Package pal.tree
Interface ParameterizedTree
- All Superinterfaces:
IdGroup
,Parameterized
,Serializable
,Tree
,Units
,UnitsProvider
- All Known Implementing Classes:
ClockTree
,DemographicClockTree
,LogParameterizedTree
,MutationRateModelTree
,UnconstrainedTree
abstract base class for a tree with an Parameterized interface
- Version:
- $Id: ParameterizedTree.java,v 1.21 2003/06/04 03:17:52 matt Exp $
- Author:
- Alexei Drummond, Korbinian Strimmer, Matthew Goode
-
Nested Class Summary
Nested ClassesModifier and TypeInterfaceDescriptionstatic interface
Factory interfacestatic class
For parameterisations that work by adjusting a base tree (that is, they aren't really tree's themselves...)Nested classes/interfaces inherited from interface pal.misc.IdGroup
IdGroup.Utils
Nested classes/interfaces inherited from interface pal.misc.Parameterized
Parameterized.Null, Parameterized.ParameterizedBase, Parameterized.ParameterizedUser, Parameterized.Utils
Nested classes/interfaces inherited from interface pal.tree.Tree
Tree.TreeBase
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Field Summary
Fields inherited from interface pal.misc.Units
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS
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Method Summary
Modifier and TypeMethodDescriptionMethods inherited from interface pal.misc.IdGroup
getIdCount, getIdentifier, setIdentifier, whichIdNumber
Methods inherited from interface pal.misc.Parameterized
getDefaultValue, getLowerLimit, getNumParameters, getParameter, getUpperLimit, setParameter, setParameterSE
Methods inherited from interface pal.tree.Tree
createNodeList, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getInternalNode, getInternalNodeCount, getRoot, getUnits, setAttribute, setRoot
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Method Details
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getOrthogonalHints
OrthogonalHints getOrthogonalHints() -
getParameterizationInfo
String getParameterizationInfo()
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