A B C D E F G H I L M N O P R S T U V W X Z 

L

LABEL_GROUP - Static variable in class meltinggui.MeltingLayout
Component group type: label group.
layoutContainer(Container) - Method in class meltinggui.MeltingLayout
Lays out the container argument using this MELTING layout.
legalInformation - Static variable in class melting.configuration.OptionManagement
Option name for the melting legal information.
loadData(HashMap<String, String>) - Method in interface melting.methodInterfaces.PatternComputationMethod
To load the necessary thermodynamic parameters of the implemented class.
loadData(HashMap<String, String>) - Method in class melting.patternModels.InternalLoops.Santalucia04InternalLoop
 
loadData(HashMap<String, String>) - Method in class melting.patternModels.PatternComputation
 
loadData(HashMap<String, String>) - Method in class melting.patternModels.secondDanglingEnds.SecondDanglingEndMethod
 
loadData(HashMap<String, String>) - Method in class melting.patternModels.singleBulge.Santalucia04SingleBulgeLoop
 
loadData(HashMap<String, String>) - Method in class melting.patternModels.singleBulge.Turner99_06SingleBulgeLoop
 
loadData(HashMap<String, String>) - Method in class melting.patternModels.specificAcids.McTigue04LockedAcid
 
loadData(HashMap<String, String>) - Method in class melting.patternModels.specificAcids.Owczarzy11SingleMismatchLockedAcid
 
loadData(HashMap<String, String>) - Method in class melting.patternModels.specificAcids.Owczarzy11TandemLockedAcid
 
loadData(HashMap<String, String>) - Method in class melting.patternModels.specificAcids.Sugimoto01Hydroxyadenine
 
loadData(HashMap<String, String>) - Method in class melting.patternModels.tandemMismatches.AllawiSantaluciaPeyret97_98_99tanmm
 
loadFile(String, DataCollect) - Method in interface melting.methodInterfaces.PatternComputationMethod
To load the thermodynamic parameters from the file "name" and stock them in the map of a DataCollect object.
loadFile(String, DataCollect) - Method in class melting.patternModels.PatternComputation
 
loadSequencesTest(String) - Static method in class examples.MainTest
loads the data from the file and stocks them in a Properties object.
lockedAcidMethod - Static variable in class melting.configuration.OptionManagement
Option name for the choice of locked nucleic acid computation method.
LockedAcidNNMethod - Class in melting.patternModels.specificAcids
This class represents the locked nucleic acid (AL, GL, CL or TL) model owc11.
LockedAcidNNMethod() - Constructor for class melting.patternModels.specificAcids.LockedAcidNNMethod
 
lockedAcidSingleMismatchMethod - Static variable in class melting.configuration.OptionManagement
Option name for the choice of locked nucleic acid with single mismatch computation method.
logError(String) - Static method in class melting.configuration.OptionManagement
Logs an error to the melting logger.
logError(String, Throwable) - Static method in class melting.configuration.OptionManagement
Logs an error message to the melting logger, along with the error itself.
logException(Exception) - Method in class meltinggui.frames.ErrorFrame
Logs an exception into the exception log text area.
logException(Exception) - Method in class meltinggui.frames.OuterFrame
Logs an exception on to the error frame.
logFileName(String) - Static method in class melting.configuration.OptionManagement
Logs a file name to the melting logger.
logInfo(String) - Static method in class melting.configuration.OptionManagement
Logs information to the melting logger.
logMessage(String) - Static method in class melting.configuration.OptionManagement
Logs a message to the melting logger.
logMethodName(String) - Static method in class melting.configuration.OptionManagement
Logs the name of a method to the melting logger.
logTemperatureEquation(String) - Static method in class melting.configuration.OptionManagement
Logs a temperature equation to the melting logger.
logWarning(String) - Static method in class melting.configuration.OptionManagement
Logs a warning to the melting logger.
longBulgeLoopMethod - Static variable in class melting.configuration.OptionManagement
Option name for the choice of long bulge loop computation method.
longDanglingEndMethod - Static variable in class melting.configuration.OptionManagement
Option name for the choice of long dangling end computation method.
A B C D E F G H I L M N O P R S T U V W X Z