deb_control_files:
- control
- md5sums
- postinst
- prerm
- shlibs
- triggers
deb_fields:
Architecture: amd64
Depends: libc6 (>= 2.34), zlib1g (>= 1:1.1.4), python3-biopython, python3-dendropy,
python3-multiprocess, python3-numpy, python3-scipy, python3:any, python3, raxml
Description: |-
phylogenetic analysis of genome sequences
Gubbins supports rapid phylogenetic analysis of large samples of
recombinant bacterial whole genome sequences.
.
Gubbins (Genealogies Unbiased By recomBinations In Nucleotide
Sequences) is an algorithm that iteratively identifies loci containing
elevated densities of base substitutions while concurrently constructing
a phylogeny based on the putative point mutations outside of these
regions. Simulations demonstrate the algorithm generates highly accurate
reconstructions under realistic models of short-term bacterial
evolution, and can be run in only a few hours on alignments of hundreds
of bacterial genome sequences.
Homepage: https://sanger-pathogens.github.io/gubbins/
Installed-Size: '473'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: gubbins
Priority: optional
Recommends: iqtree, fasttree
Section: science
Suggests: r-base-core
Version: 3.3.5-1
srcpkg_name: gubbins
srcpkg_version: 3.3.5-1