Package pal.mep

Class DeltaModel.Utils

java.lang.Object
pal.mep.DeltaModel.Utils
Enclosing interface:
DeltaModel

public static final class DeltaModel.Utils extends Object
  • Constructor Details

    • Utils

      public Utils()
  • Method Details

    • getMutationRateModelBased

      public static final DeltaModel getMutationRateModelBased(MutationRateModel.Factory mepFactory)
      For interfacing with time based mutation rate models
    • getUntimedBased

      public static final DeltaModel getUntimedBased()
      For serial sampled analysis when no time information is available.
    • getUntimedBased

      public static final DeltaModel getUntimedBased(double[] initalDeltas)
      For serial sampled analysis when no time information is available.
      Parameters:
      initialDeltas - , if not of required length (for given tocd) uses subset (or sets remainder to zero)
    • getDisjointBased

      public static final DeltaModel getDisjointBased(DeltaModel primaryModel, DeltaModel subgroupModel, TimeOrderCharacterData subgroupTOCD)