FastQCFastQC Report
Mon 2 May 2016
SRR3192657_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3192657_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93555584
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGAACG118350.018.739783
TACCGCG178050.018.0111161
CGGGTGT327000.017.8387951
GTCCGAA145950.017.2128431
CGAACGG109150.016.925514
AACGGTA107350.016.8996326
TGCGTCG319950.015.8082359
CGGTATA193500.015.0451134
TAGATCG123700.015.011468
GCGGTGT450850.014.9140682
CGGGGGA640000.014.8017841
CGGGGTT581150.014.67143251
ACGTACG78850.014.51553736-37
GCGGGTT214350.014.4504141
ACTATCG146450.014.34078358-59
GTGCGTC397650.013.86586958
CGTACGA81350.013.86512736-37
CGCATTC417200.013.37087194-95
CGGTGTG496100.013.3542933
TGAGCGT643950.012.685058