Package pal.util
Interface XMLConstants
- All Known Implementing Classes:
BLOSUM62
,CPREV
,Dayhoff
,ElementFactory
,ElementParser
,F81
,F84
,GTR
,HKY
,JTT
,MTREV24
,TN
,TwoStateModel
,VT
,WAG
,YangCodonModel
public interface XMLConstants
constants (strings and numbers) relating to reading and writing XML.
These constants should avoid the use of < and > and other
special XML characters as much as possible.
- Version:
- $Id: XMLConstants.java,v 1.11 2002/06/03 09:18:04 alexi Exp $
- Author:
- Alexei Drummond
-
Field Summary
FieldsModifier and TypeFieldDescriptionstatic final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
constant population demographic model typestatic final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final int
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
static final String
-
Field Details
-
SPACES_PER_LEVEL
static final int SPACES_PER_LEVEL- See Also:
-
DEMOGRAPHIC_MODEL
- See Also:
-
MUTATION_RATE_MODEL
- See Also:
-
RATE_MATRIX
- See Also:
-
TREE
- See Also:
-
FREQUENCIES
- See Also:
-
PARAMETER
- See Also:
-
NODE
- See Also:
-
EDGE
- See Also:
-
ALIGNMENT
- See Also:
-
SEQUENCE
- See Also:
-
TIME
- See Also:
-
TIME_DATA
- See Also:
-
ATTRIBUTE
- See Also:
-
TYPE
- See Also:
-
NAME
- See Also:
-
VALUE
- See Also:
-
UNITS
- See Also:
-
MODEL
- See Also:
-
ID
- See Also:
-
HEIGHT
- See Also:
-
LENGTH
- See Also:
-
DATA_TYPE
- See Also:
-
DATA_TYPE_ID
- See Also:
-
DIRECTION
- See Also:
-
ORIGIN
- See Also:
-
MISSING
- See Also:
-
COALESCENT
- See Also:
-
CONSTANT_POPULATION
constant population demographic model type- See Also:
-
EXPONENTIAL_GROWTH
- See Also:
-
CONST_EXP_GROWTH
- See Also:
-
EXPANDING_POPULATION
- See Also:
-
CONST_EXP_CONST
- See Also:
-
CONSTANT_MUTATION_RATE
- See Also:
-
STEPPED_MUTATION_RATE
- See Also:
-
UNIFORM
- See Also:
-
MUTATION_RATE
- See Also:
-
ANCESTRAL_MU_RATE
- See Also:
-
MU_STEP_TIME
- See Also:
-
POPULATION_SIZE
- See Also:
-
GROWTH_RATE
- See Also:
-
ALPHA
- See Also:
-
ANCESTRAL_POP_SIZE
- See Also:
-
CURRENT_POP_SIZE_DURATION
- See Also:
-
GROWTH_PHASE_DURATION
- See Also:
-
GENERATIONS
- See Also:
-
DAYS
- See Also:
-
MONTHS
- See Also:
-
YEARS
- See Also:
-
MUTATIONS
- See Also:
-
TWO_STATE
- See Also:
-
JC
- See Also:
-
F81
- See Also:
-
F84
- See Also:
-
HKY
- See Also:
-
GTR
- See Also:
-
TN
- See Also:
-
WAG
- See Also:
-
JTT
- See Also:
-
VT
- See Also:
-
CPREV
- See Also:
-
BLOSUM62
- See Also:
-
MTREV24
- See Also:
-
DAYHOFF
- See Also:
-
YANG_CODON_MODEL
- See Also:
-
A_TO_C
- See Also:
-
A_TO_G
- See Also:
-
A_TO_T
- See Also:
-
C_TO_G
- See Also:
-
C_TO_T
- See Also:
-
G_TO_T
- See Also:
-
KAPPA
- See Also:
-
OMEGA
- See Also:
-
PYRIMIDINE_PURINE_RATIO
- See Also:
-
TS_TV_RATIO
- See Also:
-
UNKNOWN
- See Also:
-
BACKWARDS
- See Also:
-
UNIFORM_RATE_DISTRIBUTION
- See Also:
-
GAMMA_DISTRIBUTION
- See Also:
-
RATE_DISTRIBUTION
- See Also:
-
NUMBER_CATEGORIES
- See Also:
-
GAMMA_ALPHA
- See Also:
-