FastQCFastQC Report
Tue 3 May 2016
SRR3192401_2_val_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192401_2_val_2.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95236637
Sequences flagged as poor quality0
Sequence length20-100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1007470.10578596974187571No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA1134250.046.8027531
GTATCAA1969500.037.278031
GTACATG3558100.033.7964481
GAGTACA2190250.032.8698231
TACATGG3624550.032.648032
CAACGCA2251400.031.6785325
ATCAACG2303800.030.9837063
AGTACAT2317550.030.3390882
ACATGGG3850550.030.243163
TCAACGC2425050.029.644934
AACGCAG2431350.029.5483676
CTAACGC164650.029.1869133
TAACGCC163850.028.896024
TATCAAC2505750.028.8841082
CTAGTAC373050.028.0997183
CATGGGG3062900.027.959344
GTACTAG299500.027.7731931
CTGTGCG389450.026.7368769
TCTAACG176000.026.7301542
ACGCAGA2834600.025.0027567