<String, String>) - Method in class melting.patternModels.specificAcids.Sugimoto01Hydroxyadenine
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- loadData(HashMap<String, String>) - Method in class melting.patternModels.tandemMismatches.AllawiSantaluciaPeyret97_98_99tanmm
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- loadFile(String, DataCollect) - Method in interface melting.methodInterfaces.PatternComputationMethod
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To load the thermodynamic parameters from the file "name" and stock them in the map of a DataCollect object.
- loadFile(String, DataCollect) - Method in class melting.patternModels.PatternComputation
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- loadSequencesTest(String) - Static method in class examples.MainTest
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loads the data from the file and stocks them in a Properties object.
- lockedAcidMethod - Static variable in class melting.configuration.OptionManagement
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Option name for the choice of locked nucleic acid computation method.
- LockedAcidNNMethod - Class in melting.patternModels.specificAcids
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This class represents the locked nucleic acid (AL, GL, CL or TL) model owc11.
- LockedAcidNNMethod() - Constructor for class melting.patternModels.specificAcids.LockedAcidNNMethod
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- lockedAcidSingleMismatchMethod - Static variable in class melting.configuration.OptionManagement
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Option name for the choice of locked nucleic acid with single mismatch computation method.
- logError(String) - Static method in class melting.configuration.OptionManagement
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Logs an error to the melting logger.
- logError(String, Throwable) - Static method in class melting.configuration.OptionManagement
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Logs an error message to the melting logger, along with the error itself.
- logException(Exception) - Method in class meltinggui.frames.ErrorFrame
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Logs an exception into the exception log text area.
- logException(Exception) - Method in class meltinggui.frames.OuterFrame
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Logs an exception on to the error frame.
- logFileName(String) - Static method in class melting.configuration.OptionManagement
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Logs a file name to the melting logger.
- logInfo(String) - Static method in class melting.configuration.OptionManagement
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Logs information to the melting logger.
- logMessage(String) - Static method in class melting.configuration.OptionManagement
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Logs a message to the melting logger.
- logMethodName(String) - Static method in class melting.configuration.OptionManagement
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Logs the name of a method to the melting logger.
- logTemperatureEquation(String) - Static method in class melting.configuration.OptionManagement
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Logs a temperature equation to the melting logger.
- logWarning(String) - Static method in class melting.configuration.OptionManagement
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Logs a warning to the melting logger.
- longBulgeLoopMethod - Static variable in class melting.configuration.OptionManagement
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Option name for the choice of long bulge loop computation method.
- longDanglingEndMethod - Static variable in class melting.configuration.OptionManagement
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Option name for the choice of long dangling end computation method.