Class GcBiasUtils

java.lang.Object
picard.analysis.GcBiasUtils

public class GcBiasUtils extends Object
Utilities to calculate GC Bias Created by kbergin on 9/23/15.
  • Constructor Details

    • GcBiasUtils

      public GcBiasUtils()
  • Method Details

    • calculateGc

      public static int calculateGc(byte[] bases, int startIndex, int endIndex, picard.analysis.GcBiasUtils.CalculateGcState state)
    • calculateRefWindowsByGc

      public static int[] calculateRefWindowsByGc(int windows, File referenceSequence, int windowSize)
    • calculateAllGcs

      public static byte[] calculateAllGcs(byte[] refBases, int lastWindowStart, int windowSize)