FastQCFastQC Report
Tue 3 May 2016
SRR3192399_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192399_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76795926
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG3147230.4098173124444128No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG2971570.386943703237591No Hit
CCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAGTT2010930.26185373427231023No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA1889810.2460820643011714No Hit
CCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAGTT1886440.24564323893952397No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA1756910.2287764587928792No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG1612720.21000072321544766No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG1561220.2032946383119334No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG1516530.1974753191985731No Hit
GGGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATT1370710.17848733277856432No Hit
GTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCCAGGAG1083700.1411142565036588No Hit
GTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCCAGGAG1017270.1324640580543296No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC922670.12014569627039852No Hit
AGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGT906530.11804402228316122No Hit
CAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAG831340.10825313832403037No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCT822900.10715412169129909No Hit
CGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCT797650.10386618685996442No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGATC248700.055.355332
GGGCGAT256500.053.7636681
CGGTGGC1365950.046.9818651
GCGATCT310600.044.519953
GCGGTGG729650.044.0376971
CGATCTG341450.041.0020644
GGTGGCG1681550.037.948822
GGCGCGT1743750.036.413375
TGGCGCG1767450.035.985434
GTGGCGC1804600.035.3218773
GCGCGTG1868200.034.0310756
CGCGTGC2017450.031.450347
GCGTGCC2126750.029.9356588
CGTGCCT2231400.028.6138449
CCTGTAG2519000.020.12236412-13
TGTAGTC2616750.019.27154414-15
TAGTCCC2637600.019.0590216-17
TGCCTGT2754150.018.4949310-11
GTGCCTG2627950.018.4451910-11
GCTGCGA445850.018.4081810-11