Methods
getDistribution(peakDataList, sequence, matchedUnMatchedList)
Get the envelopes/distribution for the sequence
Parameters:
Name | Type | Description |
---|---|---|
peakDataList |
Array | Contains peak list information |
sequence |
String | Contains protein sequence |
matchedUnMatchedList |
Array | Contains all matched and unmatched list |
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getMatchedAndUnMatchedList(monoMassList, matchedList)
Set matched indicator to complete data and Seperate matched and unmatched list of data with matchedInd attribute
Parameters:
Name | Type | Description |
---|---|---|
monoMassList |
Array | Contains mono Mass list data |
matchedList |
Array | Contains all the data of both matched and unmatched data |
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getMatchedAndUnmatchedPrefixAndSuffixMassList(prefixOrSuffixMassList, monoMassList, massErrorthVal, ppmErrorthVal, prefixInd)
Get All the matched positions and mass list seperated with a matched indicator
Parameters:
Name | Type | Description |
---|---|---|
prefixOrSuffixMassList |
Array | List of prefix and suffix masses |
monoMassList |
Array | Contains Mono Mass list |
massErrorthVal |
Float | Mass Error Threshold value entered by user |
ppmErrorthVal |
Float | PPM Error Threshold value entered by user |
prefixInd |
String | contains if the complete data is of prefix/suffix mass list |
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getMatchedPeakList(prefixOrSuffixMassList, monoMassList, sequence, massErrorthVal, ppmErrorthVal, ionType, preOrSufInd)
Returns Complete list with matched Indication
Parameters:
Name | Type | Description |
---|---|---|
prefixOrSuffixMassList |
Array | List with either prefix or suffix mass list |
monoMassList |
Array | Contains Mono Mass list from html page |
sequence |
String | Protein sequence |
massErrorthVal |
Float | Threshhold value entered by user to determine the mass error and matched peaks |
ppmErrorthVal |
Float | Threshhold value entered by user to determine the mass error and matched peaks in ppm units |
ionType |
String | Contains either y/b |
preOrSufInd |
String | Contains information of either PREFIX/SUFFIX |
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matchedPeakAttributes(monoMassList_temp, id, ion, position, massDiff, mass, matchedInd)
Function to form object with necessary attributes at each amino acid position
Parameters:
Name | Type | Description |
---|---|---|
monoMassList_temp |
Object | Single element from mono Mass List |
id |
String | Unique Id for each peak |
ion |
String | Contains matched type(b/y) appended with charge |
position |
Integer | Position of the amino acid |
massDiff |
Float | Mass difference at particular position |
mass |
Float | Mass at the position of the acid |
matchedInd |
Char | Indicator indicating matched/not matched. If matched containd "Y" |
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