Basic Statistics
Measure | Value |
---|---|
Filename | SRR3192657_2_val_2.fq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 93144645 |
Sequences flagged as poor quality | 0 |
Sequence length | 20-101 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TAGGTCG | 9630 | 0.0 | 22.031113 | 7 |
TAACACG | 15660 | 0.0 | 19.82112 | 7 |
TAGTGCG | 18545 | 0.0 | 18.87097 | 78-79 |
GGCGCGT | 31670 | 0.0 | 18.654188 | 5 |
GTCTAAC | 16885 | 0.0 | 17.972113 | 4 |
AACACGT | 18135 | 0.0 | 16.836391 | 8 |
GTACTCG | 28695 | 0.0 | 16.423233 | 28-29 |
TACGCAC | 26870 | 0.0 | 15.453118 | 50-51 |
TATGCCG | 24335 | 0.0 | 14.611566 | 86-87 |
CGCGTGC | 41200 | 0.0 | 14.575338 | 7 |
AGCGCTC | 34510 | 0.0 | 14.5279045 | 9 |
TGGCGCG | 41225 | 0.0 | 13.849508 | 4 |
CGGTACA | 32330 | 0.0 | 13.433456 | 60-61 |
TGCGAAT | 32610 | 0.0 | 13.115509 | 74-75 |
CACTGCG | 39960 | 0.0 | 13.006898 | 5 |
CCAGTAG | 40195 | 0.0 | 12.988221 | 5 |
ACCCGAT | 36795 | 0.0 | 12.955108 | 76-77 |
CGATCGG | 21215 | 0.0 | 12.938989 | 92-93 |
CGCACGG | 32490 | 0.0 | 12.903276 | 52-53 |
TCGTAAG | 10605 | 0.0 | 12.873148 | 6 |