Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192658_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 97548052 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGGTTCATC | 98430 | 0.10090411646559584 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTACGAA | 32055 | 0.0 | 23.630056 | 1 |
TAGATCG | 16505 | 0.0 | 21.66702 | 8 |
TACCGCG | 21970 | 0.0 | 17.498415 | 1 |
TGCGTCG | 50375 | 0.0 | 16.922682 | 9 |
CGGGTGT | 33130 | 0.0 | 16.544304 | 1 |
ACGAACG | 33780 | 0.0 | 16.149912 | 28-29 |
GTGCGTC | 57165 | 0.0 | 15.685254 | 8 |
GCGGGTT | 20915 | 0.0 | 15.105241 | 1 |
ACGTACG | 14285 | 0.0 | 15.010604 | 36-37 |
TACGAAT | 50865 | 0.0 | 14.97545 | 2 |
CGGTATA | 17395 | 0.0 | 14.934225 | 4 |
CGTACGA | 15925 | 0.0 | 14.717309 | 36-37 |
TACGTAC | 16250 | 0.0 | 14.583674 | 34-35 |
GCGGTGT | 56575 | 0.0 | 14.581108 | 2 |
TTTAGCG | 37505 | 0.0 | 14.536922 | 10-11 |
GTCCGAA | 13990 | 0.0 | 14.4540205 | 1 |
ACTATCG | 22760 | 0.0 | 14.279476 | 58-59 |
CTATACC | 45830 | 0.0 | 13.8973675 | 94-95 |
GAACGTG | 40430 | 0.0 | 13.808412 | 30-31 |
CCGAACG | 11940 | 0.0 | 13.523664 | 3 |