deb_control_files:
- control
- md5sums
deb_fields:
Architecture: arm64
Depends: r-api-4.0, r-cran-ggplot2 (>= 3.4.0), r-cran-airr (>= 1.4.1), r-cran-ape,
r-cran-dplyr (>= 1.0), r-cran-igraph (>= 1.5.0), r-cran-matrix (>= 1.3-0), r-cran-progress,
r-cran-rcpp (>= 0.12.12), r-cran-readr, r-cran-rlang, r-cran-scales, r-cran-seqinr,
r-cran-stringi, r-cran-tibble, r-cran-tidyr (>= 1.0), r-bioc-biostrings (>= 2.56.0),
r-bioc-genomicalignments (>= 1.24.0), r-bioc-iranges (>= 2.22.2), libc6 (>= 2.17),
libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1)
Description: |-
Immunoglobulin Clonal Lineage and Diversity Analysis
Alakazam is part of the Immcantation analysis framework for Adaptive
Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of
tools to investigate lymphocyte receptor clonal lineages, diversity,
gene usage, and other repertoire level properties, with a focus on
high-throughput immunoglobulin (Ig) sequencing.
.
Alakazam serves five main purposes:
* Providing core functionality for other R packages in the Immcantation
framework. This includes common tasks such as file I/O, basic DNA
sequence manipulation, and interacting with V(D)J segment and gene
annotations.
* Providing an R interface for interacting with the output of the
pRESTO and Change-O tool suites.
* Performing lineage reconstruction on clonal populations of Ig
sequences and analyzing the topology of the resultant lineage trees.
* Performing clonal abundance and diversity analysis on lymphocyte
repertoires.
* Performing physicochemical property analyses of lymphocyte receptor
sequences.
Homepage: https://cran.r-project.org/package=alakazam
Installed-Size: '2853'
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Package: r-cran-alakazam
Priority: optional
Section: gnu-r
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-testthat
Version: 1.3.0-1
srcpkg_name: r-cran-alakazam
srcpkg_version: 1.3.0-1