Package picard.sam.markduplicates.util
Class RepresentativeReadIndexerCodec
java.lang.Object
picard.sam.markduplicates.util.RepresentativeReadIndexerCodec
- All Implemented Interfaces:
htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
,Cloneable
public class RepresentativeReadIndexerCodec
extends Object
implements htsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
Codec for read names and integers that outputs the primitive fields and reads them back.
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Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionhtsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
clone()
decode()
void
void
void
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Field Details
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in
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out
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Constructor Details
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RepresentativeReadIndexerCodec
public RepresentativeReadIndexerCodec()
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Method Details
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clone
- Specified by:
clone
in interfacehtsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
- Overrides:
clone
in classObject
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setOutputStream
- Specified by:
setOutputStream
in interfacehtsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
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setInputStream
- Specified by:
setInputStream
in interfacehtsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
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getInputStream
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getOutputStream
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encode
- Specified by:
encode
in interfacehtsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
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decode
- Specified by:
decode
in interfacehtsjdk.samtools.util.SortingCollection.Codec<RepresentativeReadIndexer>
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