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Hierarchy For All Packages
Package Hierarchies:
examples
,
melting
,
melting.approximativeMethods
,
melting.configuration
,
melting.correctionMethods
,
melting.exceptions
,
melting.handlers
,
melting.ionCorrection.magnesiumCorrections
,
melting.ionCorrection.mixedNaMgCorrections
,
melting.ionCorrection.sodiumCorrections
,
melting.ionCorrection.sodiumEquivalence
,
melting.methodInterfaces
,
melting.nearestNeighborModel
,
melting.otherCorrections.dmsoCorrections
,
melting.otherCorrections.formamideCorrections
,
melting.patternModels
,
melting.patternModels.cngPatterns
,
melting.patternModels.cricksPair
,
melting.patternModels.InternalLoops
,
melting.patternModels.longBulge
,
melting.patternModels.longDanglingEnds
,
melting.patternModels.secondDanglingEnds
,
melting.patternModels.singleBulge
,
melting.patternModels.singleDanglingEnds
,
melting.patternModels.singleMismatch
,
melting.patternModels.specificAcids
,
melting.patternModels.tandemMismatches
,
melting.patternModels.wobble
,
melting.sequences
,
meltinggui
,
meltinggui.dialogs
,
meltinggui.frames
,
meltinggui.widgets
Class Hierarchy
java.lang.Object
melting.approximativeMethods.
ApproximativeMode
(implements melting.methodInterfaces.
MeltingComputationMethod
)
melting.approximativeMethods.
Ahsen01
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
MarmurChester62_93
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
MarmurChester62_93_corr
melting.approximativeMethods.
MarmurSchildkrautDoty
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
Owen69
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
Santalucia98
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
Wetmur91
melting.approximativeMethods.
WetmurDNA91
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
WetmurDNARNA91
(implements melting.methodInterfaces.
NamedMethod
)
melting.approximativeMethods.
WetmurRNA91
(implements melting.methodInterfaces.
NamedMethod
)
meltinggui.
ArgsMessage
melting.sequences.
BasePair
melting.
BatchMain
melting.otherCorrections.formamideCorrections.
Blake96FormamideCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
meltinggui.widgets.
ComboBoxOption
melting.
CompatibleMain
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.JComboBox<E> (implements javax.accessibility.Accessible, java.awt.event.ActionListener, java.awt.ItemSelectable, javax.swing.event.ListDataListener)
meltinggui.dialogs.
IonConcentrationDialog
(implements meltinggui.dialogs.
DialogInterface
)
meltinggui.widgets.
MeltingComboBox
(implements meltinggui.widgets.
InputWidgetInterface
)
meltinggui.widgets.
HybridizationWidget
javax.swing.JInternalFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
meltinggui.frames.
ErrorFrame
meltinggui.frames.
MeltingFrame
javax.swing.JPanel (implements javax.accessibility.Accessible)
meltinggui.dialogs.
ComboBoxDialog
(implements meltinggui.dialogs.
DialogInterface
)
meltinggui.widgets.
InputFieldArray
<W>
meltinggui.widgets.
InputField
<W> (implements meltinggui.widgets.
InputWidgetInterface
)
meltinggui.dialogs.
HybridizationDialog
(implements meltinggui.dialogs.
DialogInterface
)
meltinggui.dialogs.
OligomerConcentrationDialog
(implements meltinggui.dialogs.
DialogInterface
)
meltinggui.widgets.
OutputField
(implements meltinggui.widgets.
InputWidgetInterface
)
meltinggui.dialogs.
SequenceDialog
(implements meltinggui.dialogs.
DialogInterface
)
meltinggui.dialogs.
ResultsPanel
javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
javax.swing.JTextArea
meltinggui.widgets.
MeltingTextArea
(implements meltinggui.widgets.
InputWidgetInterface
)
javax.swing.JTextField (implements javax.swing.SwingConstants)
meltinggui.widgets.
MeltingTextField
(implements meltinggui.widgets.
InputWidgetInterface
)
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Frame (implements java.awt.MenuContainer)
javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
meltinggui.
MeltingGui
(implements java.util.Observer)
meltinggui.frames.
OuterFrame
melting.
DataCollect
org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
melting.handlers.
NodeHandler
melting.handlers.
DataHandler
melting.handlers.
EnergyHandler
melting.handlers.
