Uses of Interface
pal.math.OrderEnumerator
Packages that use OrderEnumerator
Package
Description
Classes for math stuff such as optimisation, numerical derivatives, matrix exponentials,
random numbers, special function etc.
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
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Uses of OrderEnumerator in pal.math
Methods in pal.math that return OrderEnumeratorModifier and TypeMethodDescriptionOrderEnumerator.OEFactory.createOrderEnumerator
(int size) For generating an ordering from 0..size-1.static final OrderEnumerator
OrderEnumerator.Utils.getAdjusted
(OrderEnumerator toAdjust, int adjustmentFactor) static final OrderEnumerator
OrderEnumerator.Utils.getAlternating
(OrderEnumerator primary, OrderEnumerator secondary) static final OrderEnumerator
OrderEnumerator.Utils.getBiasAlternating
(OrderEnumerator primary, OrderEnumerator secondary) static final OrderEnumerator
OrderEnumerator.Utils.getConstant
(int index) static final OrderEnumerator
OrderEnumerator.Utils.getOrdered
(int size) static final OrderEnumerator
OrderEnumerator.Utils.getRestricted
(OrderEnumerator toRestrict, int minimum, int range) static final OrderEnumerator
OrderEnumerator.Utils.getShuffled
(int size) OrthogonalHints.getSuggestedOrdering
(OrderEnumerator defaultOrdering) If there is a "best" ordering to use it can be specified here, if not should return nullstatic final OrderEnumerator
OrderEnumerator.Utils.getZero()
Methods in pal.math with parameters of type OrderEnumeratorModifier and TypeMethodDescriptionstatic final OrderEnumerator
OrderEnumerator.Utils.getAdjusted
(OrderEnumerator toAdjust, int adjustmentFactor) static final OrderEnumerator
OrderEnumerator.Utils.getAlternating
(OrderEnumerator primary, OrderEnumerator secondary) static final OrderEnumerator
OrderEnumerator.Utils.getBiasAlternating
(OrderEnumerator primary, OrderEnumerator secondary) static final OrderEnumerator
OrderEnumerator.Utils.getRestricted
(OrderEnumerator toRestrict, int minimum, int range) OrthogonalHints.getSuggestedOrdering
(OrderEnumerator defaultOrdering) If there is a "best" ordering to use it can be specified here, if not should return null -
Uses of OrderEnumerator in pal.tree
Methods in pal.tree that return OrderEnumeratorModifier and TypeMethodDescriptionMutationRateModelTree.getSuggestedOrdering
(OrderEnumerator defaultOrdering) Methods in pal.tree with parameters of type OrderEnumeratorModifier and TypeMethodDescriptionMutationRateModelTree.getSuggestedOrdering
(OrderEnumerator defaultOrdering)