deb_control_files:
- control
- md5sums
deb_fields:
Architecture: all
Depends: microbiomeutil-data, cdbfasta, ncbi-blast+-legacy
Description: "detects likely chimeras in PCR amplified DNA\n ChimeraSlayer is a\
\ chimeric sequence detection utility, compatible with\n near-full length Sanger\
\ sequences and shorter 454-FLX sequences (~500bp).\n .\n Chimera Slayer involves\
\ the following series of steps that operate to\n flag chimeric 16S rRNA sequences:\n\
\ .\n 1. the ends of a query sequence are searched against an included\n \
\ database of reference chimera-free 16S sequences to identify potential\n \
\ parents of a chimera\n 2. candidate parents of a chimera are selected as those\
\ that form a\n branched best scoring alignment to the NAST-formatted query\
\ sequence\n 3. the NAST alignment of the query sequence is improved in a\n \
\ \u2018chimera-aware\u2019 profile-based NAST realignment to the selected\n\
\ reference parent sequences\n 4. an evolutionary framework is used to flag\
\ query sequences found to\n exhibit greater sequence homology to an in silico\
\ chimera formed\n between any two of the selected reference parent sequences.\n\
\ .\n To run Chimera Slayer, you need NAST-formatted sequences generated by\n\
\ the nast-ier utility.\n .\n ChimeraSlayer is part of the microbiomeutil suite."
Homepage: http://microbiomeutil.sourceforge.net/
Installed-Size: '156'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: chimeraslayer
Priority: optional
Recommends: nast-ier
Section: science
Source: microbiomeutil
Version: 20101212+dfsg1-5
srcpkg_name: microbiomeutil
srcpkg_version: 20101212+dfsg1-5