Package picard.analysis.directed
package picard.analysis.directed
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ClassDescriptionThis tool takes a SAM/BAM file input and collects metrics that are specific for sequence datasets generated through hybrid-selection.CollectTargetedMetrics<METRIC extends MultilevelMetrics,
COLLECTOR extends TargetMetricsCollector<METRIC>> Both CollectTargetedPCRMetrics and CollectHsSelection share virtually identical program structures except for the name of their targeting mechanisms (e.g.This tool calculates a set of PCR-related metrics from an aligned SAM or BAM file containing targeted sequencing data.Calculates HS metrics for a given SAM or BAM file.Metrics generated by CollectHsMetrics for the analysis of target-capture sequencing experiments.Collects InsertSizeMetrics on the specified accumulationLevels usingA base class for Metrics for targeted panels.Metrics class for the analysis of reads obtained from targeted pcr experiments e.g.Calculates HS metrics for a given SAM or BAM file.TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection or Targeted PCR Techniques (TSCA).TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection or Targeted PCR Techniques (TSCA).TargetMetricsCollector<METRIC_TYPE extends MultilevelMetrics>TargetMetrics, are metrics to measure how well we hit specific targets (or baits) when using a targeted sequencing process like hybrid selection or Targeted PCR Techniques (TSCA).A simple class that is used to store the coverage information about an interval.