- readFile(InputStream, OutputStream, String[]) - Static method in class melting.BatchMain
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- readFile(File) - Static method in class melting.FileReader
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stocks the thermodynamic parameters from the file in a HashMap.
- readMeltingHelp() - Method in class melting.configuration.OptionManagement
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displays Melting help documentation.
- readOptions(String[]) - Method in class melting.configuration.OptionManagement
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if at least one of the options entered by the user is an option to display some information about Melting,
the requested information is displayed.
- register - Variable in class melting.approximativeMethods.ApproximativeMode
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RegisterMethods register : registers all the pattern computation methods implemented by Melting
- RegisterMethods - Class in melting.configuration
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This class registers all the methods and models implemented by Melting.
- RegisterMethods() - Constructor for class melting.configuration.RegisterMethods
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creates a RegisterMethods object with the different initialised HasMaps.
- RegisterMethods.MethodType - Enum in melting.configuration
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Represents a particular type of method (e.g., approximative method,
double dangling end method, Mg/Na mix correction method).
- removeLayoutComponent(Component) - Method in class meltinggui.MeltingLayout
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Removes the specified component from this MELTING layout.
- removeTerminalUnpairedNucleotides() - Method in class melting.sequences.NucleotidSequences
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find the real starting and ending positions of the duplex.
- restoreScreenPositions() - Method in class meltinggui.frames.OuterFrame
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Sets up the screen positions of the frames.
- ResultsPanel - Class in meltinggui.dialogs
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A panel to display the melting temperature, enthalpy and entropy results.
- ResultsPanel() - Constructor for class meltinggui.dialogs.ResultsPanel
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Create and set up the panel.
- runMelting(OutputStream, String[]) - Static method in class melting.BatchMain
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