FastQCFastQC Report
Tue 3 May 2016
SRR3192398_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192398_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68765938
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG2837110.41257490009079784No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG2672540.38864299357045057No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA1993400.28988188890843025No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA1892970.2752772746297738No Hit
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT1820520.2647415352641594No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT1719260.2500162216939439No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG1315660.1913243734128952No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG1250530.18185311454633252No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG1214060.17654961675939038No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT1059330.1540486512377683No Hit
GTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAG911670.13257581100689705No Hit
GTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAG866600.12602169405440236No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC857660.12472163180556048No Hit
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGAT789100.1147515794811088No Hit
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGAT710470.10331713936629497No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT700630.10188619836756971No Hit
CAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAG698940.10164043715945531No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGATC196600.052.303072
CGGTGGC1168400.048.5791131
GGGCGAT211950.048.5595051
GCGGTGG599450.044.033311
GCGATCT254250.040.665243
CGATCTG275400.038.0676464
GGTGGCG1536150.036.781072
GGCGCGT1632350.034.4981355
TGGCGCG1635750.034.4371764
GTGGCGC1668850.033.7772833
GCGCGTG1742350.032.303126
CGCGTGC1859200.030.237497
TCACCCG249000.029.4567173
ACCCGGC252650.029.382415
GCGTGCC1961400.028.7338228
CGGCCCG266900.027.167468
CGTGCCT2093950.026.9912349
CACCCGG292950.025.99784
CCTGTAG2303300.021.05833612-13
TGTAGTC2388750.020.20220614-15