deb_control_files:
- control
- md5sums
deb_fields:
Architecture: arm64
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libstdc++6 (>= 11), python3:any, python3,
hisat2, jellyfish
Description: |-
rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the
classification of DNA sequences from microbial samples, with better
sensitivity than and comparable accuracy to other leading systems. The
system uses a novel indexing scheme based on the Burrows-Wheeler
transform (BWT) and the Ferragina-Manzini (FM) index, optimized
specifically for the metagenomic classification problem. Centrifuge
requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
genomes) yet provides very fast classification speed, allowing it to
process a typical DNA sequencing run within an hour. Together these
advances enable timely and accurate analysis of large metagenomics data
sets on conventional desktop computers.
Homepage: https://ccb.jhu.edu/software/centrifuge/
Installed-Size: '1597'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: centrifuge
Priority: optional
Section: science
Version: 1.0.3-11
srcpkg_name: centrifuge
srcpkg_version: 1.0.3-11