Class PairwiseSeqDistance
java.lang.Object
edu.msu.cme.rdp.classifier.train.validation.distance.PairwiseSeqDistance
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Constructor Summary
ConstructorsConstructorDescriptionPairwiseSeqDistance
(String trainseqFile, String taxFile, edu.msu.cme.rdp.alignment.AlignmentMode mode, boolean show_alignment) -
Method Summary
Modifier and TypeMethodDescriptionstatic void
This program does the pairwise alignment between each pair of sequences, reports a summary of the average distances and the stdev at each rank.void
printSummary
(PrintStream outStream)
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Constructor Details
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PairwiseSeqDistance
public PairwiseSeqDistance(String trainseqFile, String taxFile, edu.msu.cme.rdp.alignment.AlignmentMode mode, boolean show_alignment) throws IOException, edu.msu.cme.rdp.alignment.pairwise.rna.OverlapCheckFailedException - Throws:
IOException
edu.msu.cme.rdp.alignment.pairwise.rna.OverlapCheckFailedException
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Method Details
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printSummary
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main
This program does the pairwise alignment between each pair of sequences, reports a summary of the average distances and the stdev at each rank.- Parameters:
args
-- Throws:
Exception
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