FastQCFastQC Report
Mon 2 May 2016
SRR3192397_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192397_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92494632
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG16636641.7986600562938615No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG7723350.835005214140427No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA5526320.5974746729085856No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT3680110.39787281925723No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT3354880.3627107787184882No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA2657150.2872761307921091No Hit
GCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGC1982940.21438433313621919No Hit
CTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCTGTAGTGCGCT1909110.20640224829479834No Hit
GTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAG1768970.1912510987664668No Hit
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT1735780.18766278241963275No Hit
CTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCT1714880.1854031918306351No Hit
CTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTTCTGGGCTG1592660.1721894520322001No Hit
GGCTGGAGGATCGCTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGC1443620.1560760845018552No Hit
CGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGG1272900.13761879716435868No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCT1265670.13683713018070065No Hit
ACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTTCTGGGCT1206420.13043135303246572No Hit
CTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTTCTGGGCTG1160700.12548836347605555No Hit
CAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTG1138200.12305578987546002No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA1050730.11359902486016701No Hit
CCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTT1046250.11311467242769288No Hit
TGAGGCTGGAGGATCGCTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTA932400.10080585000867943No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTGGC3494850.071.837031
GGGCGAT502200.066.510961
TGGCGCG4065950.061.5046924
GGCGATC544800.061.3982
GGCGCGT4128350.060.5750275
GTGGCGC4187500.059.7602423
GGTGGCG4238500.059.177152
GCGCGTG4556150.055.0318156
CGCGTGC4669900.053.6411257
GCGTGCC4722200.053.1737678
CGTGCCT4792550.052.430639
GCGATCT721350.046.797263
CGATCTG840300.040.1614954
TAGTCCC4942050.033.8579116-17
TGTAGTC5010250.033.51652514-15
CCTGTAG5059750.033.33855412-13
TGCCTGT5456800.030.92414710-11
GTCCCAG5716100.029.393118-19
TACTCGG6088450.027.70665626-27
GTAGTCC4928950.026.53200516-17