ThermoHandler
melting.correctionMethods.
DNADMSOCorrections
(implements melting.methodInterfaces.
CorrectionMethod
)
melting.otherCorrections.dmsoCorrections.
Ahsen01DMSOCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.otherCorrections.dmsoCorrections.
Cullen76DMSOCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.otherCorrections.dmsoCorrections.
Escara80DMSOCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.otherCorrections.dmsoCorrections.
Musielski81DMSOCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.correctionMethods.
EntropyCorrection
(implements melting.methodInterfaces.
CorrectionMethod
)
melting.ionCorrection.sodiumCorrections.
Ahsen01SodiumCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
Santalucia98_04SodiumCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.magnesiumCorrections.
Tan06MagnesiumCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
Tan06SodiumCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.magnesiumCorrections.
Tan07MagnesiumCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.mixedNaMgCorrections.
Tan07MixedNaMgCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
Tan07SodiumCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.
Environment
melting.
FileReader
melting.otherCorrections.formamideCorrections.
FormamideLinearMethod
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
java.util.logging.Formatter
melting.
MeltingFormatter
meltinggui.frames.
FrameScreenPosition
(implements java.io.Serializable)
melting.ionCorrection.sodiumCorrections.
FrankKamenetskii71SodiumCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
meltinggui.frames.
GuiScreenPositions
(implements java.io.Serializable)
melting.
Helper
melting.
Main
examples.
MainTest
examples.
MainTestApproximativeMode
examples.
MainTestApproximativeModeMeltingC
examples.
MainTestAzobenzene
examples.
MainTestCNGSequences
examples.
MainTestDNADanglingEndMeltingC
examples.
MainTestDNAMagnesiumCorrections
examples.
MainTestDNAMismatchesMeltingC
examples.
MainTestDNASodiumCorrections
examples.
MainTestGUBasePairs
examples.
MainTestHydroxyadenine
examples.
MainTestInosineBasePairs
examples.
MainTestInosineMelting4_3
examples.
MainTestInternalLoop
examples.
MainTestLockedAcidNucleic
examples.
MainTestLongDanglingEnd
examples.
MainTestMeltingC4_3PerfectMatching
examples.
MainTestMeltingCPerfectMatching
examples.
MainTestNaEqMethods
examples.
MainTestPerfectMatching
examples.
MainTestSecondDanglingEnd
examples.
MainTestSingleBulgeLoops
examples.
MainTestSingleDanglingEnd
examples.
MainTestSingleMismatches
examples.
MainTestSingleMismatchLockedAcidNucleic
examples.
MainTestTandemLockedAcidNucleic
examples.
MainTestTandemMismatches
melting.ionCorrection.sodiumCorrections.
MarmurSchildkrautDoty98_62SodiumCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
meltinggui.
MeltingCalculator
meltinggui.
MeltingLayout
(implements java.awt.LayoutManager2, java.io.Serializable)
melting.configuration.
MethodText
melting.nearestNeighborModel.
NearestNeighborMode
(implements melting.methodInterfaces.
MeltingComputationMethod
)
melting.sequences.
NucleotidSequences
java.util.Observable
meltinggui.
MeltingObservable
melting.configuration.
OptionManagement
melting.ionCorrection.sodiumCorrections.
Owczarzy04SodiumCorrection19
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
Owczarzy04SodiumCorrection20
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
Owczarzy04SodiumCorrection21
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
Owczarzy04SodiumCorrection22
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.magnesiumCorrections.
Owczarzy08MagnesiumCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.mixedNaMgCorrections.
Owczarzy08MixedNaMgCorrection
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.
PatternComputation
(implements melting.methodInterfaces.
PatternComputationMethod
)
melting.patternModels.singleMismatch.
AllawiSantaluciaPeyret97_98_99mm
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.tandemMismatches.
AllawiSantaluciaPeyret97_98_99tanmm
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.specificAcids.
Asanuma05Azobenzene
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cngPatterns.
Broda05CNGRepeats
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
CricksNNMethod
melting.patternModels.cricksPair.
DecomposedInitiation
melting.patternModels.cricksPair.
AllawiSantalucia97
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Tanaka04
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Freier86
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
GlobalInitiation
melting.patternModels.cricksPair.
Breslauer86
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Santalucia96
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Santalucia04
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Sugimoto95
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Sugimoto96
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Turner06
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.cricksPair.
