Package pal.substmodel
Interface TransitionProbability
- All Superinterfaces:
Cloneable
,Serializable
For objects that represent a source of transition probabilities
TransitionProbability.java,v 1.3 2000/08/08 22:58:29 alexi Exp $
- Author:
- Matthew Goode
-
Method Summary
Modifier and TypeMethodDescriptionint
double
getTransitionProbability
(int startState, int endState) Returns the transition probability for changing from startState into endStatevoid
setDistance
(double arc) compute transition probabilities for a expected distance using the prespecified rate matrixvoid
setTime
(double start, double end) compute transition probabilities for a expected time span using the prespecified rate matrix
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Method Details
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setDistance
void setDistance(double arc) compute transition probabilities for a expected distance using the prespecified rate matrix- Parameters:
arc
- expected distance
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setTime
void setTime(double start, double end) compute transition probabilities for a expected time span using the prespecified rate matrix- Parameters:
start
- start timeend
- end time
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getTransitionProbability
double getTransitionProbability(int startState, int endState) Returns the transition probability for changing from startState into endState- Parameters:
startState
- - the starting stateendState
- - the resulting state
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getDimension
int getDimension()
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