Modifier and Type | Class and Description |
---|---|
class |
Broda05CNGRepeats
This class represents the CNG repeats model bro05.
|
Modifier and Type | Class and Description |
---|---|
class |
AllawiSantalucia97
This class represents the nearest neighbor model all97.
|
class |
Breslauer86
This class represents the nearest neighbor model bre86.
|
class |
CricksNNMethod
This class represents the NN nearest neighbor model (adds the thermodynamic energy (enthalpy and entropy) for each Crick's pair composing the duplex).
|
class |
DecomposedInitiation
This class represents one model to compute the initiation enthalpy and entropy.
|
class |
Freier86
This class represents the nearest neighbor model fre86.
|
class |
GlobalInitiation
This class represents one model to compute the initiation enthalpy and entropy.
|
class |
Santalucia04
This class represents the nearest neighbor model san04.
|
class |
Santalucia96
This class represents the nearest neighbor model san96.
|
class |
Sugimoto95
This class represents the nearest neighbor model sug95.
|
class |
Sugimoto96
This class represents the nearest neighbor model sug96.
|
class |
Tanaka04
This class represents the nearest neighbor model tan04.
|
class |
Turner06
This class represents the nearest neighbor model tur06.
|
class |
Xia98
This class represents the nearest neighbor model xia98.
|
Modifier and Type | Class and Description |
---|---|
class |
Santalucia04InternalLoop
This class represents the internal loop model san04.
|
class |
Turner06InternalLoop
This class represents the internal loop model tur06.
|
class |
Znosko071x2Loop
This class represents the 1x2 internal loop model zno07.
|
Modifier and Type | Class and Description |
---|---|
class |
Santalucia04LongBulgeLoop
This class represents the long bulge loop model san04.
|
class |
Turner99_06LongBulgeLoop
This class represents the long bulge loop model tur06.
|
Modifier and Type | Class and Description |
---|---|
class |
Sugimoto02DNADanglingEnd
This class represents the long dangling end model sugdna02 (for long poly A only).
|
class |
Sugimoto02RNADanglingEnd
This class represents the long dangling end model sugrna02 (for long poly A only).
|
class |
SugimotoLongDanglingEndMethod
This class represents the long dangling end model (for long poly A only)from Sugimoto et al. 2002.
|
Modifier and Type | Class and Description |
---|---|
class |
SecondDanglingEndMethod
This class represents the second dangling end model.
|
class |
Serra05DoubleDanglingEnd
This class represents the second dangling end model ser05.
|
class |
Serra06DoubleDanglingEnd
This class represents the second dangling end model ser06.
|
Modifier and Type | Class and Description |
---|---|
class |
GlobalSingleBulgeLoopMethod
This class represents one single bulge loop model.
|
class |
Santalucia04SingleBulgeLoop
This class represents the single bulge loop model san04.
|
class |
Serra07SingleBulgeLoop
This class represents the single bulge loop model ser07.
|
class |
Tanaka04SingleBulgeLoop
This class represents the single bulge loop model tan04.
|
class |
Turner99_06SingleBulgeLoop
This class represents the single bulge loop model tur06.
|
Modifier and Type | Class and Description |
---|---|
class |
Bommarito00SingleDanglingEnd
This class represents the single dangling end model bom00.
|
class |
Serra06_08SingleDanglingEnd
This class represents the single dangling end model ser08.
|
class |
SingleDanglingEndMethod
This class represents the single dangling end model.
|
Modifier and Type | Class and Description |
---|---|
class |
AllawiSantaluciaPeyret97_98_99mm
This class represents the single mismatch model allsanpey.
|
class |
Turner06mm
This class represents the single mismatch model tur06.
|
class |
Watkins11mm
This class represents the DNA/RNA single mismatch model wat11.
|
class |
Znosko07mm
This class represents the single mismatch model zno07.
|
class |
Znosko08mm
This class represents the single mismatch model zno08.
|
class |
ZnoskoMethod
This class represents the single mismatch model from Znosco et al, 2007, 2008.
|
Modifier and Type | Class and Description |
---|---|
class |
Asanuma05Azobenzene
This class represents the azobenzene (X_C or X_T) model asa05.
|
class |
McTigue04LockedAcid
This class represents the locked nucleic acid (AL, GL, CL or TL) model mct04.
|
class |
Sugimoto01Hydroxyadenine
This class represents the hydroxyadenine (A*) model sug01.
|
Modifier and Type | Class and Description |
---|---|
class |
AllawiSantaluciaPeyret97_98_99tanmm
This class represents the tandem mismatches model allsanpey.
|
class |
Turner99_06tanmm
This class represents the tandem mismatches model tur06.
|
Modifier and Type | Class and Description |
---|---|
class |
InosineNNMethod
This class represents the inosine model.
|
class |
Santalucia05Inosine
This class represents the inosine model san05.
|
class |
Serra12Wobble
This class represents the GU base pair model ser12.
|
class |
Turner99Wobble
This class represents the GU base pair model tur99.
|
class |
Znosko07Inosine
This class represents the inosine model zno07.
|