Xia98
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleBulge.
GlobalSingleBulgeLoopMethod
melting.patternModels.singleBulge.
Serra07SingleBulgeLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleBulge.
Tanaka04SingleBulgeLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.wobble.
InosineNNMethod
melting.patternModels.wobble.
Santalucia05Inosine
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.wobble.
Znosko07Inosine
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.specificAcids.
LockedAcidNNMethod
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.specificAcids.
Owczarzy11SingleMismatchLockedAcid
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.specificAcids.
Owczarzy11TandemLockedAcid
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.specificAcids.
McTigue04LockedAcid
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.specificAcids.
Owczarzy11LockedAcid
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.InternalLoops.
Santalucia04InternalLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.longBulge.
Santalucia04LongBulgeLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleBulge.
Santalucia04SingleBulgeLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.secondDanglingEnds.
SecondDanglingEndMethod
melting.patternModels.secondDanglingEnds.
Serra05DoubleDanglingEnd
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.secondDanglingEnds.
Serra06DoubleDanglingEnd
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.wobble.
Serra12Wobble
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleDanglingEnds.
SingleDanglingEndMethod
melting.patternModels.singleDanglingEnds.
Bommarito00SingleDanglingEnd
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleDanglingEnds.
Serra06_08SingleDanglingEnd
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.specificAcids.
Sugimoto01Hydroxyadenine
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.longDanglingEnds.
SugimotoLongDanglingEndMethod
melting.patternModels.longDanglingEnds.
Sugimoto02DNADanglingEnd
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.longDanglingEnds.
Sugimoto02RNADanglingEnd
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.InternalLoops.
Turner06InternalLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleMismatch.
Turner06mm
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.longBulge.
Turner99_06LongBulgeLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleBulge.
Turner99_06SingleBulgeLoop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.tandemMismatches.
Turner99_06tanmm
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.wobble.
Turner99Wobble
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleMismatch.
Watkins11mm
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.InternalLoops.
Znosko071x2Loop
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleMismatch.
ZnoskoMethod
melting.patternModels.singleMismatch.
Znosko07mm
(implements melting.methodInterfaces.
NamedMethod
)
melting.patternModels.singleMismatch.
Znosko08mm
(implements melting.methodInterfaces.
NamedMethod
)
melting.configuration.
RegisterMethods
melting.ionCorrection.sodiumCorrections.
Santalucia96SodiumCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumCorrections.
SchildkrautLifson65SodiumCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumEquivalence.
SodiumEquivalent
(implements melting.methodInterfaces.
SodiumEquivalentMethod
)
melting.ionCorrection.sodiumEquivalence.
Ahsen01_NaEquivalent
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumEquivalence.
Mitsuhashi96NaEquivalent
(implements melting.methodInterfaces.
NamedMethod
)
melting.ionCorrection.sodiumEquivalence.
Peyret00_NaEquivalent
(implements melting.methodInterfaces.
NamedMethod
)
melting.
Thermodynamics
melting.
ThermoResult
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
java.lang.RuntimeException
melting.exceptions.
FileException
melting.exceptions.
MethodNotApplicableException
melting.exceptions.
NoExistingMethodException
melting.exceptions.
NoExistingOutputFileException
melting.exceptions.
NucleicAcidNotKnownException
melting.exceptions.
OptionSyntaxError
melting.exceptions.
SequenceException
melting.exceptions.
ThermodynamicParameterError
melting.ionCorrection.sodiumCorrections.
Wetmur91SodiumCorrection
(implements melting.methodInterfaces.
CorrectionMethod
, melting.methodInterfaces.
NamedMethod
)
Interface Hierarchy
melting.methodInterfaces.
CorrectionMethod
meltinggui.dialogs.
DialogInterface
meltinggui.widgets.
InputWidgetInterface
melting.methodInterfaces.
MeltingComputationMethod
melting.methodInterfaces.
NamedMethod
melting.methodInterfaces.
PatternComputationMethod
melting.methodInterfaces.
SodiumEquivalentMethod
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
melting.configuration.
RegisterMethods.MethodType
meltinggui.
ArgsMessage.ArgumentType
meltinggui.
MeltingLayout.ComponentGroupType
meltinggui.
MeltingLayout.Size
melting.sequences.
SpecificAcidNames
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