Package picard.sam.util
package picard.sam.util
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ClassDescriptionSimple Pair class.Argument Collection which holds parameters common to classes that want to add PG tags to reads in SAM/BAM filesSmall interface that provides access to the physical location information about a cluster.Small class that provides access to the physical location information about a cluster.Small class that provides access to the physical location information about a cluster.It is useful to define a key such that the key will occur at most once among the primary alignments in a given file (assuming the file is valid).Provides access to the physical location information about a cluster.Little struct-like class to hold a record index, the index of the corresponding representative read, and duplicate set size information.Compare two SAM/BAM files.Argument collection for SAM comparison