Class LineageSequence

java.lang.Object
edu.msu.cme.rdp.readseq.readers.Sequence
edu.msu.cme.rdp.classifier.train.LineageSequence
All Implemented Interfaces:
Serializable

public class LineageSequence extends edu.msu.cme.rdp.readseq.readers.Sequence
A ParsedRawSequence holds the data for a raw sequence.
See Also:
  • Constructor Details

    • LineageSequence

      public LineageSequence(String n, List<String> al, String seq)
      Creates new ParsedRawSequence.
  • Method Details

    • getAncestors

      public List<String> getAncestors()
      Returns the list of the ancestor taxa, with the highest ranked taxon first.
    • getDesc

      public String getDesc()
      Overrides:
      getDesc in class edu.msu.cme.rdp.readseq.readers.Sequence
    • getPartialSeqIteratorbyGoodBases

      public edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator getPartialSeqIteratorbyGoodBases(int num_good_bases) throws IOException
      Throws:
      IOException