Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192658_1_val_1.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 97071168 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-101 |
%GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGGTTCATC | 97554 | 0.10049740001068083 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTACGAA | 30200 | 0.0 | 24.02896 | 1 |
TAGATCG | 14985 | 0.0 | 20.357065 | 8 |
CTATACC | 44975 | 0.0 | 18.518057 | 94-95 |
CGGGTGT | 31845 | 0.0 | 17.193033 | 1 |
TGCGTCG | 49535 | 0.0 | 16.731413 | 9 |
TACCGCG | 21910 | 0.0 | 16.666508 | 1 |
ACGAACG | 31975 | 0.0 | 16.381367 | 28-29 |
CGCATTC | 57795 | 0.0 | 15.993539 | 94-95 |
GTGCGTC | 56045 | 0.0 | 15.632973 | 8 |
GTCCGAA | 13460 | 0.0 | 15.621067 | 1 |
GCGGGTT | 20655 | 0.0 | 15.517128 | 1 |
CGGTATA | 17270 | 0.0 | 15.378368 | 4 |
TACGAAT | 48200 | 0.0 | 15.1999855 | 2 |
TTTAGCG | 35190 | 0.0 | 14.863411 | 10-11 |
ACGTACG | 12775 | 0.0 | 14.6026535 | 36-37 |
CGTACGA | 14135 | 0.0 | 14.471118 | 36-37 |
ACTATCG | 22625 | 0.0 | 14.41295 | 58-59 |
TACGTAC | 14565 | 0.0 | 14.208785 | 34-35 |
GCGGTGT | 55555 | 0.0 | 14.166049 | 2 |
CCTATAC | 49860 | 0.0 | 14.058136 | 94-95 |