Uses of Interface
pal.alignment.AlignmentGenerator
Packages that use AlignmentGenerator
Package
Description
Classes dealing with sequence alignments, including methods for reading
and printing in several possible formats, as well as rearranging and
concatenating.
Classes with useful for statistics (normal distribution,
Gamma distribution, chi-square distribution, exponential distribution,
likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.)
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Uses of AlignmentGenerator in pal.alignment
Methods in pal.alignment that return AlignmentGeneratorModifier and TypeMethodDescriptionstatic final AlignmentGenerator
AlignmentGenerator.Utils.createBootstrapGenerator
(Alignment baseAlignment) -
Uses of AlignmentGenerator in pal.statistics
Constructors in pal.statistics with parameters of type AlignmentGeneratorModifierConstructorDescriptionGeneralTopologyPool
(Tree[] topologies, LikelihoodEvaluator baseCalculator, ReplicateLikelihoodEvaluator replicateCalculator, Alignment baseAlignment, AlignmentGenerator replicateGenerator)