Package picard.arrays.illumina
Class InfiniumEGTFile
java.lang.Object
picard.arrays.illumina.InfiniumDataFile
picard.arrays.illumina.InfiniumEGTFile
- All Implemented Interfaces:
AutoCloseable
A class to parse the contents of an Illumina Infinium cluster (EGT) file
A cluster file contains information about the clustering information used in mapping red / green intensity information
to genotype calls
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Field Summary
FieldsModifier and TypeFieldDescriptionfloat[][]
float[][]
static final String
boolean
float[][]
float[][]
int[][]
int
String[]
float[]
Fields inherited from class picard.arrays.illumina.InfiniumDataFile
MAX_UNSIGNED_SHORT
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class picard.arrays.illumina.InfiniumDataFile
byteArrayToCharArray, byteArrayToFloat, byteArrayToInt, floatToByteArray, getIdentifier, setIdentifier, shortToByteArray
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Field Details
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EXTENSION
- See Also:
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gencallVersion
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clusterVersion
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callVersion
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normalizationVersion
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dateCreated
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isWGT
public boolean isWGT -
n
public int[][] n -
meanR
public float[][] meanR -
meanTheta
public float[][] meanTheta -
devR
public float[][] devR -
devTheta
public float[][] devTheta -
totalScore
public float[] totalScore -
rsNames
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manifestName
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numCodes
public int numCodes -
rsNameToIndex
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Constructor Details
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InfiniumEGTFile
- Throws:
IOException
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Method Details
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close
- Specified by:
close
in interfaceAutoCloseable
- Throws:
IOException
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getManifestName
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