public abstract class LockedAcidNNMethod extends PatternComputation implements NamedMethod
collector, fileName
Constructor and Description |
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LockedAcidNNMethod() |
Modifier and Type | Method and Description |
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ThermoResult |
computeThermodynamics(NucleotidSequences sequences,
int pos1,
int pos2,
ThermoResult result) |
abstract java.lang.String |
getName()
Gets the full name of the method.
|
boolean |
isApplicable(Environment environment,
int pos1,
int pos2) |
boolean |
isMissingParameters(NucleotidSequences sequences,
int pos1,
int pos2)
Check if one thermodynamic parameter is missing to compute the enthalpy and entropy of the pattern
at the positions pos1 and pos2.
|
getCollector, getData, getDataFileName, initialiseFileName, loadData, loadFile
public boolean isApplicable(Environment environment, int pos1, int pos2)
isApplicable
in interface PatternComputationMethod
isApplicable
in class PatternComputation
public ThermoResult computeThermodynamics(NucleotidSequences sequences, int pos1, int pos2, ThermoResult result)
computeThermodynamics
in interface PatternComputationMethod
computeThermodynamics
in class PatternComputation
sequences
- which contains the sequences entered by the user.result
- which contains the computed enthalpy, entropy and melting temperature.public boolean isMissingParameters(NucleotidSequences sequences, int pos1, int pos2)
PatternComputationMethod
isMissingParameters
in interface PatternComputationMethod
isMissingParameters
in class PatternComputation
sequences
- which contains the sequences entered by the user.public abstract java.lang.String getName()
getName
in interface NamedMethod