deb_control_files:
- control
- md5sums
- postinst
- prerm
deb_fields:
Architecture: arm64
Depends: python3-click, python3-numpy, python3-pysam, python3-scipy, python3:any
Description: |-
read simulator nanopore DRS datasets
Yanosim has three options:
.
1. yanosim model:
Creates an model of mismatches, insertions and deletions
based on an alignment of nanopore DRS reads to a
reference. Reads should be aligned to a transcriptome
i.e. without spliced alignment, using minimap2. They
should have the cs tag.
2. yanosim quantify:
Quantify the number of reads mapping to each
transcript in a reference, so that the right number
of reads can be simulated.
3. yanosim simulate:
Given a model created using yanosim model, and
per-transcript read counts created using yanosim
simulate, simulate error-prone long-reads from the
given fasta file.
Homepage: https://github.com/bartongroup/yanosim
Installed-Size: '45'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: yanosim
Priority: optional
Section: science
Version: 0.1-5
srcpkg_name: yanosim
srcpkg_version: 0.1-5