FastQCFastQC Report
Mon 2 May 2016
SRR3192400_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192400_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95791942
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1851890.19332419422084585No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1686740.1760837044101267No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1210910.12641042395820726No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC962120.10043851078830826No Hit

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA1180000.049.4709781
GTATCAA1950200.037.606921
GAGTACA2315100.034.891271
GTACATG3612700.033.4880941
TACATGG3681200.032.368642
AGTACAT2443250.032.1875042
CAACGCA2323000.030.8214055
ATCAACG2345500.030.398383
ACATGGG3918550.029.84543
CTAGTAC399000.029.2228953
TCAACGC2473400.029.1484994
AACGCAG2521000.028.6472726
CTAACGC156050.028.6388663
TATCAAC2561650.028.2620242
TAACGCC155150.028.1709694
CATGGGG3152050.027.3788764
CTGTGCG423300.026.9608769
TCTAACG169450.025.9324422
TAGTACT522350.024.3668824
CCTAGTA485100.023.7470342