Package picard.fingerprint
Class FingerprintUtils.VariantContextSet
java.lang.Object
java.util.AbstractCollection<E>
java.util.AbstractSet<E>
java.util.TreeSet<htsjdk.variant.variantcontext.VariantContext>
picard.fingerprint.FingerprintUtils.VariantContextSet
- All Implemented Interfaces:
Serializable
,Cloneable
,Iterable<htsjdk.variant.variantcontext.VariantContext>
,Collection<htsjdk.variant.variantcontext.VariantContext>
,NavigableSet<htsjdk.variant.variantcontext.VariantContext>
,Set<htsjdk.variant.variantcontext.VariantContext>
,SortedSet<htsjdk.variant.variantcontext.VariantContext>
- Enclosing class:
- FingerprintUtils
public static class FingerprintUtils.VariantContextSet
extends TreeSet<htsjdk.variant.variantcontext.VariantContext>
A class that holds VariantContexts sorted by genomic position
- See Also:
-
Method Summary
Methods inherited from class java.util.TreeSet
add, addAll, ceiling, clear, clone, comparator, contains, descendingIterator, descendingSet, first, floor, headSet, headSet, higher, isEmpty, iterator, last, lower, pollFirst, pollLast, remove, size, spliterator, subSet, subSet, tailSet, tailSet
Methods inherited from class java.util.AbstractSet
equals, hashCode, removeAll
Methods inherited from class java.util.AbstractCollection
containsAll, retainAll, toArray, toArray, toString
Methods inherited from class java.lang.Object
finalize, getClass, notify, notifyAll, wait, wait, wait
Methods inherited from interface java.util.Collection
parallelStream, removeIf, stream, toArray