Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192401_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 95735344 |
Sequences flagged as poor quality | 0 |
Sequence length | 100 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 229451 | 0.23967219462855852 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 186525 | 0.19483399986529532 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 131012 | 0.13684810073905412 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 114880 | 0.0 | 49.70802 | 1 |
GTATCAA | 200350 | 0.0 | 39.72388 | 1 |
GTACATG | 361190 | 0.0 | 35.639053 | 1 |
GAGTACA | 222635 | 0.0 | 35.38708 | 1 |
TACATGG | 368405 | 0.0 | 34.466427 | 2 |
CAACGCA | 227740 | 0.0 | 33.98077 | 5 |
ATCAACG | 233710 | 0.0 | 33.128937 | 3 |
AGTACAT | 236195 | 0.0 | 32.636192 | 2 |
ACATGGG | 392130 | 0.0 | 31.8966 | 3 |
AACGCAG | 245795 | 0.0 | 31.675991 | 6 |
TCAACGC | 246550 | 0.0 | 31.635904 | 4 |
TATCAAC | 256095 | 0.0 | 30.752737 | 2 |
CTAGTAC | 39285 | 0.0 | 30.254898 | 3 |
CTAACGC | 17600 | 0.0 | 30.245388 | 3 |
CATGGGG | 312600 | 0.0 | 29.527967 | 4 |
TAACGCC | 17605 | 0.0 | 29.486662 | 4 |
GTACTAG | 30375 | 0.0 | 28.79327 | 1 |
CTGTGCG | 40430 | 0.0 | 28.553225 | 9 |
TCTAACG | 18665 | 0.0 | 27.791044 | 2 |
ACGCAGA | 285410 | 0.0 | 26.93569 | 7 |