dbxobo

Function

Description

dbxobo indexes an ontology in OBO format, and builds EMBOSS B+tree format index files.

These indexes allow access of flat files larger than 2Gb.

Related application dbxedam provides additional index fields for EDAM-specific namespaces and relations.

Usage

Command line arguments


Input file format

dbxobo reads and indexes OBO format ontology files

Output file format

dbxobo creates one summary file for the database and two files for each field indexed.

Data files

Notes

References

Warnings

None.

Diagnostic Error Messages

None.

Exit status

It exits with a status of 0.

Known bugs

None.

Author(s)

History

Target users

Comments