Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192398_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 68765938 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG | 283711 | 0.41257490009079784 | No Hit |
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG | 267254 | 0.38864299357045057 | No Hit |
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA | 199340 | 0.28988188890843025 | No Hit |
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA | 189297 | 0.2752772746297738 | No Hit |
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT | 182052 | 0.2647415352641594 | No Hit |
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT | 171926 | 0.2500162216939439 | No Hit |
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG | 131566 | 0.1913243734128952 | No Hit |
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG | 125053 | 0.18185311454633252 | No Hit |
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG | 121406 | 0.17654961675939038 | No Hit |
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT | 105933 | 0.1540486512377683 | No Hit |
GTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAG | 91167 | 0.13257581100689705 | No Hit |
GTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAG | 86660 | 0.12602169405440236 | No Hit |
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC | 85766 | 0.12472163180556048 | No Hit |
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGAT | 78910 | 0.1147515794811088 | No Hit |
GTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGAT | 71047 | 0.10331713936629497 | No Hit |
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT | 70063 | 0.10188619836756971 | No Hit |
CAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAG | 69894 | 0.10164043715945531 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGCGATC | 19660 | 0.0 | 52.30307 | 2 |
CGGTGGC | 116840 | 0.0 | 48.579113 | 1 |
GGGCGAT | 21195 | 0.0 | 48.559505 | 1 |
GCGGTGG | 59945 | 0.0 | 44.03331 | 1 |
GCGATCT | 25425 | 0.0 | 40.66524 | 3 |
CGATCTG | 27540 | 0.0 | 38.067646 | 4 |
GGTGGCG | 153615 | 0.0 | 36.78107 | 2 |
GGCGCGT | 163235 | 0.0 | 34.498135 | 5 |
TGGCGCG | 163575 | 0.0 | 34.437176 | 4 |
GTGGCGC | 166885 | 0.0 | 33.777283 | 3 |
GCGCGTG | 174235 | 0.0 | 32.30312 | 6 |
CGCGTGC | 185920 | 0.0 | 30.23749 | 7 |
TCACCCG | 24900 | 0.0 | 29.456717 | 3 |
ACCCGGC | 25265 | 0.0 | 29.38241 | 5 |
GCGTGCC | 196140 | 0.0 | 28.733822 | 8 |
CGGCCCG | 26690 | 0.0 | 27.16746 | 8 |
CGTGCCT | 209395 | 0.0 | 26.991234 | 9 |
CACCCGG | 29295 | 0.0 | 25.9978 | 4 |
CCTGTAG | 230330 | 0.0 | 21.058336 | 12-13 |
TGTAGTC | 238875 | 0.0 | 20.202206 | 14-15 |