Package picard.vcf
Enum Class GenotypeConcordanceStateCodes
- All Implemented Interfaces:
Serializable
,Comparable<GenotypeConcordanceStateCodes>
,Constable
Created by kbergin on 7/30/15.
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Nested Class Summary
Nested classes/interfaces inherited from class java.lang.Enum
Enum.EnumDesc<E extends Enum<E>>
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Enum Constant Summary
Enum ConstantsEnum ConstantDescriptionThese codes allow for constants in the truth state enum and the call state enum to be compared. -
Method Summary
Modifier and TypeMethodDescriptionReturns the enum constant of this class with the specified name.static GenotypeConcordanceStateCodes[]
values()
Returns an array containing the constants of this enum class, in the order they are declared.
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Enum Constant Details
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MISSING_CODE
These codes allow for constants in the truth state enum and the call state enum to be compared. The final INCOMPARABLE_CODE is for Call States that are not reflected in the Truth State, so they can never match. -
HOM_REF_CODE
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HET_REF_VAR1_CODE
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HET_VAR1_VAR2_CODE
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HOM_VAR1_CODE
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NO_CALL_CODE
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LOW_GQ_CODE
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LOW_DP_CODE
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VC_FILTERED_CODE
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GT_FILTERED_CODE
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IS_MIXED_CODE
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INCOMPARABLE_CODE
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Method Details
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values
Returns an array containing the constants of this enum class, in the order they are declared.- Returns:
- an array containing the constants of this enum class, in the order they are declared
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valueOf
Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum class has no constant with the specified nameNullPointerException
- if the argument is null
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