deb_control_files:
- conffiles
- control
- md5sums
deb_fields:
Architecture: amd64
Depends: libc6 (>= 2.34), perl:any, trnascan-se-common (= 2.0.12+ds-1), infernal
Description: |-
detection of transfer RNA genes in genomic sequence
tRNAscan-SE identifies 99-100% of transfer RNA genes in DNA sequence while
giving less than one false positive per 15 gigabases. Two previously described
tRNA detection programs are used as fast, first-pass prefilters to identify
candidate tRNAs, which are then analyzed by a highly selective tRNA covariance
model. This work represents a practical application of RNA covariance models,
which are general, probabilistic secondary structure profiles based on
stochastic context-free grammars. tRNAscan-SE searches at ~ 30 000 bp/s.
Additional extensions to tRNAscan-SE detect unusual tRNA homologues such as
selenocysteine tRNAs, tRNA-derived repetitive elements and tRNA pseudogenes.
Homepage: http://lowelab.ucsc.edu/tRNAscan-SE
Installed-Size: '741'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: trnascan-se
Priority: optional
Section: non-free/science
Version: 2.0.12+ds-1
srcpkg_name: trnascan-se
srcpkg_version: 2.0.12+ds-1