deb_control_files:
- control
- md5sums
deb_fields:
Architecture: amd64
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.0), libgsl27 (>= 2.7.1), libstdc++6 (>=
11), zlib1g (>= 1:1.2.3.3), r-base-core, r-cran-getopt, r-cran-hmisc, r-cran-lattice,
r-cran-survival, r-cran-formula, r-cran-ggplot2
Description: |-
command-line tools for processing biological sequencing data
Ea-utils provides a set of command-line tools for processing biological
sequencing data, barcode demultiplexing, adapter trimming, etc.
.
Primarily written to support an Illumina based pipeline - but should work with
any FASTQs.
.
Main Tools are:
.
* fastq-mcf
Scans a sequence file for adapters, and, based on a log-scaled threshold,
determines a set of clipping parameters and performs clipping. Also does
skewing detection and quality filtering.
* fastq-multx
Demultiplexes a fastq. Capable of auto-determining barcode id's based on a
master set fields. Keeps multiple reads in-sync during demultiplexing. Can
verify that the reads are in-sync as well, and fail if they're not.
* fastq-join
Similar to audy's stitch program, but in C, more efficient and supports some
automatic benchmarking and tuning. It uses the same "squared distance for
anchored alignment" as other tools.
* varcall
Takes a pileup and calculates variants in a more easily parameterized manner
than some other tools.
Homepage: https://expressionanalysis.github.io/ea-utils/
Installed-Size: '747'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: ea-utils
Priority: optional
Recommends: med-config (>= 2.1)
Section: science
Source: ea-utils (1.1.2+dfsg-9)
Version: 1.1.2+dfsg-9+b2
srcpkg_name: ea-utils
srcpkg_version: 1.1.2+dfsg-9