FastQCFastQC Report
Tue 3 May 2016
SRR3192657_1_val_1.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192657_1_val_1.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93144645
Sequences flagged as poor quality0
Sequence length20-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCATTC416850.018.88296594-95
CGGGTGT309400.017.99671
TACCGCG177950.017.4273971
TGCGTCG314700.016.2982449
CCGAACG112350.016.1150823
GTCCGAA138250.016.022761
CGGTATA197300.015.7817434
CGGGGGA574400.015.1984831
GCGGGTT208650.015.1984521
CGGGGTT542050.015.1935831
CTATACC324150.015.113461594-95
CGAACGG102600.014.9246614
AACGGTA101800.014.7676276
GTGCGTC390350.014.5227578
TCGCATT444000.014.35563194-95
GCGGTGT446750.014.3025262
ACTATCG145450.013.90216158-59
TAGATCG105850.013.7628828
CGGGGGG718700.013.60691451
CGGGCTA88050.013.5057811