Uses of Class
org.forester.ws.seqdb.UniProtTaxonomy
Packages that use UniProtTaxonomy
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Uses of UniProtTaxonomy in org.forester.analysis
Methods in org.forester.analysis that return UniProtTaxonomyModifier and TypeMethodDescriptionstatic final UniProtTaxonomy
TaxonomyDataManager.obtainUniProtTaxonomy
(String simple_name, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt) static final UniProtTaxonomy
TaxonomyDataManager.obtainUniProtTaxonomy
(Taxonomy tax, Object query, org.forester.analysis.TaxonomyDataManager.QUERY_TYPE qt) -
Uses of UniProtTaxonomy in org.forester.ws.seqdb
Methods in org.forester.ws.seqdb that return UniProtTaxonomyModifier and TypeMethodDescriptionUniProtTaxonomy.copy()
Creates deep copy for all fields, except lineage.static final UniProtTaxonomy
UniProtTaxonomy.createSpecialFromScientificName
(String sn) Methods in org.forester.ws.seqdb that return types with arguments of type UniProtTaxonomyModifier and TypeMethodDescriptionstatic List<UniProtTaxonomy>
SequenceDbWsTools.getTaxonomiesFromCommonNameStrict
(String cn, int max_taxonomies_return) static List<UniProtTaxonomy>
SequenceDbWsTools.getTaxonomiesFromId
(String id, int max_taxonomies_return) static List<UniProtTaxonomy>
SequenceDbWsTools.getTaxonomiesFromScientificNameStrict
(String sn, int max_taxonomies_return) Does not return "sub-types".static List<UniProtTaxonomy>
SequenceDbWsTools.getTaxonomiesFromTaxonomyCode
(String code, int max_taxonomies_return)