Class PairwiseSeqDistance

java.lang.Object
edu.msu.cme.rdp.classifier.train.validation.distance.PairwiseSeqDistance

public class PairwiseSeqDistance extends Object
  • Constructor Details

    • PairwiseSeqDistance

      public PairwiseSeqDistance(String trainseqFile, String taxFile, edu.msu.cme.rdp.alignment.AlignmentMode mode, boolean show_alignment) throws IOException, edu.msu.cme.rdp.alignment.pairwise.rna.OverlapCheckFailedException
      Throws:
      IOException
      edu.msu.cme.rdp.alignment.pairwise.rna.OverlapCheckFailedException
  • Method Details

    • printSummary

      public void printSummary(PrintStream outStream)
    • main

      public static void main(String[] args) throws Exception
      This program does the pairwise alignment between each pair of sequences, reports a summary of the average distances and the stdev at each rank.
      Parameters:
      args -
      Throws:
      Exception