FastQCFastQC Report
Tue 3 May 2016
SRR3192657_2_val_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192657_2_val_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93144645
Sequences flagged as poor quality0
Sequence length20-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGTCG96300.022.0311137
TAACACG156600.019.821127
TAGTGCG185450.018.8709778-79
GGCGCGT316700.018.6541885
GTCTAAC168850.017.9721134
AACACGT181350.016.8363918
GTACTCG286950.016.42323328-29
TACGCAC268700.015.45311850-51
TATGCCG243350.014.61156686-87
CGCGTGC412000.014.5753387
AGCGCTC345100.014.52790459
TGGCGCG412250.013.8495084
CGGTACA323300.013.43345660-61
TGCGAAT326100.013.11550974-75
CACTGCG399600.013.0068985
CCAGTAG401950.012.9882215
ACCCGAT367950.012.95510876-77
CGATCGG212150.012.93898992-93
CGCACGG324900.012.90327652-53
TCGTAAG106050.012.8731486