deb_control_files:
- control
- md5sums
deb_fields:
Architecture: all
Depends: default-jre | java7-runtime | java8-runtime | java9-runtime | java10-runtime
| java11-runtime, libbatik-java, libhtsjdk-java, libjheatchart-java
Description: |-
Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states.
ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of
various histone modifications to discover de novo the major re-occuring
combinatorial and spatial patterns of marks. ChromHMM is based on a
multivariate Hidden Markov Model that explicitly models the presence or
absence of each chromatin mark. The resulting model can then be used to
systematically annotate a genome in one or more cell types. By automatically
computing state enrichments for large-scale functional and annotation datasets
ChromHMM facilitates the biological characterization of each state. ChromHMM
also produces files with genome-wide maps of chromatin state annotations that
can be directly visualized in a genome browser.
Homepage: http://compbio.mit.edu/ChromHMM/
Installed-Size: '207'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: chromhmm
Priority: optional
Section: science
Version: 1.24+dfsg-1
srcpkg_name: chromhmm
srcpkg_version: 1.24+dfsg-1