deb_control_files:
- control
- md5sums
deb_fields:
Architecture: all
Depends: perl:any, r-base-core, emmax, plink, eigensoft, libreadonly-perl, libparallel-forkmanager-perl,
libfile-slurp-perl, r-cran-getopt, r-cran-forecast, r-bioc-multtest, r-cran-optparse,
r-cran-uroot
Description: "software pipeline for performing genome wide association studies\n\
\ PIQUE is a software pipeline for performing genome wide association\n studies\
\ (GWAS). The main function of PIQUE is to provide \u2018convenience\u2019\n wrappers\
\ that allow users to perform GWAS using the popular program\n EMMAX (Kang et\
\ al., 2010) without the need to be familiar with all of\n the software tools\
\ used to generate the required EMMAX input files.\n PIQUE will also perform a\
\ number of quality control steps prior to\n running EMMAX, ensuring that the\
\ various input data files are in the\n correct format. PIQUE proceeds in two\
\ main stages although there are\n multiple entry and exit points from which the\
\ pipeline can be run. The\n first stage consists of running the \u201Cpique-input\u201D\
\ program, which can\n read genotype and phenotype information in several different\
\ formats and\n generates all the necessary input files required to run EMMAX.\
\ The\n second step in the pipeline uses the \u201Cpique-run\u201D program to\
\ actually run\n EMMAX using the files generated by \u201Cpique-input\u201D (or\
\ pre-existing\n user-supplied input files) to perform the GWAS and output the\
\ analysis\n summary files."
Homepage: https://github.com/tony-travis/PIQUE/
Installed-Size: '88'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: pique
Priority: optional
Section: science
Version: 1.0-7
srcpkg_name: pique
srcpkg_version: 1.0-7