deb_control_files:
- control
- md5sums
deb_fields:
Architecture: arm64
Built-Using: golang-1.19 (= 1.19.8-2), golang-github-alexflint-go-arg (= 1.3.0+ds-2),
golang-github-alexflint-go-scalar (= 1.0.0+ds-2), golang-github-biogo-hts (= 1.4.4+dfsg1-1),
golang-github-klauspost-compress (= 1.15.12+ds1-3), golang-github-klauspost-pgzip
(= 1.2.5-2), golang-github-shenwei356-xopen (= 0.0~git20181203.f4f16dd-2)
Depends: libc6 (>= 2.34)
Description: |-
programs for use in ggd
Takes a genome file and (currently) a .vcf.gz or
a .bed.gz and checks that:
.
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
.
As a result, any new genome going into GGD will have
a .genome file that will dictate the sort order
and presence or absence of the 'chr' prefix for chromosomes
Homepage: https://github.com/gogetdata/ggd-utils
Installed-Size: '4842'
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Package: ggd-utils
Priority: optional
Section: science
Source: ggd-utils (1.0.0+ds-1)
Version: 1.0.0+ds-1+b6
srcpkg_name: ggd-utils
srcpkg_version: 1.0.0+ds-1